Os05g0496500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Latex-abundant protein.
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Os05g0496500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Latex-abundant protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.82 | 0.378 | 6.25 | 1.37 | 0.558 | 0.714 | 0.236 | -1.58 | 0.611 | 5.16 | 24.3 | 5309 | -- | -- |
| 67.47 | 0.383 | 6.29 | 1.14 | 0.58 | 0.76 | 0.448 | -- | 0.585 | 5.15 | 22.1 | 9463 | -- | -- |
| 64.96 | 0.375 | 6.25 | 1.38 | 0.559 | 0.714 | -- | -1.6 | 0.612 | 5.18 | 24.3 | 5332 | -- | -- |
| 67.18 | 0.382 | 6.29 | 1.16 | 0.568 | 0.796 | -- | -- | 0.585 | 5.15 | 21.5 | 9639 | -- | -- |
| 80.56 | 0.418 | 6.26 | 1.4 | -- | 0.666 | -- | -1.52 | 0.641 | -- | 24.57 | 6204 | -- | -- |
| 79.98 | 0.419 | 6.36 | 0.579 | 0.541 | -- | 0.215 | -- | 0.278 | 5.48 | -- | -- | -- | -- |
| 80.09 | 0.419 | 6.36 | 0.58 | 0.542 | -- | -- | -- | 0.277 | 5.5 | -- | -- | -- | -- |
| 82.94 | 0.424 | 6.29 | 1.2 | -- | 0.807 | -- | -- | 0.606 | -- | 21.5 | 9270 | -- | -- |
| 82.48 | 0.425 | 6.37 | -- | 0.423 | 0.346 | -- | -- | 0.23 | 6.65 | 28.77 | 7367 | -- | -- |
| 95.39 | 0.456 | 6.37 | 0.598 | -- | -- | -- | -- | 0.29 | -- | -- | -- | -- | -- |
| 88.95 | 0.441 | 6.38 | -- | 0.552 | -- | -- | -- | 0.212 | 5.46 | -- | -- | -- | -- |
| 91.29 | 0.446 | 6.38 | -- | -- | 0.43 | -- | -- | 0.241 | -- | 28.77 | 7367 | -- | -- |
| 104.81 | 0.478 | 6.38 | -- | -- | -- | -- | -- | 0.224 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.50 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 22 |
| 5 | 61.42 | temperature | 15 | 270 | > th | dose dependent | rect. | 8 | 19 |
| 6 | 61.44 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 7 | 61.44 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 10 | 61.50 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 12 | 61.51 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 10 |
| 19 | 61.70 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 7 |
| 22 | 61.74 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 5 |
| 28 | 61.77 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 30 | 61.78 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 8 |
| 54 | 62.13 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 55 | 62.13 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 56 | 62.13 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 57 | 62.13 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 60 | 62.15 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 76 | 62.28 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 94 | 62.45 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 100 | 62.58 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 18 |
| 123 | 62.77 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 12 |
| 154 | 62.91 | wind | 5 | 43200 | > th | dose dependent | sin | 14 | NA |
| 159 | 62.91 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 17 |
| 168 | 62.94 | wind | 5 | 43200 | > th | dose independent | rect. | 16 | 10 |
| 181 | 63.00 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 17 |
| 188 | 63.03 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 17 |
| 189 | 63.03 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 19 |
| 193 | 63.04 | wind | 5 | 43200 | > th | dose independent | sin | 14 | NA |
| 194 | 63.04 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 19 |
| 198 | 63.06 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 12 |
| 227 | 63.13 | wind | 5 | 43200 | < th | dose independent | rect. | 16 | 10 |
| 234 | 63.14 | wind | 5 | 43200 | < th | dose independent | sin | 14 | NA |
| 244 | 63.16 | wind | 9 | 43200 | > th | dose dependent | sin | 14 | NA |
| 264 | 63.20 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 269 | 63.22 | wind | 9 | 43200 | > th | dose independent | sin | 13 | NA |
| 295 | 63.26 | temperature | 15 | 10 | > th | dose dependent | rect. | 10 | 19 |
| 401 | 63.47 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 20 |
| 404 | 63.47 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 444 | 63.52 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 20 |
| 516 | 63.58 | radiation | 1 | 1440 | < th | dose dependent | sin | 15 | NA |
| 534 | 63.60 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 22 |
| 540 | 63.60 | wind | 5 | 43200 | > th | dose dependent | rect. | 6 | 19 |
| 541 | 63.60 | wind | 5 | 43200 | > th | dose dependent | rect. | 6 | 21 |
| 583 | 63.64 | wind | 5 | 43200 | > th | dose independent | no | NA | NA |
| 589 | 63.64 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 23 |
| 604 | 63.65 | wind | 5 | 43200 | > th | dose independent | rect. | 23 | 23 |
| 621 | 63.67 | wind | 5 | 43200 | < th | dose independent | no | NA | NA |
| 665 | 63.69 | wind | 5 | 43200 | < th | dose independent | rect. | 23 | 23 |
| 705 | 63.72 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 711 | 63.73 | wind | 5 | 43200 | > th | dose dependent | no | NA | NA |
| 722 | 63.73 | wind | 5 | 43200 | > th | dose dependent | rect. | 23 | 23 |
| 734 | 63.74 | wind | 5 | 43200 | < th | dose independent | rect. | 19 | 23 |
| 744 | 63.75 | wind | 5 | 43200 | > th | dose independent | rect. | 19 | 23 |
| 869 | 63.84 | wind | 5 | 43200 | > th | dose dependent | rect. | 20 | 23 |
| 892 | 63.86 | wind | 5 | 43200 | > th | dose dependent | rect. | 17 | 23 |