Os06g0597400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ZLL/PNH homologous protein.
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Os06g0597400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ZLL/PNH homologous protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.92 | 0.373 | 9.91 | -1.37 | 1.33 | -0.622 | -0.927 | 3.39 | -0.841 | 8.13 | 20 | 1644 | -- | -- |
| 76.5 | 0.407 | 9.88 | -1.1 | 1.51 | -0.528 | -1.4 | -- | -0.736 | 8.99 | 30 | 1228 | -- | -- |
| 65.46 | 0.377 | 9.92 | -1.4 | 1.34 | -0.618 | -- | 3.55 | -0.84 | 8.12 | 20 | 1644 | -- | -- |
| 82.8 | 0.424 | 9.89 | -1.14 | 1.54 | -0.569 | -- | -- | -0.759 | 8.89 | 30.28 | 1225 | -- | -- |
| 126.55 | 0.527 | 9.89 | -0.981 | -- | -0.747 | -- | 1.61 | -0.612 | -- | 9.997 | 1567 | -- | -- |
| 83.88 | 0.429 | 9.86 | -1.02 | 1.35 | -- | -1.43 | -- | -0.631 | 8.82 | -- | -- | -- | -- |
| 90.63 | 0.446 | 9.86 | -1.07 | 1.36 | -- | -- | -- | -0.633 | 8.68 | -- | -- | -- | -- |
| 110.81 | 0.49 | 9.8 | -1 | -- | 1.58 | -- | -- | -0.566 | -- | 0.06415 | 1014 | -- | -- |
| 116.69 | 0.503 | 9.86 | -- | 1.34 | -0.364 | -- | -- | -0.587 | 8.6 | 40 | 1636 | -- | -- |
| 195.56 | 0.653 | 9.9 | -1.07 | -- | -- | -- | -- | -0.621 | -- | -- | -- | -- | -- |
| 120.79 | 0.514 | 9.84 | -- | 1.36 | -- | -- | -- | -0.514 | 8.74 | -- | -- | -- | -- |
| 116.41 | 0.503 | 9.86 | -- | -- | 2.24 | -- | -- | -0.407 | -- | 1.003e-06 | 1063 | -- | -- |
| 225.57 | 0.701 | 9.87 | -- | -- | -- | -- | -- | -0.503 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 61.21 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 2 | 61.39 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 15 |
| 3 | 61.59 | radiation | 10 | 1440 | < th | dose independent | sin | 14 | NA |
| 7 | 62.16 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 5 |
| 8 | 62.16 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 10 |
| 9 | 62.16 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 12 |
| 11 | 62.17 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 8 |
| 18 | 62.29 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 18 |
| 25 | 62.60 | radiation | 40 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 28 | 62.80 | radiation | 10 | 720 | < th | dose independent | rect. | 21 | 22 |
| 30 | 62.83 | radiation | 20 | 1440 | < th | dose independent | rect. | 15 | 22 |
| 31 | 62.84 | radiation | 10 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 37 | 62.96 | radiation | 30 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 104 | 63.58 | radiation | 10 | 1440 | < th | dose independent | rect. | 8 | 12 |
| 106 | 63.58 | radiation | 10 | 1440 | < th | dose independent | rect. | 8 | 15 |
| 140 | 63.80 | radiation | 10 | 1440 | < th | dose independent | rect. | 5 | 15 |
| 173 | 63.85 | radiation | 10 | 1440 | < th | dose independent | no | NA | NA |
| 213 | 63.90 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 392 | 64.26 | radiation | 30 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 454 | 64.46 | radiation | 30 | 1440 | < th | dose independent | rect. | 16 | 7 |
| 456 | 64.48 | radiation | 30 | 1440 | < th | dose independent | rect. | 16 | 9 |
| 458 | 64.49 | radiation | 30 | 1440 | < th | dose independent | rect. | 16 | 15 |
| 459 | 64.50 | radiation | 30 | 1440 | < th | dose independent | rect. | 16 | 5 |
| 463 | 64.53 | radiation | 20 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 472 | 64.59 | radiation | 30 | 1440 | < th | dose independent | rect. | 16 | 11 |
| 484 | 64.66 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 496 | 64.73 | radiation | 20 | 1440 | < th | dose dependent | rect. | 15 | 22 |
| 510 | 64.79 | radiation | 10 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 574 | 65.06 | humidity | 60 | 43200 | < th | dose dependent | rect. | 19 | 8 |
| 577 | 65.08 | radiation | 20 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 585 | 65.09 | radiation | 40 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 593 | 65.11 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 605 | 65.16 | radiation | 40 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 629 | 65.21 | radiation | 10 | 1440 | < th | dose dependent | sin | 0 | NA |
| 630 | 65.21 | humidity | 60 | 43200 | < th | dose dependent | rect. | 19 | 3 |
| 631 | 65.21 | radiation | 10 | 1440 | < th | dose dependent | rect. | 4 | 16 |
| 637 | 65.21 | radiation | 10 | 1440 | < th | dose dependent | rect. | 4 | 19 |
| 644 | 65.21 | radiation | 10 | 1440 | < th | dose dependent | rect. | 22 | 22 |
| 646 | 65.21 | radiation | 10 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 647 | 65.21 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 653 | 65.22 | radiation | 10 | 1440 | < th | dose dependent | no | NA | NA |
| 718 | 65.32 | radiation | 1 | 1440 | > th | dose dependent | rect. | 15 | 21 |
| 725 | 65.36 | radiation | 40 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 734 | 65.40 | radiation | 10 | 1440 | < th | dose dependent | rect. | 7 | 13 |
| 736 | 65.40 | radiation | 10 | 1440 | < th | dose dependent | rect. | 7 | 16 |
| 833 | 65.63 | radiation | 30 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 842 | 65.66 | radiation | 10 | 270 | > th | dose dependent | rect. | 10 | 3 |
| 844 | 65.67 | radiation | 40 | 14400 | < th | dose independent | rect. | 2 | 6 |
| 931 | 65.74 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 932 | 65.74 | radiation | 40 | 14400 | < th | dose independent | rect. | 22 | 10 |
| 950 | 65.78 | radiation | 1 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 974 | 65.82 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 3 |
| 984 | 65.83 | radiation | 1 | 90 | > th | dose dependent | rect. | 5 | 11 |