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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0134700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Metacaspase 7 (Metacaspase 4).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.63 (0.0576) R2 : 0.606
β1 : -3.43 (0.211) R2dD : 0.238 R2D : 0.13
β2 : 2.44 (0.148) R2dC : 0.238 R2C : 0.2
β3 : -2.56 (0.255) R2dE : 0.123 R2E : -0.0982
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -12.4 (1.14) R2dD*E : 0.144 R2D*E : 0.0188
γ1 : -1.38 (0.125) R2dN8 : 0.15 R2N8 : 0.0243
σ : 1.07
deviance : 526.84
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_____
C
peak time of C : 7.19
E
wheather : wind
threshold : 6.706
memory length : 4729
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 20.1
open length of G : 5.63

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
528.33 1.08 6.63 -3.41 2.44 -2.5 0.0142 -12.2 -1.39 7.21 6.695 4640 20 5.97
590.42 1.13 6.53 -3.37 2.22 -1.97 0.0849 -- -1.59 7.47 10.19 9461 19.9 5.03
526.84 1.07 6.63 -3.43 2.44 -2.56 -- -12.4 -1.38 7.19 6.706 4729 20.1 5.63
570.63 1.11 6.69 -3.28 2.49 -2.01 -- -- -1.53 7.19 10.26 9459 20 5.93
842.06 1.35 6.67 -3.35 -- -2.51 -- -12.9 -1.33 -- 6.802 4868 20.1 5.31
703.69 1.24 6.63 -3.19 2.44 -- -0.0521 -- -1.25 7.21 -- -- -- --
703.7 1.24 6.63 -3.19 2.44 -- -- -- -1.25 7.21 -- -- -- --
882.9 1.38 6.76 -3.41 -- -1.98 -- -- -1.52 -- 10.2 10148 20 6.08
845.92 1.35 6.69 -- 2.34 -2.92 -- -- -1.18 7.39 10.2 7771 20.2 7.7
1017.76 1.49 6.69 -3.14 -- -- -- -- -1.21 -- -- -- -- --
971.47 1.46 6.55 -- 2.4 -- -- -- -0.895 7.29 -- -- -- --
1101.46 1.55 6.66 -- -- -4.11 -- -- -1.06 -- 10.2 4536 19.9 8.59
1278.36 1.67 6.61 -- -- -- -- -- -0.859 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 541.51 wind 7.0 4320 < th dose independent rect. 20 5
3 541.61 wind 7.0 4320 > th dose independent rect. 20 5
5 542.07 wind 7.0 4320 > th dose dependent rect. 20 6
10 544.63 wind 7.0 4320 > th dose dependent rect. 20 2
11 544.65 wind 7.0 4320 < th dose independent rect. 20 2
12 544.82 wind 7.0 4320 > th dose independent rect. 20 2
30 548.16 atmosphere 995.0 14400 > th dose independent rect. 17 1
32 548.64 atmosphere 995.0 14400 > th dose independent rect. 8 5
34 548.88 atmosphere 995.0 14400 < th dose independent rect. 17 1
35 548.88 atmosphere 995.0 14400 < th dose dependent rect. 17 1
67 549.80 atmosphere 1005.0 14400 > th dose independent rect. 23 1
135 553.83 atmosphere 995.0 14400 > th dose independent rect. 6 13
136 553.93 atmosphere 995.0 14400 > th dose independent rect. 13 6
200 555.43 atmosphere 1005.0 14400 < th dose independent rect. 23 2
227 556.76 atmosphere 1005.0 14400 < th dose independent rect. 23 8
290 557.86 atmosphere 1005.0 14400 > th dose independent rect. 23 8
304 558.16 atmosphere 995.0 14400 < th dose dependent rect. 14 1
317 558.45 precipitation 0.1 14400 > th dose dependent rect. 20 2
320 558.54 atmosphere 1005.0 14400 > th dose independent rect. 4 1
334 558.95 atmosphere 1005.0 14400 > th dose independent rect. 3 3
346 559.36 atmosphere 1005.0 4320 > th dose independent rect. 20 1
352 559.51 atmosphere 1005.0 14400 < th dose independent rect. 3 3
410 560.66 atmosphere 995.0 14400 < th dose independent sin 22 NA
447 561.06 atmosphere 995.0 14400 > th dose independent sin 22 NA
526 562.28 atmosphere 995.0 14400 < th dose dependent sin 22 NA
538 562.70 radiation 1.0 14400 < th dose dependent rect. 19 7
563 563.28 atmosphere 1005.0 4320 < th dose independent rect. 6 5
581 563.59 atmosphere 1005.0 4320 > th dose independent rect. 6 5
595 563.67 atmosphere 995.0 14400 > th dose independent rect. 19 21
608 563.86 atmosphere 1005.0 4320 < th dose independent rect. 7 2
741 565.50 atmosphere 1005.0 4320 < th dose independent rect. 6 8
906 566.92 radiation 1.0 14400 < th dose dependent rect. 23 1
994 567.41 atmosphere 995.0 14400 > th dose independent rect. 14 23
998 567.43 atmosphere 995.0 14400 > th dose independent no NA NA