Os03g0388900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase C14, caspase catalytic domain containing protein.
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Os03g0388900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase C14, caspase catalytic domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 123.17 | 0.521 | 11.8 | -0.673 | 0.956 | -1.37 | 0.33 | 2.02 | -0.0782 | 16.9 | 26.58 | 1242 | -- | -- |
| 124.97 | 0.521 | 11.8 | -1.06 | 0.916 | -1.1 | 0.304 | -- | -0.0862 | 16.8 | 26.4 | 1241 | -- | -- |
| 123.44 | 0.517 | 11.8 | -0.675 | 0.96 | -1.38 | -- | 2.01 | -0.078 | 17 | 26.6 | 1240 | -- | -- |
| 124.19 | 0.519 | 11.8 | -1.15 | 0.973 | -1.18 | -- | -- | -0.171 | 17 | 26.6 | 1204 | -- | -- |
| 170.74 | 0.609 | 11.8 | -0.637 | -- | -1.5 | -- | 2 | -0.041 | -- | 26.14 | 1265 | -- | -- |
| 178.15 | 0.626 | 11.8 | -1.51 | 1.07 | -- | 0.659 | -- | -0.206 | 16.3 | -- | -- | -- | -- |
| 179.33 | 0.627 | 11.8 | -1.5 | 1.08 | -- | -- | -- | -0.203 | 16.4 | -- | -- | -- | -- |
| 171.2 | 0.609 | 11.8 | -1.13 | -- | -1.3 | -- | -- | -0.162 | -- | 26.18 | 1253 | -- | -- |
| 156.4 | 0.582 | 11.8 | -- | 0.941 | -1.39 | -- | -- | 0.000542 | 17 | 26.02 | 1240 | -- | -- |
| 242.05 | 0.727 | 11.8 | -1.55 | -- | -- | -- | -- | -0.231 | -- | -- | -- | -- | -- |
| 238.92 | 0.723 | 11.8 | -- | 1.11 | -- | -- | -- | -0.0353 | 16.3 | -- | -- | -- | -- |
| 202.01 | 0.662 | 11.8 | -- | -- | -1.56 | -- | -- | 0.038 | -- | 25.4 | 1263 | -- | -- |
| 305.13 | 0.815 | 11.8 | -- | -- | -- | -- | -- | -0.0598 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 101.85 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 2 | 103.95 | humidity | 80 | 43200 | > th | dose independent | rect. | 23 | 2 |
| 5 | 105.32 | wind | 3 | 43200 | > th | dose dependent | rect. | 3 | 14 |
| 8 | 105.68 | wind | 3 | 43200 | > th | dose dependent | rect. | 5 | 11 |
| 9 | 105.86 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 17 | 106.41 | humidity | 80 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 24 | 106.97 | wind | 1 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 27 | 107.24 | wind | 3 | 43200 | > th | dose dependent | sin | 1 | NA |
| 37 | 107.84 | humidity | 80 | 43200 | < th | dose independent | rect. | 22 | 3 |
| 39 | 107.87 | humidity | 80 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 44 | 107.98 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 21 |
| 54 | 108.26 | wind | 9 | 43200 | < th | dose dependent | rect. | 3 | 13 |
| 67 | 108.67 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 12 |
| 68 | 108.71 | wind | 3 | 43200 | > th | dose dependent | rect. | 2 | 20 |
| 70 | 108.76 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 16 |
| 75 | 108.82 | wind | 9 | 43200 | < th | dose dependent | rect. | 5 | 10 |
| 80 | 108.89 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 21 |
| 115 | 109.41 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 12 |
| 147 | 109.71 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 22 |
| 148 | 109.71 | wind | 3 | 43200 | > th | dose dependent | rect. | 18 | 23 |
| 169 | 109.82 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 6 |
| 201 | 110.05 | wind | 7 | 43200 | > th | dose dependent | rect. | 24 | 21 |
| 212 | 110.12 | wind | 1 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 227 | 110.23 | wind | 7 | 43200 | > th | dose dependent | rect. | 18 | 22 |
| 240 | 110.33 | wind | 3 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 246 | 110.35 | wind | 5 | 43200 | < th | dose independent | rect. | 3 | 18 |
| 259 | 110.45 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 13 | 3 |
| 263 | 110.50 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 10 | 5 |
| 272 | 110.54 | wind | 3 | 43200 | > th | dose dependent | no | NA | NA |
| 276 | 110.58 | wind | 3 | 43200 | > th | dose dependent | rect. | 13 | 23 |
| 281 | 110.61 | wind | 5 | 43200 | > th | dose independent | rect. | 3 | 18 |
| 310 | 110.70 | wind | 9 | 43200 | < th | dose dependent | sin | 2 | NA |
| 312 | 110.70 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 23 |
| 314 | 110.72 | wind | 3 | 43200 | > th | dose dependent | rect. | 9 | 23 |
| 317 | 110.74 | wind | 5 | 43200 | < th | dose independent | sin | 0 | NA |
| 351 | 110.89 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 12 | 5 |
| 356 | 110.92 | wind | 5 | 43200 | > th | dose independent | sin | 0 | NA |
| 378 | 111.02 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 7 | 8 |
| 441 | 111.28 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 443 | 111.29 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 6 |
| 471 | 111.44 | radiation | 40 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 475 | 111.45 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 638 | 112.09 | humidity | 80 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 649 | 112.13 | humidity | 80 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 770 | 112.50 | wind | 7 | 43200 | > th | dose dependent | rect. | 12 | 23 |
| 795 | 112.62 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 23 |
| 854 | 112.80 | humidity | 80 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 877 | 112.89 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 8 |
| 916 | 112.98 | wind | 7 | 43200 | > th | dose dependent | no | NA | NA |
| 930 | 113.04 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 20 |
| 980 | 113.16 | wind | 9 | 43200 | > th | dose dependent | rect. | 13 | 19 |