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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0353900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Argonaute and Dicer protein, PAZ domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.18 (0.0394) R2 : 0.599
β1 : -1.43 (0.148) R2dD : 0.1 R2D : 0.139
β2 : 2.03 (0.099) R2dC : 0.392 R2C : 0.285
β3 : -1.81 (0.16) R2dE : 0.142 R2E : 0.0648
β4 : -2.49 (0.388) R2dD*C : 0.0382 R2D*C : 0.0332
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.257 (0.0872) R2dN8 : 0.00827 R2N8 : -0.0045
σ : 0.729
deviance : 244.93
__
_____
C
peak time of C : 21.2
E
wheather : temperature
threshold : 18.5
memory length : 334
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
243.04 0.732 4.13 -1.23 1.94 -1.92 -2.69 1.49 0.309 21 18.9 257 -- --
244.93 0.729 4.18 -1.43 2.03 -1.81 -2.49 -- 0.257 21.2 18.5 334 -- --
267.88 0.762 4.13 -1.15 1.92 -1.95 -- 1.39 0.304 21.1 18.73 245 -- --
267.92 0.762 4.16 -1.39 2.06 -1.85 -- -- 0.25 21.3 18.4 357 -- --
401.62 0.938 4.03 -0.815 -- -2.36 -- 3.35 0.442 -- 18.73 245 -- --
300.24 0.812 4.23 -1.95 1.79 -- -2.39 -- -0.088 22.3 -- -- -- --
322.69 0.841 4.22 -1.86 1.8 -- -- -- -0.0845 22.5 -- -- -- --
412.48 0.946 4.09 -1.34 -- -2.4 -- -- 0.289 -- 17.2 3 -- --
286.77 0.789 4.06 -- 1.86 -1.91 -- -- 0.664 22.5 11.89 23376 -- --
521.71 1.07 4.18 -1.82 -- -- -- -- -0.0771 -- -- -- -- --
413.39 0.951 4.18 -- 1.79 -- -- -- 0.122 22.4 -- -- -- --
457.49 0.996 4.05 -- -- -2.97 -- -- 0.484 -- 15.71 3 -- --
609.42 1.15 4.13 -- -- -- -- -- 0.125 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 241.76 temperature 20 270 > th dose dependent rect. 7 23
5 242.93 temperature 15 270 > th dose dependent rect. 22 23
14 243.80 temperature 20 270 > th dose dependent rect. 19 23
15 243.85 temperature 20 270 > th dose dependent no NA NA
20 244.01 temperature 20 270 > th dose dependent rect. 11 23
24 244.42 temperature 30 30 < th dose dependent rect. 3 23
39 244.98 temperature 30 270 < th dose dependent rect. 15 23
41 245.19 temperature 30 270 < th dose dependent rect. 3 23
44 245.24 temperature 30 270 < th dose dependent no NA NA
53 245.40 temperature 30 270 < th dose dependent rect. 13 23
68 246.04 temperature 30 270 < th dose dependent rect. 10 23
73 246.20 temperature 30 270 < th dose dependent rect. 24 23
87 246.64 temperature 30 270 < th dose dependent rect. 8 23
94 246.87 temperature 30 270 < th dose dependent rect. 5 23
105 247.10 temperature 30 270 < th dose dependent rect. 21 23
107 247.17 temperature 20 270 > th dose dependent rect. 13 23
293 249.25 temperature 30 720 < th dose dependent rect. 8 21
396 249.96 temperature 20 1440 > th dose dependent rect. 23 15
416 250.06 temperature 30 30 < th dose dependent rect. 21 23
447 250.28 temperature 20 1440 > th dose dependent sin 4 NA
500 250.55 temperature 20 1440 > th dose dependent rect. 7 5
516 250.65 temperature 30 30 < th dose dependent rect. 11 23
519 250.67 temperature 20 1440 > th dose dependent rect. 5 7
553 250.80 temperature 25 1440 > th dose dependent rect. 11 1
666 251.21 temperature 25 1440 > th dose independent rect. 7 20
746 251.44 temperature 20 4320 > th dose dependent rect. 24 1
901 251.92 temperature 25 1440 < th dose independent rect. 7 20