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Os05g0496400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase C14, caspase catalytic domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.91 (0.0386) R2 : 0.579
β1 : 2.79 (0.142) R2dD : 0.381 R2D : 0.339
β2 : 1.78 (0.113) R2dC : 0.294 R2C : 0.141
β3 : -1.41 (0.155) R2dE : 0.1 R2E : -0.105
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.152 (0.0832) R2dN8 : 0.00459 R2N8 : -0.0051
σ : 0.722
deviance : 240.2
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C
peak time of C : 4.31
E
wheather : humidity
threshold : 81.76
memory length : 674
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 19.6
open length of G : 3.71

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
219.57 0.696 5.93 2.99 1.9 -1.51 3.8 -1.78 0.167 4.42 81.71 655 19.3 5.09
223.08 0.696 5.91 2.87 1.74 -1.47 2.54 -- 0.125 4.52 82.81 686 19.2 4.22
240.07 0.722 5.93 2.85 1.83 -1.57 -- 0.672 0.113 4.29 81.52 679 19 4.43
240.2 0.722 5.91 2.79 1.78 -1.41 -- -- 0.152 4.31 81.76 674 19.6 3.71
344.41 0.864 5.97 2.84 -- -0.81 -- -0.832 0.0964 -- 88 44645 19.4 4.3
264.68 0.763 5.9 2.73 1.29 -- 2.39 -- 0.263 5.08 -- -- -- --
279.12 0.782 5.9 2.72 1.3 -- -- -- 0.251 4.97 -- -- -- --
342.34 0.862 5.98 2.64 -- -1.11 -- -- -0.00592 -- 86.36 47520 23 2.74
443.4 0.981 6 -- 1.84 -1.24 -- -- -0.149 4.3 81.99 593 21.4 1.51
368.11 0.897 5.92 2.77 -- -- -- -- 0.285 -- -- -- -- --
474.49 1.02 5.97 -- 1.35 -- -- -- -0.0519 4.91 -- -- -- --
357.74 0.881 6.11 -- -- -2.52 -- -- -0.529 -- 94.75 47520 2.2 0.0167
570.52 1.11 5.99 -- -- -- -- -- -0.0227 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 221.46 humidity 80.0 720 > th dose dependent rect. 19 5
7 223.43 humidity 80.0 720 > th dose dependent rect. 16 8
16 224.91 humidity 90.0 720 > th dose independent rect. 18 6
41 226.14 humidity 90.0 720 < th dose independent rect. 17 8
57 226.96 humidity 90.0 720 > th dose independent rect. 10 14
89 227.99 humidity 90.0 720 < th dose dependent rect. 18 7
136 229.50 humidity 80.0 720 > th dose dependent sin 16 NA
154 229.85 humidity 90.0 720 < th dose independent rect. 9 16
170 230.19 temperature 25.0 720 > th dose dependent rect. 18 11
239 231.43 temperature 25.0 720 > th dose dependent rect. 20 4
271 232.13 humidity 90.0 720 < th dose independent sin 17 NA
277 232.23 humidity 80.0 720 < th dose independent rect. 18 1
280 232.26 temperature 25.0 720 > th dose dependent rect. 20 1
367 233.31 humidity 70.0 720 > th dose dependent rect. 15 16
382 233.51 humidity 90.0 720 > th dose independent sin 18 NA
460 234.42 humidity 80.0 720 > th dose dependent rect. 5 19
480 234.69 humidity 90.0 720 > th dose independent rect. 5 19
580 235.70 humidity 90.0 90 > th dose independent rect. 5 22
697 236.74 humidity 90.0 720 < th dose dependent sin 13 NA
777 237.49 radiation 1.0 720 > th dose independent rect. 9 10
812 237.66 humidity 80.0 90 > th dose dependent rect. 5 22
866 238.04 precipitation 0.1 720 < th dose independent rect. 7 22
870 238.04 precipitation 0.1 720 < th dose dependent rect. 7 22
941 238.65 radiation 1.0 4320 > th dose independent rect. 12 5
993 238.90 radiation 1.0 4320 < th dose independent rect. 12 5