BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0353900 Os03g0353900|AK073188
(836 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0353900 Argonaute and Dicer protein, PAZ domain contai... 1753 0.0
Os02g0831600 AGO1 homologous protein 188 2e-47
Os06g0729300 Similar to AGO1 homologous protein 182 6e-46
Os06g0597400 Similar to ZLL/PNH homologous protein 179 6e-45
Os02g0672200 Similar to AGO1 homologous protein 168 2e-41
Os07g0188000 Similar to Argonaute 4 protein 164 4e-40
Os03g0682600 Similar to Argonaute 4 protein 122 2e-27
Os02g0169400 Similar to Argonaute 4 protein 103 5e-22
Os02g0616501 Argonaute and Dicer protein, PAZ domain contai... 102 8e-22
Os03g0682200 Similar to Argonaute-like protein (Fragment) 100 4e-21
>Os03g0353900 Argonaute and Dicer protein, PAZ domain containing protein
Length = 836
Score = 1753 bits (4541), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 836/836 (100%), Positives = 836/836 (100%)
Query: 1 MHEVHRVVLKILQFVINTKTTSSQTSRILPDELIKLHGFTTLGGKRPAYDGRESLYTNGS 60
MHEVHRVVLKILQFVINTKTTSSQTSRILPDELIKLHGFTTLGGKRPAYDGRESLYTNGS
Sbjct: 1 MHEVHRVVLKILQFVINTKTTSSQTSRILPDELIKLHGFTTLGGKRPAYDGRESLYTNGS 60
Query: 61 LPFESKESVVKVFDPEKNAKERAQKEFKITIEIVGKTNLYHLQRFLLGKHRGIAQEIIHV 120
LPFESKESVVKVFDPEKNAKERAQKEFKITIEIVGKTNLYHLQRFLLGKHRGIAQEIIHV
Sbjct: 61 LPFESKESVVKVFDPEKNAKERAQKEFKITIEIVGKTNLYHLQRFLLGKHRGIAQEIIHV 120
Query: 121 FDVILSDKLSRNHVTGPRSFLCTQIGHQGYIGDGLDSWRGYHQSLRLRKIGISLNTDMSA 180
FDVILSDKLSRNHVTGPRSFLCTQIGHQGYIGDGLDSWRGYHQSLRLRKIGISLNTDMSA
Sbjct: 121 FDVILSDKLSRNHVTGPRSFLCTQIGHQGYIGDGLDSWRGYHQSLRLRKIGISLNTDMSA 180
Query: 181 ASFMPVRIIQIIDGFLNISYTSRPLLERNRVQLKKVLCHVCIETNHHDDQIGRYKITGIT 240
ASFMPVRIIQIIDGFLNISYTSRPLLERNRVQLKKVLCHVCIETNHHDDQIGRYKITGIT
Sbjct: 181 ASFMPVRIIQIIDGFLNISYTSRPLLERNRVQLKKVLCHVCIETNHHDDQIGRYKITGIT 240
Query: 241 PIPMSNNICPVGEEGTTMTVLQYFCDMEKTGVPSVGHWNIAEEKIINGGALDNWTSLNLS 300
PIPMSNNICPVGEEGTTMTVLQYFCDMEKTGVPSVGHWNIAEEKIINGGALDNWTSLNLS
Sbjct: 241 PIPMSNNICPVGEEGTTMTVLQYFCDMEKTGVPSVGHWNIAEEKIINGGALDNWTSLNLS 300
Query: 301 RMRPEEVQRFCSDLIQMCNATGMSFYPRPVVDFRSSHPNNIQNALRDVHRPMHSYVDCDE 360
RMRPEEVQRFCSDLIQMCNATGMSFYPRPVVDFRSSHPNNIQNALRDVHRPMHSYVDCDE
Sbjct: 301 RMRPEEVQRFCSDLIQMCNATGMSFYPRPVVDFRSSHPNNIQNALRDVHRPMHSYVDCDE 360
Query: 361 NHFYADAHCNCTVSVVPSSSNDKVAVEQEELQFASTPGNSGQGKFQVGFLLNRQTILVDT 420
NHFYADAHCNCTVSVVPSSSNDKVAVEQEELQFASTPGNSGQGKFQVGFLLNRQTILVDT
Sbjct: 361 NHFYADAHCNCTVSVVPSSSNDKVAVEQEELQFASTPGNSGQGKFQVGFLLNRQTILVDT 420
Query: 421 ENDDSVSAVIQQAIEKTNYWPKDVYYTYSMGMIDKKKMVKESHLYKGSLIFVNSRSRGGG 480
ENDDSVSAVIQQAIEKTNYWPKDVYYTYSMGMIDKKKMVKESHLYKGSLIFVNSRSRGGG
Sbjct: 421 ENDDSVSAVIQQAIEKTNYWPKDVYYTYSMGMIDKKKMVKESHLYKGSLIFVNSRSRGGG 480
Query: 481 EPPAGCERIVDRMIKANKIPLLDHIHSVKGHDPWAEWFERVNLPRSLLTSSQEWGGVLLQ 540
EPPAGCERIVDRMIKANKIPLLDHIHSVKGHDPWAEWFERVNLPRSLLTSSQEWGGVLLQ
Sbjct: 481 EPPAGCERIVDRMIKANKIPLLDHIHSVKGHDPWAEWFERVNLPRSLLTSSQEWGGVLLQ 540
Query: 541 DAAAKVGQMLALCLERAHCSGKCFGGFDIRDVYYIEYYQLIDINAPMTDFTSRRYINDWL 600
DAAAKVGQMLALCLERAHCSGKCFGGFDIRDVYYIEYYQLIDINAPMTDFTSRRYINDWL
Sbjct: 541 DAAAKVGQMLALCLERAHCSGKCFGGFDIRDVYYIEYYQLIDINAPMTDFTSRRYINDWL 600
Query: 601 SFNKIIDDHFRYTDPTSGYLSYTLYVEDFMFRISLLEDVPSTGRSWRERAVFFKNISLES 660
SFNKIIDDHFRYTDPTSGYLSYTLYVEDFMFRISLLEDVPSTGRSWRERAVFFKNISLES
Sbjct: 601 SFNKIIDDHFRYTDPTSGYLSYTLYVEDFMFRISLLEDVPSTGRSWRERAVFFKNISLES 660
Query: 661 SERRVQIVEGLVGFYRERLTSDRELFEEVLQDCGYWKRQTRTVPRMISALTYSVKNELQD 720
SERRVQIVEGLVGFYRERLTSDRELFEEVLQDCGYWKRQTRTVPRMISALTYSVKNELQD
Sbjct: 661 SERRVQIVEGLVGFYRERLTSDRELFEEVLQDCGYWKRQTRTVPRMISALTYSVKNELQD 720
Query: 721 WVPANHYFENCGYSQLYFCRCFFGHYTVPGRITKKELDTAVGILLPGHIPRAQKRLMVNY 780
WVPANHYFENCGYSQLYFCRCFFGHYTVPGRITKKELDTAVGILLPGHIPRAQKRLMVNY
Sbjct: 721 WVPANHYFENCGYSQLYFCRCFFGHYTVPGRITKKELDTAVGILLPGHIPRAQKRLMVNY 780
Query: 781 EKTQVDAAVLSPSGNTARFSVHHIFGIGSVGNDLALPQIKKALPPSQRKRKQTCDK 836
EKTQVDAAVLSPSGNTARFSVHHIFGIGSVGNDLALPQIKKALPPSQRKRKQTCDK
Sbjct: 781 EKTQVDAAVLSPSGNTARFSVHHIFGIGSVGNDLALPQIKKALPPSQRKRKQTCDK 836
>Os02g0831600 AGO1 homologous protein
Length = 1011
Score = 188 bits (477), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 97/251 (38%), Positives = 151/251 (60%), Gaps = 2/251 (0%)
Query: 16 INTKTTSSQTSRILPDELIKLHGFTTLGGKRPAYDGRESLYTNGSLPFESKESVVKVFDP 75
I + TS +R + EL+ L+ + LGG+ PAYDGR+SLYT G LPF S+E + + D
Sbjct: 179 ITPEVTSRIVNRAVIKELVNLYKASYLGGRLPAYDGRKSLYTAGPLPFTSQEFQITLLDD 238
Query: 76 EK-NAKERAQKEFKITIEIVGKTNLYHLQRFLLGKHRGIAQEIIHVFDVILSDKLSRNHV 134
+ + ER Q+ F++ I+ + +L+ L+ FL G+H QE + V D++L + S +
Sbjct: 239 DDGSGSERRQRTFRVVIKFAARADLHRLELFLAGRHAEAPQEALQVLDIVLRELPSARYA 298
Query: 135 TGPRSFLCTQIGHQGYIGDGLDSWRGYHQSLRLRKIGISLNTDMSAASFM-PVRIIQIID 193
RSF +G + +G+GL+SWRG++QS+R ++G+SLN DMSA +F+ P+ +I +
Sbjct: 299 PFGRSFFSPYLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSATAFIEPLPVIDFVA 358
Query: 194 GFLNISYTSRPLLERNRVQLKKVLCHVCIETNHHDDQIGRYKITGITPIPMSNNICPVGE 253
LN SRPL + RV++KK L V +E H + +Y+I+G+T P PV E
Sbjct: 359 QLLNSDIHSRPLSDAERVKIKKALRGVKVEVTHRGNMRRKYRISGLTIQPTRELTFPVDE 418
Query: 254 EGTTMTVLQYF 264
GT +V+QYF
Sbjct: 419 GGTVKSVVQYF 429
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 268 EKTGVPSVGHWNIAEEKIINGGALDNWTSLNLSRMRPEEVQR-FCSDLIQMCNATGMSFY 326
EK +P VG WN+ +K++NGG + +W +N +R E V R FC +L MC A+GM F
Sbjct: 540 EKDCLPRVGQWNMMNKKMVNGGKVRSWMCVNFARNVQESVVRGFCHELALMCQASGMDFA 599
Query: 327 PRPVVDFRSSHPNNIQNALR 346
P P++ ++HP+ ++ AL+
Sbjct: 600 PEPILPPLNAHPDQVERALK 619
>Os06g0729300 Similar to AGO1 homologous protein
Length = 1038
Score = 182 bits (463), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 109/326 (33%), Positives = 175/326 (53%), Gaps = 25/326 (7%)
Query: 16 INTKTTSSQTSRILPDELIKLHGFTTLGGKRPAYDGRESLYTNGSLPFESKESVVKVFDP 75
I + TS SR + +EL++LH + LGG+ PAYDGR+SLYT G LPF SKE + + +
Sbjct: 207 ITPELTSRIRSRAVMEELVRLHKMSYLGGRLPAYDGRKSLYTAGPLPFTSKEFRISLLEE 266
Query: 76 EK-NAKERAQKEFKITIEIVGKTNLYHLQRFLLGKHRGIAQEIIHVFDVILSDKLSRNHV 134
+ + ER QK + + I+ + +L+ L++FL G+ QE + V D++L + + +
Sbjct: 267 DDGSGSERRQKTYNVVIKFAARADLHRLEQFLAGRQAEAPQEALQVLDIVLRELPTARYA 326
Query: 135 TGPRSFLCTQIGHQGYIGDGLDSWRGYHQSLRLRKIGISLNTDMSAASFM-PVRIIQIID 193
RSF +G + +G+GL++WRG++QS+R ++G+SLN DMSA +F P+ +I +
Sbjct: 327 PFGRSFFSPDLGRRRSLGEGLETWRGFYQSIRPTQMGLSLNIDMSATAFFEPLPVIDFVI 386
Query: 194 GFLNISYTSRPLLERNRVQLKKVLCHVCIETNHHDDQIGRYKITGITPIPMSNNICPVGE 253
LN SRPL + RV++KK L V + H + +Y+I+G+T PV +
Sbjct: 387 QLLNTDIRSRPLSDAERVKIKKALRGVKVGVTHRGNMRRKYRISGLTSQATRELTFPVDQ 446
Query: 254 EGTTMTVLQYFCD-----MEKTGVPSVGHWNIAEE--------KIINGGALDNWTSLNLS 300
GT +V+QYF + ++ T +P + N KI+ G + N
Sbjct: 447 GGTVKSVVQYFQETYGFAIQHTYLPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNQNQI 506
Query: 301 R-------MRPEEVQRFCSDLIQMCN 319
R RP + +R D+IQM N
Sbjct: 507 RALLEETCQRPHDRER---DIIQMVN 529
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 268 EKTGVPSVGHWNIAEEKIINGGALDNWTSLNLSRMRPEEVQR-FCSDLIQMCNATGMSFY 326
EK +P VG WN+ +K++NGG + +W +N +R E V FC +L +MC A+GM F
Sbjct: 571 EKDCLPRVGQWNMMNKKMVNGGRVRSWICVNFARNVQESVASGFCRELARMCQASGMDFA 630
Query: 327 PRPVVDFRSSHPNNIQNALR 346
PV+ + P+ ++ AL+
Sbjct: 631 LEPVLPSMYARPDQVERALK 650
>Os06g0597400 Similar to ZLL/PNH homologous protein
Length = 501
Score = 179 bits (455), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 157/254 (61%), Gaps = 2/254 (0%)
Query: 16 INTKTTSSQTSRILPDELIKLHGFTTLGGKRPAYDGRESLYTNGSLPFESKESVVKVFDP 75
I + +S +R + EL++L+ + LGG+ PAYDGR++LYT G+LPF+++E VV++ D
Sbjct: 160 ITPEVSSRSVNRAIMSELVRLYHDSDLGGRLPAYDGRKNLYTAGTLPFDAREFVVRLTDD 219
Query: 76 EKNAK-ERAQKEFKITIEIVGKTNLYHLQRFLLGKHRGIAQEIIHVFDVILSDKLSRNHV 134
+ ++E+++ I+ + +L+HL++F+ G+ QE + V D++L + +R +V
Sbjct: 220 DDGTGVPPREREYRVAIKFAARADLHHLRQFIAGRQADAPQEALQVLDIVLRELANRRYV 279
Query: 135 TGPRSFLCTQIGHQGYIGDGLDSWRGYHQSLRLRKIGISLNTDMSAASFM-PVRIIQIID 193
+ RSF I +GDGL SW G++QS+R ++G+SLN DMS+ +F+ P+ +I+ +
Sbjct: 280 SIGRSFYSPDIRKPQRLGDGLQSWCGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIEFVA 339
Query: 194 GFLNISYTSRPLLERNRVQLKKVLCHVCIETNHHDDQIGRYKITGITPIPMSNNICPVGE 253
L SRPL + NR+++KK L V +E H + +Y+I+G+T P I P+ +
Sbjct: 340 QILGKDVISRPLSDANRIKIKKALRGVKVEVTHRGNVRRKYRISGLTTQPTHELIFPIDD 399
Query: 254 EGTTMTVLQYFCDM 267
+ +V++YF +M
Sbjct: 400 QMNMKSVVEYFKEM 413
>Os02g0672200 Similar to AGO1 homologous protein
Length = 1082
Score = 168 bits (425), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 88/255 (34%), Positives = 146/255 (57%), Gaps = 6/255 (2%)
Query: 16 INTKTTSSQTSRILPDELIKLHGFTTLGGKRPAYDGRESLYTNGSLPFESKESVVKVFDP 75
I + S +R + E++ + + LGG+ P YDGR+SLYT G LPF S+ V + D
Sbjct: 243 ITPEVPSRGVNRAVIGEIVTQYRQSHLGGRLPVYDGRKSLYTAGPLPFTSRTFDVILQDE 302
Query: 76 EKN-----AKERAQKEFKITIEIVGKTNLYHLQRFLLGKHRGIAQEIIHVFDVILSDKLS 130
E++ +R ++ FK+ I+ + +L+HL FL G+ QE + V D++L + +
Sbjct: 303 EESLAVGQGAQRRERPFKVVIKFAARADLHHLAMFLAGRQADAPQEALQVLDIVLRELPT 362
Query: 131 RNHVTGPRSFLCTQIGHQGYIGDGLDSWRGYHQSLRLRKIGISLNTDMSAASFM-PVRII 189
+ RSF +G + +G+GL+SWRG++QS+R ++G+SLN DMS+ +F+ P+ +I
Sbjct: 363 ARYSPVARSFYSPNLGRRQQLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVI 422
Query: 190 QIIDGFLNISYTSRPLLERNRVQLKKVLCHVCIETNHHDDQIGRYKITGITPIPMSNNIC 249
+ LN + RPL + +RV++KK L V +E H + +Y+I+G+T
Sbjct: 423 DFVAQLLNRDISVRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELSF 482
Query: 250 PVGEEGTTMTVLQYF 264
P+ GT TV+QYF
Sbjct: 483 PIDNHGTVKTVVQYF 497
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 18/176 (10%)
Query: 182 SFMPVRIIQIIDGFLNISYTSRPLLERNRVQLKKVLCHV-------CIETNHHD--DQIG 232
+++P+ + +I++G Y+ R L E+ L KV C ++T HH+ Q
Sbjct: 522 NYLPMEVCKIVEG---QRYSKR-LNEKQITALLKVTCQRPQERELDILQTVHHNAYHQDP 577
Query: 233 RYKITGITPIPMSNNICPVGEEGTTMTVLQYF-CDMEKTGVPSVGHWNIAEEKIINGGAL 291
+ GI + + V L+Y EK +P +G WN+ +K++NGG +
Sbjct: 578 YAQEFGIR---IDERLASVEARVLPPPWLKYHDSGREKDVLPRIGQWNMMNKKMVNGGRV 634
Query: 292 DNWTSLNLSRMRPEEVQR-FCSDLIQMCNATGMSFYPRPVVDFRSSHPNNIQNALR 346
+NWT +N SR + R FC +L MC +GM F PVV ++ P +++ AL+
Sbjct: 635 NNWTCINFSRHVQDNAARSFCRELAIMCQISGMDFSIDPVVPLVTARPEHVERALK 690
>Os07g0188000 Similar to Argonaute 4 protein
Length = 1052
Score = 164 bits (414), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 97/251 (38%), Positives = 144/251 (57%), Gaps = 17/251 (6%)
Query: 26 SRILPDELIKLHGFTTLGGKRPAYDGRESLYTNGSLPFESKESVVKVFDPEKNAKERAQK 85
+R++ EL +LH + LGG AYDG ++LYT G LPF+S + +K+ KE +
Sbjct: 239 NRVVMSELARLHRESHLGGISFAYDGSKALYTAGKLPFDSMDFKIKL------GKELREI 292
Query: 86 EFKITIEIVGKTNLYHLQRFLLGKHRGIAQEIIHVFDVILSDKLSRNHVTGPRSFLCTQI 145
E+K+TI G+ +L+HL F+ G+ R Q+ I DV+L + S N+V RSF T
Sbjct: 293 EYKVTIRRAGQADLHHLHEFIAGRQRDSQQQTIQALDVVLRESPSLNYVIVSRSFYSTMF 352
Query: 146 GHQGYIGDGLDSWRGYHQSLRLRKIGISLNTDMSAASFM-PVRIIQIIDGFLNISYTS-- 202
G Q IGDGL+ W+GY+QSLR ++G+SLN D+S+ F P+ +++ + L +
Sbjct: 353 GRQD-IGDGLECWKGYYQSLRPTQMGLSLNIDISSTPFFKPISVVEYVKNCLGTPTNANG 411
Query: 203 ----RPLLERNRVQLKKVLCHVCIETNHHDDQIGRYKITGITPIPMSNNICPVGEEGTTM 258
RPL + +R+++KK L V +ET H +YKIT IT P+S +GTT
Sbjct: 412 PDPRRPLSDIDRLKVKKALRGVRVETTHQGKS-SKYKITTITSEPLSQ--LNFSMDGTTQ 468
Query: 259 TVLQYFCDMEK 269
TV+QYF K
Sbjct: 469 TVIQYFSQRYK 479
Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 83/175 (47%), Gaps = 13/175 (7%)
Query: 183 FMPVRIIQIIDGFLNISYTSRPLLERNRVQLKKVLCHV-------CIETNHHDDQIGRYK 235
++P+ + I++G S+ L ++ L + C IE H++ K
Sbjct: 500 YLPMEVCTIVEG----QRYSKKLNDKQVTGLLRATCQPPQKREQKIIEMVQHNNYPAD-K 554
Query: 236 ITGITPIPMSNNICPVGEEGTTMTVLQYF-CDMEKTGVPSVGHWNIAEEKIINGGALDNW 294
+ I +SN + + L+Y EKT P VG WN+ +K++ G + W
Sbjct: 555 VVSDFRINISNQMATMPARVLPAPTLRYHDSGKEKTCNPRVGQWNMINKKMVGGAVVQKW 614
Query: 295 TSLNLSRMRPEEVQRFCSDLIQMCNATGMSFYPRPVVDFRSSHPNNIQNALRDVH 349
T +N SRM + V R C +L+ CNA GM F P ++ S+ PNNI+ AL ++H
Sbjct: 615 TCVNFSRMHIDAVHRLCGELVYTCNAIGMVFNEMPEIEVGSAAPNNIEAALSNIH 669
>Os03g0682600 Similar to Argonaute 4 protein
Length = 895
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 105/382 (27%), Positives = 172/382 (45%), Gaps = 65/382 (17%)
Query: 15 VINTKTTSSQTSRILPDELIKLHGFTTLGGKRPAYDGRESLYTNGSLPFESKESVVKVF- 73
I + S + +R + +EL++ H G + PAYDGR+ ++T G+LPF +E VVK+
Sbjct: 161 AIAPELRSRERNRNIINELLRSHKKYLDGRRSPAYDGRKGMFTAGALPFTDREFVVKIAN 220
Query: 74 DPEKNAKERAQKEFKITIEIVGKTNLY--HLQRFLLG----------KHRGI-------- 113
DPE+ + +KEFK+TI+ G NLY L++FL G KH I
Sbjct: 221 DPERG--NQGEKEFKVTIKCAGAANLYMHSLKQFLAGTYPSQDRFSHKHLDIRILIVALN 278
Query: 114 ------------AQEIIHV----FDVILSDKLSRNHVTGPRSFLCTQIGHQGYIGDGLDS 157
AQ +I ++ + D SR G R + Q
Sbjct: 279 GGEDISATTFYKAQPVIDFALDYLNMNIRDAYSRFDQDGTRVSVVQYFNRQ--------- 329
Query: 158 WRGYHQSLRLRKIGISLNTDMSAASFMPVRIIQIIDG-----FLNISYTSRPL-LERNRV 211
Y SL+ S +++P+ + +I+ G LN +R L L R
Sbjct: 330 ---YSYSLKYINWPCLQAGSDSRPTYLPMEVCRIVKGQRYSRKLNECQVTRMLRLARETP 386
Query: 212 QLKK-VLCHVCIETNHHDDQIGRYKITGITPIPMSNNICPVGEEGTTMTVLQYF-CDMEK 269
+ ++ + + E N+ +D R G+T N + V +L+Y EK
Sbjct: 387 EERENSILEIANENNYGNDYHAREFGIGVT-----NQLALVDARVLPAPMLKYHDSGQEK 441
Query: 270 TGVPSVGHWNIAEEKIINGGALDNWTSLNL-SRMRPEEVQRFCSDLIQMCNATGMSFYPR 328
PS+G WN+ ++++NGG+++ W L S +R EV+ FC +L+++CN+ GM
Sbjct: 442 VCNPSIGQWNMNNKRMLNGGSINYWACLTFASCVRLAEVRTFCKELVRVCNSIGMQITGE 501
Query: 329 PVVDFRSSHPNNIQNALRDVHR 350
P V R +++ A+RD+HR
Sbjct: 502 PCVRIRQERQDHLDAAVRDIHR 523
>Os02g0169400 Similar to Argonaute 4 protein
Length = 876
Score = 103 bits (257), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 112/205 (54%), Gaps = 5/205 (2%)
Query: 26 SRILPDELIKLHGFTTLGGKRPAYDGRESLYTNGSLPFESKESVV---KVFDPEKNAKER 82
+R + EL+K + LGG+ PAYDGR+ LYT+G LPF+S +V + D + ++
Sbjct: 81 NRAVIRELVKQQKDSGLGGRLPAYDGRKRLYTSGPLPFDSHRFLVLLDSIEDSPEESRHL 140
Query: 83 AQKEFKITIEIVGKTNLYHLQRFLLGKHRGIAQEIIHVFDVILSDKLSRNHVTGPRSFLC 142
++F +T++ K +L+ L++F GK ++ + DV+L + + + SF
Sbjct: 141 RVRDFVVTLKFAAKISLWTLRKFRGGKPNRESRAALRALDVVLKELPTARYTQFAGSFYS 200
Query: 143 TQIGHQGYIGDGLDSWRGYHQSLRLRKIGISLNTDMSAASFM-PVRIIQIIDGFLNIS-Y 200
+G + L+SWRG+HQ ++ ++G+ LN D+S++ F+ PV ++ + LN
Sbjct: 201 PNLGECRQLCKVLESWRGFHQRIQATQMGLQLNIDVSSSVFIKPVPVVDYVAQLLNEDIL 260
Query: 201 TSRPLLERNRVQLKKVLCHVCIETN 225
RPL +++K+ L + ++ N
Sbjct: 261 LDRPLCSTEFLKIKEALEGLKVQIN 285
>Os02g0616501 Argonaute and Dicer protein, PAZ domain containing protein
Length = 489
Score = 102 bits (255), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 83/306 (27%), Positives = 146/306 (47%), Gaps = 30/306 (9%)
Query: 25 TSRILPDELIKLHGFTTLGGKRPAYDGRESLYTNGSLPFESKESVVKVFDPEKNAKERAQ 84
T + + E++KLHG K P +D R+SLYT +LP S+ V+K+ D E K R +
Sbjct: 114 TKKAVLSEIVKLHGERVFRNKIPVFDTRKSLYTAHALPIVSETFVIKLDDDED--KTRTK 171
Query: 85 KEFKITIEIVGKTNLYHLQRFLLGKH--RGIAQEIIHVFDVILSDKLSRNHVTGPRSFLC 142
++TI+ + +L LQ + ++ +G Q I V V+LS LS P +
Sbjct: 172 GVHEVTIQFYKRIDLQDLQSYHTRRNASQGAIQAIDAVVRVLLSSCLS-----APGTIFS 226
Query: 143 TQIGHQGYIGDGLDSWRGYHQSLRLRKIGISLNTDM-------------SAASFMPVRII 189
T+ G +GL+ WRG ++ +RL + G LN +A + P+ ++
Sbjct: 227 TKFGPIIDTQEGLEFWRGCYKGVRLSQFGPGLNIGCLKNMVFIGTHYIPAAPFYKPLPVV 286
Query: 190 QIIDGFLNISYTSRPLLERNRVQLKKVLCHVCIETNHHDDQIGRYKITGITPIPMSNNIC 249
+ + LN + ++ +++K L V +ET H D+ RYKI G++ +P+ + +
Sbjct: 287 EFVAELLNRTDVNQLFSTEEYDKVEKALQGVFVETTHRTDKTIRYKIKGLSVVPLEDLMF 346
Query: 250 PVG-EEGTTMTVLQYFCDMEKTGVPSVGHWNIAEEKIINGGALDNWTSLNLSRMRPEEVQ 308
G +E T TV+ YF K + + +W + G + D + + + ++ P Q
Sbjct: 347 AEGAKENFTTTVVDYFQKRYKYKLKYI-YWPCLQ----CGSSRDIFLPMEVCKILPG--Q 399
Query: 309 RFCSDL 314
R+C L
Sbjct: 400 RYCRKL 405
>Os03g0682200 Similar to Argonaute-like protein (Fragment)
Length = 935
Score = 100 bits (250), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 88/356 (24%), Positives = 164/356 (46%), Gaps = 27/356 (7%)
Query: 15 VINTKTTSSQTSRILPDELIKLHGFTTLGGKRPAYDGRESLYTNGSLPFESKESVVKVFD 74
VI ++T + +R + ++L+ LH L G+ P YDGR+S+YT G LPF++K+ VVK +
Sbjct: 228 VITPESTYRERNRSIINKLVALHK-QFLDGRLPVYDGRKSIYTAGPLPFKTKDFVVKHIN 286
Query: 75 PEKNAKERAQKEFKITIEIVGKTNLYHLQRFLLGKHRGIAQEIIHVFDVILSDKLSRNHV 134
P + + ++E+K+TI+ KT+LY L++FL+G+ R + Q+ I D+ L +
Sbjct: 287 PLRGNQR--EEEYKVTIKQASKTDLYSLKQFLVGRQRELPQDTIQALDIALRE------- 337
Query: 135 TGPRSFLCTQIGHQGYIGDGLDSWRGYHQSLRLRKIGI---SLNTDMSAASFMPVRIIQI 191
P S + G + + +S+R + GI +N M + ++Q
Sbjct: 338 -CPTSVCIYLKLKKALKGVQIVATHWKEKSIRYKITGIPSAPMNELMFDLDGNRISVVQY 396
Query: 192 IDGFLNIS--YTSRPLLERNRVQLKKVL-CHVC--IETNHHDDQIGRYKITGITPIPMSN 246
N S + + P L+ K L VC +E + ++ +++T I +
Sbjct: 397 FKKQYNYSLKHVNWPCLQAGSDSRPKYLPMEVCSILEGQRYSKKLNEHQVTNILRMTCER 456
Query: 247 NICPVGEEGTTMTVLQYFCDMEKTGVPSVGHWNIAEE---KIINGGALDNWTSLNLSRMR 303
P E + + + ++ + S G+ + A+E K+ N A+ + L R++
Sbjct: 457 ---PAQRESSIIEIKTFYLYSQIVNTNSYGNDDCAKEFGIKVANQLAVVDARVLPTPRLK 513
Query: 304 PEEV--QRFCSDLIQMCNATGMSFYPRPVVDFRSSHPNNIQNALRDVHRPMHSYVD 357
+ ++ C+ + N RP VD NI+ A+R++HR +D
Sbjct: 514 YHDSGREKVCNPSVGQWNMINKQMNTRPCVDIIQGQQRNIEGAIRNIHRQSSEKLD 569
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.137 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 29,225,453
Number of extensions: 1257828
Number of successful extensions: 2544
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 2527
Number of HSP's successfully gapped: 15
Length of query: 836
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 727
Effective length of database: 11,344,475
Effective search space: 8247433325
Effective search space used: 8247433325
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 160 (66.2 bits)