BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0389000 Os03g0389000|Os03g0389000
(400 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0389000 Peptidase C14, caspase catalytic domain contai... 651 0.0
Os03g0389400 Zinc finger, LSD1-type domain containing protein 445 e-125
Os03g0389100 Peptidase C14, caspase catalytic domain contai... 293 2e-79
Os03g0388900 Peptidase C14, caspase catalytic domain contai... 242 4e-64
Os10g0565100 Similar to Metacaspase 1 115 6e-26
Os01g0799900 Similar to Latex-abundant protein 100 2e-21
Os05g0496500 Similar to Latex-abundant protein 92 7e-19
Os05g0496400 Peptidase C14, caspase catalytic domain contai... 88 1e-17
Os11g0134700 Similar to Metacaspase 7 (Metacaspase 4) 84 3e-16
>Os03g0389000 Peptidase C14, caspase catalytic domain containing protein
Length = 400
Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/400 (82%), Positives = 328/400 (82%)
Query: 1 MGCNCLVGKGGNXXXXXXXXXXXXXXXCAHCXXXXXXXXXXXXXXXXXXXXXCALCHRMT 60
MGCNCLVGKGGN CAHC CALCHRMT
Sbjct: 1 MGCNCLVGKGGNTRPAATTSARPSSSRCAHCGAGLAVPRPGPGGAAAVTTVRCALCHRMT 60
Query: 61 CVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLRRDAPSGYPFVPGRKRALLVGVSYKG 120
CV FLRRDAPSGYPFVPGRKRALLVGVSYKG
Sbjct: 61 CVDRRGGRDLGGGGGGGALEASSSSWAPAEASFLRRDAPSGYPFVPGRKRALLVGVSYKG 120
Query: 121 SSYELEGTVNDVDCMRRLLGESFGFPADSILVLTEELGEGDPSRSPTRANLLAAMRWLVE 180
SSYELEGTVNDVDCMRRLLGESFGFPADSILVLTEELGEGDPSRSPTRANLLAAMRWLVE
Sbjct: 121 SSYELEGTVNDVDCMRRLLGESFGFPADSILVLTEELGEGDPSRSPTRANLLAAMRWLVE 180
Query: 181 GCDAGDSLVFHFSGHGVQKLDVNGDEVDGYNEALCPVDFERSGKILDDEINETIVRPLVA 240
GCDAGDSLVFHFSGHGVQKLDVNGDEVDGYNEALCPVDFERSGKILDDEINETIVRPLVA
Sbjct: 181 GCDAGDSLVFHFSGHGVQKLDVNGDEVDGYNEALCPVDFERSGKILDDEINETIVRPLVA 240
Query: 241 GAKLHAIVDTCHSGTILDLPFLCRLSRTGYWQWENHCRRPELAKGTSGGLAISISGCSDD 300
GAKLHAIVDTCHSGTILDLPFLCRLSRTGYWQWENHCRRPELAKGTSGGLAISISGCSDD
Sbjct: 241 GAKLHAIVDTCHSGTILDLPFLCRLSRTGYWQWENHCRRPELAKGTSGGLAISISGCSDD 300
Query: 301 QKSADSSGFSSEQXXXXXXIGAMTYSFIRAVESEPGTTYGRLLAAMRATIREGQQGSSVR 360
QKSADSSGFSSEQ IGAMTYSFIRAVESEPGTTYGRLLAAMRATIREGQQGSSVR
Sbjct: 301 QKSADSSGFSSEQAAAAAAIGAMTYSFIRAVESEPGTTYGRLLAAMRATIREGQQGSSVR 360
Query: 361 RLLPGRLGSFVRKMIPSGGVQEPQLCASEVFDIYRKPFLL 400
RLLPGRLGSFVRKMIPSGGVQEPQLCASEVFDIYRKPFLL
Sbjct: 361 RLLPGRLGSFVRKMIPSGGVQEPQLCASEVFDIYRKPFLL 400
>Os03g0389400 Zinc finger, LSD1-type domain containing protein
Length = 369
Score = 445 bits (1144), Expect = e-125, Method: Compositional matrix adjust.
Identities = 226/301 (75%), Positives = 245/301 (81%), Gaps = 11/301 (3%)
Query: 100 SGYPFVPGRKRALLVGVSYKGSSYELEGTVNDVDCMRRLLGESFGFPADSILVLTEELGE 159
S YP V G+KRALLVG+SY + YEL+GTVNDV+CM LL E F FPAD ILVLT+E
Sbjct: 80 SYYPRVSGKKRALLVGISYAATGYELKGTVNDVNCMSFLLRERFAFPADCILVLTQE--N 137
Query: 160 GDPSRSPTRANLLAAMRWLVEGCDAGDSLVFHFSGHGVQKLDVNGDEVDGYNEALCPVDF 219
GDP R PTRANLLAAMRWLVEGC AGDSLV HFSGHGVQKLDV+GDE DGY+EALCPVDF
Sbjct: 138 GDPYRVPTRANLLAAMRWLVEGCSAGDSLVLHFSGHGVQKLDVDGDEADGYDEALCPVDF 197
Query: 220 ERSGKILDDEINETIVRPLVAGAKLHAIVDTCHSGTILDLPFLCRLSRTGYWQWENHCRR 279
ER+G ILDDEINETIVRPLVAG KLHAIVDTCHSGTILDLPFLCRLSRTGYWQWENHCRR
Sbjct: 198 ERAGVILDDEINETIVRPLVAGVKLHAIVDTCHSGTILDLPFLCRLSRTGYWQWENHCRR 257
Query: 280 PELAKGTSGGLAISISGCSDDQKSADSSGFSSEQXXXXXXIGAMTYSFIRAVESEPGTTY 339
PELAKGTSGGLAISISGC D Q S+D++ FS GAMTYSFI+AVE+EPGTTY
Sbjct: 258 PELAKGTSGGLAISISGCGDSQTSSDTTAFSG-----GAATGAMTYSFIKAVETEPGTTY 312
Query: 340 GRLLAAMRATIREGQQGSSVRRLLPGRLGSFVRKMIPSGGVQEPQLCASEVFDIYRKPFL 399
GRLL+AMRATIR G + LG+F R++I QEPQLCASE FDIYRKPFL
Sbjct: 313 GRLLSAMRATIRGGGGEVGIPG----PLGAFFRRVITFSCAQEPQLCASEPFDIYRKPFL 368
Query: 400 L 400
L
Sbjct: 369 L 369
>Os03g0389100 Peptidase C14, caspase catalytic domain containing protein
Length = 302
Score = 293 bits (749), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 165/308 (53%), Positives = 202/308 (65%), Gaps = 21/308 (6%)
Query: 105 VPGRKRALLVGVSYKG-SSYELEGTVNDVDCMRRLLGESFGFPADSILVLTEELGEGDPS 163
V G KRALLVGVSYKG +S EL G DV M LL + F FP +SI +LTEELG DP
Sbjct: 4 VSGGKRALLVGVSYKGDTSRELTGAAEDVKNMNSLL-KKFLFPEESIHMLTEELGAKDPL 62
Query: 164 RSPTRANLLAAMRWLVEGCDAGDSLVFHFSGHGVQKLDVNGDEVDGYNEALCPVDFERSG 223
++PTR N++ MRWLVEGC AGDSLVFHFSGHG Q+ D NGDEVDG +E LCPVD++ SG
Sbjct: 63 KAPTRENIMKEMRWLVEGCRAGDSLVFHFSGHGRQRKDDNGDEVDGRDEELCPVDYKVSG 122
Query: 224 KILDDEINETIVRPLVAGAKLHAIVDTCHSGTILDLPFLCRLSRTGY---WQWENHCR-- 278
ILDD+IN+ IV+PL G KLHAI+DTCHSGT+LDLP+LCR +R G ++W R
Sbjct: 123 NILDDDINDAIVKPLTQGVKLHAIIDTCHSGTMLDLPYLCRFNRMGLCSRYKWVGQTRWR 182
Query: 279 ---RPELAKGTSGGLAISISGCSDDQKSADSSGFSSEQXXXXXXIGAMTYSFIRAVESEP 335
+ E A GG AISISGC D Q S + + G MT+SF+ AV S
Sbjct: 183 LSPKKEWAMVPVGGHAISISGCKDYQNSLEPDNTAGG--------GVMTWSFLEAVGSRR 234
Query: 336 GTTYGRLLAAMRATIREG-QQGSSVRRLLPGRLGSFVRKMIPSG--GVQEPQLCASEVFD 392
TYG LL +MRA + QQ SS + L+ G LGS K +P VQEPQLC+S+ F+
Sbjct: 235 TMTYGELLDSMRAKVHHRLQQSSSGKCLVTGCLGSLAAKCLPCCFLSVQEPQLCSSKEFN 294
Query: 393 IYRKPFLL 400
+Y + F+L
Sbjct: 295 VYEEQFIL 302
>Os03g0388900 Peptidase C14, caspase catalytic domain containing protein
Length = 218
Score = 242 bits (617), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 132/229 (57%), Positives = 157/229 (68%), Gaps = 14/229 (6%)
Query: 174 AMRWLVEGCDAGDSLVFHFSGHGVQKLDVNGDEVDGYNEALCPVDFERSGKILDDEINET 233
AM WLV+GC +GDSLVFHFSG GVQ D +GDEVDGY+EA+CP+D G ILDDEINE
Sbjct: 2 AMNWLVQGCSSGDSLVFHFSGIGVQVPDDDGDEVDGYDEAICPMDSFSQGPILDDEINEA 61
Query: 234 IVRPLVAGAKLHAIVDTCHSGTILDLPFLCRL-SRTGYWQWENHCRRPELA-KGTSGGLA 291
IVRPLV GAKLHA+VD HS T+LDLPFLC L SR+G WQWE+H R P A KG+SGG A
Sbjct: 62 IVRPLVHGAKLHAVVDAEHSSTVLDLPFLCCLSSRSGGWQWEDH-RPPTGAYKGSSGGQA 120
Query: 292 ISISGCSDDQKSADSSGFSSEQXXXXXXIGAMTYSFIRAVESEPGTTYGRLLAAMRATIR 351
+ SGCSD +GAMT+SFI+AVE EP TYG LL MR+ +R
Sbjct: 121 MLFSGCSDGNN-------KHSLLPEASTVGAMTHSFIKAVECEPRATYGSLLTTMRSIMR 173
Query: 352 EGQQGSSVRRLLPGRLGSFVRKMIPSGGVQEPQLCASEVFDIYRKPFLL 400
+G V L G +G+ +RK+ G+QEP L SE+FDIYRKPF+L
Sbjct: 174 DG----GVTCNLQGPIGAPIRKVANFSGIQEPNLSCSEMFDIYRKPFVL 218
>Os10g0565100 Similar to Metacaspase 1
Length = 161
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 66/139 (47%), Positives = 85/139 (61%), Gaps = 13/139 (9%)
Query: 249 DTCHSGTILDLPFLCRLSRTGYWQWENHCRRPELAKGTSGGLAISISGCSDDQKSADSSG 308
D CHSGT LDLPFLCR++R+G + WE+H R + KGTSGG IS SGC DDQ SAD+S
Sbjct: 1 DACHSGTALDLPFLCRMNRSGQYVWEDHRPRSGVWKGTSGGECISFSGCDDDQTSADTSA 60
Query: 309 FSSEQXXXXXXIGAMTYSFIRAVESEPGTTYGRLLAAMRATIRE-----GQQGSSVRRLL 363
S GAMT+ FI+A+E GTTYG +L +MR+TIR G G +V L+
Sbjct: 61 LS-----KITSTGAMTFCFIQAIERGQGTTYGSILTSMRSTIRSTGDSMGSGGGAVTSLI 115
Query: 364 PGRLGSFVRKMIPSGGVQE 382
L + SGG+++
Sbjct: 116 TMLL---TGGSVSSGGLKQ 131
>Os01g0799900 Similar to Latex-abundant protein
Length = 417
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/153 (40%), Positives = 83/153 (54%), Gaps = 8/153 (5%)
Query: 107 GRKRALLVGVSYKGSSYELEGTVNDVDCMRRLLGESFGFPADSILVLTEELGEGDPSRSP 166
GRKRALLVG++Y G+ EL+G NDVD M R L + FGF D I VL + G P
Sbjct: 2 GRKRALLVGINYPGTKAELKGCHNDVDRMHRCLVDRFGFDEDDIRVLLDRDSSG---TQP 58
Query: 167 TRANLLAAMRWLVEGCDAGDSLVFHFSGHGVQKLDVNGDEVD-GYNEALCPVDFERSGKI 225
T AN+ A+ LV GD L FH+SGHG + G D GY+E + P D +
Sbjct: 59 TGANIRRALAQLVGDARPGDFLFFHYSGHGTRLPAETGQNDDTGYDECIVPSDM----NL 114
Query: 226 LDDEINETIVRPLVAGAKLHAIVDTCHSGTILD 258
+ D+ +V+ + G + D+CHSG +LD
Sbjct: 115 ITDQDFRELVQKVPNGCLFTIVSDSCHSGGLLD 147
>Os05g0496500 Similar to Latex-abundant protein
Length = 420
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 107 GRKRALLVGVSYKGSSYELEGTVNDVDCMRRLLGESFGFPADSILVLTEELGEGDPSRS- 165
GRKRALLVG++Y G+ EL+G NDV MRR L + FGF I VL D RS
Sbjct: 3 GRKRALLVGINYPGTKAELKGCHNDVARMRRALVDRFGFDEADIRVL------ADADRSA 56
Query: 166 --PTRANLLAAMRWLVEGCDAGDSLVFHFSGHGVQ-KLDVNGDEVDGYNEALCPVDFERS 222
PT AN+ + LV GD L FH+SGHG + + D+ GY+E + P D
Sbjct: 57 PQPTGANIRRELARLVGDARPGDFLFFHYSGHGTRLPAETGQDDDTGYDECIVPSDM--- 113
Query: 223 GKILDDEINETIVRPLVAGAKLHAIVDTCHSGTILDLPFLCRLSRTGYWQWENHCRRPEL 282
++ D+ +V+ + + D+CHSG +LD ++ + +R E
Sbjct: 114 -NLITDQDFTELVQKVPDDCLFTIVSDSCHSGGLLD-KTKEQIGHSTKQNQAQQIKREER 171
Query: 283 AKGTSGGL 290
+ +GG
Sbjct: 172 SDSGTGGF 179
>Os05g0496400 Peptidase C14, caspase catalytic domain containing protein
Length = 409
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 88/156 (56%), Gaps = 13/156 (8%)
Query: 107 GRKRALLVGVSYKGSSYELEGTVNDVDCMRRLLGESFGFPADSILVLTEELGEGDPSR-S 165
GRKRA+LVG++Y G+ EL+G +NDV MRR L + FGF I V L + DPS
Sbjct: 2 GRKRAVLVGINYAGTEGELKGCLNDVARMRRCLVDRFGFDEADIRV----LADADPSTPQ 57
Query: 166 PTRANLLAAMRWLVEGCDAGDSLVFHFSGHGVQKLDVN---GDEVDGYNEALCPVDFERS 222
PT AN+ + LV GD+L FH+SGHG+Q L + D+ GY+E + P D
Sbjct: 58 PTGANIRLELERLVGDARPGDTLFFHYSGHGLQ-LPIETGGDDDDTGYDECIVPCDM--- 113
Query: 223 GKILDDEINETIVRPLVAGAKLHAIVDTCHSGTILD 258
++ D+ +V+ + G + D+CHSG ++D
Sbjct: 114 -NLIKDQDFTELVQKVPDGCLFTMVSDSCHSGGLID 148
>Os11g0134700 Similar to Metacaspase 7 (Metacaspase 4)
Length = 341
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 80/155 (51%), Gaps = 11/155 (7%)
Query: 108 RKRALLVGVSYKGSSYELEGTVNDVDCMRRLLGESFGFPADSILVLTEELGEGDPSRSPT 167
+K A LVG +Y G+ EL+G +NDV MR L FGF + VLT++ G PT
Sbjct: 7 KKLATLVGCNYAGTPNELQGCINDVAAMRDALVARFGFAPADVTVLTDDRGS---PVLPT 63
Query: 168 RANLLAAMRWLVEGCDAGDSLVFHFSGHGVQKLDVNGDEVDGY---NEALCPVDFERSGK 224
AN+ A+ +V GD L FH+SGHG V G G+ +EA+ P DF
Sbjct: 64 GANIKRALADMVARAAPGDVLFFHYSGHGTLVPPVKGRR-HGHGECDEAIVPCDF----N 118
Query: 225 ILDDEINETIVRPLVAGAKLHAIVDTCHSGTILDL 259
++ D +V + GA + D+CHSG ++DL
Sbjct: 119 LITDVDFRRLVDRVPRGASFTMVSDSCHSGGLIDL 153
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.139 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,189,851
Number of extensions: 486617
Number of successful extensions: 1004
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 983
Number of HSP's successfully gapped: 9
Length of query: 400
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 297
Effective length of database: 11,657,759
Effective search space: 3462354423
Effective search space used: 3462354423
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)