Os03g0389400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, LSD1-type domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os03g0389400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Zinc finger, LSD1-type domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.28 | 0.356 | 8.5 | -0.142 | 0.903 | -1.07 | -0.0642 | 0.754 | 0.228 | 9.83 | 18.62 | 2572 | -- | -- |
| 57.79 | 0.354 | 8.52 | -0.35 | 0.909 | -1.08 | -0.0846 | -- | 0.177 | 9.82 | 17.7 | 2575 | -- | -- |
| 57.3 | 0.353 | 8.5 | -0.139 | 0.903 | -1.07 | -- | 0.771 | 0.229 | 9.83 | 18.64 | 2571 | -- | -- |
| 57.82 | 0.354 | 8.53 | -0.35 | 0.91 | -1.08 | -- | -- | 0.169 | 9.81 | 17.8 | 2598 | -- | -- |
| 99.36 | 0.464 | 8.49 | 0.241 | -- | -1.37 | -- | 2.56 | 0.193 | -- | 24.76 | 2248 | -- | -- |
| 86.25 | 0.435 | 8.58 | -0.79 | 0.997 | -- | -0.0493 | -- | -0.0702 | 10.2 | -- | -- | -- | -- |
| 86.26 | 0.435 | 8.58 | -0.792 | 0.997 | -- | -- | -- | -0.0704 | 10.2 | -- | -- | -- | -- |
| 100.71 | 0.467 | 8.54 | -0.283 | -- | -1.36 | -- | -- | 0.228 | -- | 18.42 | 2267 | -- | -- |
| 60.63 | 0.363 | 8.52 | -- | 0.93 | -1.16 | -- | -- | 0.203 | 9.8 | 17.94 | 2687 | -- | -- |
| 146.58 | 0.566 | 8.6 | -0.807 | -- | -- | -- | -- | -0.0725 | -- | -- | -- | -- | -- |
| 102.8 | 0.474 | 8.56 | -- | 1 | -- | -- | -- | 0.0179 | 10.3 | -- | -- | -- | -- |
| 89.28 | 0.44 | 8.52 | -- | -- | -1.76 | -- | -- | 0.285 | -- | 17.8 | 844 | -- | -- |
| 163.74 | 0.597 | 8.58 | -- | -- | -- | -- | -- | 0.017 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.55 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 3 |
| 36 | 56.58 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 39 | 56.60 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 2 |
| 43 | 56.70 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 4 |
| 83 | 57.23 | temperature | 20 | 1440 | > th | dose dependent | sin | 5 | NA |
| 86 | 57.25 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 17 |
| 217 | 58.09 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 255 | 58.21 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 20 |
| 321 | 58.37 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 322 | 58.38 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 324 | 58.38 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 325 | 58.38 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 356 | 58.44 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 8 |
| 357 | 58.44 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 450 | 58.66 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 9 |
| 454 | 58.67 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 468 | 58.70 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 4 |
| 496 | 58.77 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 531 | 58.85 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 8 |
| 532 | 58.85 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 10 |
| 539 | 58.87 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 596 | 58.96 | radiation | 1 | 4320 | < th | dose dependent | rect. | 18 | 15 |
| 609 | 58.98 | radiation | 1 | 4320 | < th | dose dependent | rect. | 18 | 12 |
| 616 | 58.99 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 668 | 59.05 | radiation | 1 | 4320 | < th | dose dependent | rect. | 18 | 17 |
| 679 | 59.06 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 752 | 59.14 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 777 | 59.16 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 8 |
| 849 | 59.23 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 17 |
| 857 | 59.24 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 925 | 59.30 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 15 | 2 |
| 949 | 59.32 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 2 |