BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0257500 Os03g0257500|AK058775
(193 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0257500 Protein of unknown function DUF292, eukaryotic... 359 e-100
Os03g0257300 300 5e-82
Os03g0257600 Protein of unknown function DUF292, eukaryotic... 173 6e-44
Os03g0710000 Protein of unknown function DUF292, eukaryotic... 109 1e-24
Os01g0687700 Protein of unknown function DUF292, eukaryotic... 92 3e-19
Os09g0547200 Protein of unknown function DUF292, eukaryotic... 87 1e-17
Os01g0706400 Protein of unknown function DUF292, eukaryotic... 82 2e-16
Os08g0175200 Protein of unknown function DUF292, eukaryotic... 72 2e-13
Os02g0159200 Protein of unknown function DUF292, eukaryotic... 65 2e-11
>Os03g0257500 Protein of unknown function DUF292, eukaryotic domain containing
protein
Length = 193
Score = 359 bits (921), Expect = e-100, Method: Compositional matrix adjust.
Identities = 178/193 (92%), Positives = 178/193 (92%)
Query: 1 MGFLHRXXXXXXXXXXXXXXXAVLRIATARRPHLARKSIATDDVRQLLTLDHLDRAIHRA 60
MGFLHR AVLRIATARRPHLARKSIATDDVRQLLTLDHLDRAIHRA
Sbjct: 1 MGFLHRKTSKQTSKLKTLLGLAVLRIATARRPHLARKSIATDDVRQLLTLDHLDRAIHRA 60
Query: 61 EQVIAEDNMLEAFEMIEMYCKRLIEHAAKLDKPGECTDEIREAAASVMFAAGWCSELPEL 120
EQVIAEDNMLEAFEMIEMYCKRLIEHAAKLDKPGECTDEIREAAASVMFAAGWCSELPEL
Sbjct: 61 EQVIAEDNMLEAFEMIEMYCKRLIEHAAKLDKPGECTDEIREAAASVMFAAGWCSELPEL 120
Query: 121 LFARTILADKFGSDFTEAAKDGTGIVDPMLVWKLSSDAKSMELKRKVTKEIAMENNIIVD 180
LFARTILADKFGSDFTEAAKDGTGIVDPMLVWKLSSDAKSMELKRKVTKEIAMENNIIVD
Sbjct: 121 LFARTILADKFGSDFTEAAKDGTGIVDPMLVWKLSSDAKSMELKRKVTKEIAMENNIIVD 180
Query: 181 FSELQDAIKDEED 193
FSELQDAIKDEED
Sbjct: 181 FSELQDAIKDEED 193
>Os03g0257300
Length = 189
Score = 300 bits (767), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 149/193 (77%), Positives = 159/193 (82%), Gaps = 4/193 (2%)
Query: 1 MGFLHRXXXXXXXXXXXXXXXAVLRIATARRPHLARKSIATDDVRQLLTLDHLDRAIHRA 60
MGFLHR A+ RIA RRP LARKSIATDDVRQLLTL HLDRAIHRA
Sbjct: 1 MGFLHRKTSKQTGKLKTLLGLAISRIAAVRRPRLARKSIATDDVRQLLTLGHLDRAIHRA 60
Query: 61 EQVIAEDNMLEAFEMIEMYCKRLIEHAAKLDKPGECTDEIREAAASVMFAAGWCSELPEL 120
EQVI E NMLEAFEMIEMY KRLIE+AAKLDKPGECT+EIREAAA+VM AGWC ELPEL
Sbjct: 61 EQVIGEGNMLEAFEMIEMYYKRLIENAAKLDKPGECTEEIREAAAAVMLVAGWCGELPEL 120
Query: 121 LFARTILADKFGSDFTEAAKDGTGIVDPMLVWKLSSDAKSMELKRKVTKEIAMENNIIVD 180
FARTILADKFGSDF EAAKDGTGIVDPM+ W+L+ SMELK+KVTKEIAMENNI+VD
Sbjct: 121 PFARTILADKFGSDFAEAAKDGTGIVDPMVFWQLN----SMELKKKVTKEIAMENNIVVD 176
Query: 181 FSELQDAIKDEED 193
FSELQDA+KD ED
Sbjct: 177 FSELQDAVKDGED 189
>Os03g0257600 Protein of unknown function DUF292, eukaryotic domain containing
protein
Length = 568
Score = 173 bits (439), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 94/181 (51%), Positives = 116/181 (64%), Gaps = 29/181 (16%)
Query: 32 PHLARKSIATDDVRQLLTLDHLDRAIHR----------------------------AEQV 63
P L R+SIA DV QLL++ HLDRA+ R AEQV
Sbjct: 34 PRLGRRSIARGDVAQLLSIGHLDRALLRVCPCHAFALPDTRRDSSANSSRRVLFLQAEQV 93
Query: 64 IAEDNMLEAFEMIEMYCKRLIEHAAKLDKPGECTDEIREAAASVMFAAGWCSELPELLFA 123
I EDNMLE +++E+YCK LIE A +LDKP EC +EI+EAAA +MFA+ C +LPELL A
Sbjct: 94 IDEDNMLEVLDIVELYCKILIEQATQLDKPKECGEEIKEAAAGLMFASARCGDLPELLDA 153
Query: 124 RTILADKFGSDFTEAAKDGT-GIVDPMLVWKLSSDAKSMELKRKVTKEIAMENNIIVDFS 182
R ILADKFG DF AAKDG G+VDP LV KLS S E K+++TK IA EN+I+++F
Sbjct: 154 RAILADKFGRDFAAAAKDGAHGVVDPTLVRKLSGAPASTEQKQRLTKVIAAENDILLEFP 213
Query: 183 E 183
E
Sbjct: 214 E 214
>Os03g0710000 Protein of unknown function DUF292, eukaryotic domain containing
protein
Length = 355
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 97/159 (61%), Gaps = 4/159 (2%)
Query: 22 AVLRIATARRPHLARKSIATDDVRQLLTLDHLDRAIHRAEQVIAEDNMLEAFEMIEMYCK 81
AV R+ R R + A DV QLL L H DRA+ RAEQVI E N L+AF M+E YC
Sbjct: 26 AVTRLGVLRGHRQVRCAQARGDVEQLLRLGHPDRALLRAEQVIREQNTLDAFLMLESYCN 85
Query: 82 RLIEHAAKLDKPGECTDEIREAAASVMFAAGWCSELPELLFARTILADKFGSDFTEAA-- 139
+ E AA +D EC +E+REAAA +++AA C ++PEL + ++A KFG +F +A
Sbjct: 86 LITERAALVDSHRECPEELREAAAGLIYAAARCGDVPELQEVKRLMAAKFGREFVSSAAE 145
Query: 140 -KDGTGIVDPMLVWKLSSDAKSMELKRKVTKEIAMENNI 177
+ G GI + +V KLS+ S+E ++ V +EIA E I
Sbjct: 146 LRSGCGI-NAKIVQKLSTKQPSLESRQMVLQEIAAEKGI 183
>Os01g0687700 Protein of unknown function DUF292, eukaryotic domain containing
protein
Length = 319
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 75/119 (63%), Gaps = 4/119 (3%)
Query: 59 RAEQVIAEDNMLEAFEMIEMYCKRLIEHAAKLDKPGECTDEIREAAASVMFAAGWCSELP 118
R E +I E N+L A+E++E++C+ ++ ++ EC E+REA AS++FA+G CS+LP
Sbjct: 61 RVEHIIREQNILAAYEIVELFCEFVLARVPIVEVQKECPFELREAIASIIFASGRCSDLP 120
Query: 119 ELLFARTILADKFGSDFTEAA---KDGTGIVDPMLVWKLSSDAKSMELKRKVTKEIAME 174
EL+ RT+ K+G +F AA + +G V+ ++ KLS A S E K KV K IA E
Sbjct: 121 ELMHLRTLFTTKYGKEFVAAAMELRPDSG-VNRTIIEKLSVKAPSAESKLKVLKAIAQE 178
>Os09g0547200 Protein of unknown function DUF292, eukaryotic domain containing
protein
Length = 476
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 85/154 (55%), Gaps = 3/154 (1%)
Query: 43 DVRQLLTLDHLDRAIHRAEQVIAEDNMLEAFEMIEMYCKRLIEHAAKLDKPGECTDEIRE 102
D+ LL D A R E VI E N++ A E+I+++C+ ++ + K EC +++E
Sbjct: 64 DIAALLRDRQEDTARIRVEHVIREQNIMAANEIIDLFCELIVTRLPIIAKQKECPADLKE 123
Query: 103 AAASVMFAAGWCSELPELLFARTILADKFGSDFTEAAKD--GTGIVDPMLVWKLSSDAKS 160
S++FAA CSELPEL R + K+G DF AA D V+ +L+ KLS S
Sbjct: 124 GICSLIFAAPRCSELPELGRIRDLFEKKYGKDFVSAAVDLRPDACVNNLLIEKLSVKKPS 183
Query: 161 MELKRKVTKEIAMENNIIVDFSEL-QDAIKDEED 193
+ K K+ KEIA E+ I D +E Q+ +K E+
Sbjct: 184 GQTKLKILKEIAKEHQIDWDMTETEQELLKPSEE 217
>Os01g0706400 Protein of unknown function DUF292, eukaryotic domain containing
protein
Length = 1101
Score = 82.0 bits (201), Expect = 2e-16, Method: Composition-based stats.
Identities = 57/178 (32%), Positives = 94/178 (52%), Gaps = 9/178 (5%)
Query: 24 LRIATARRPHLA-RKSIATDDVR----QLLTLDHLDRAIHRAEQVIAEDNMLEAFEMIEM 78
LR+A AR L RK + +R QLL D A R E VI E+ ++A+++IE+
Sbjct: 25 LRMALARIKLLRNRKEVQVRQMRREVAQLLEADQDQTARIRVEHVIREEKFMQAYDLIEV 84
Query: 79 YCKRLIEHAAKLDKPGECTDEIREAAASVMFAAGWCSELPELLFARTILADKFGSDFTEA 138
YC+ ++ + +D C +++EA ASV+FA+ CS++ EL R K+G +F A
Sbjct: 85 YCELMVARMSIIDSQKTCPIDLKEAIASVIFASMRCSDVTELADVRKHFTSKYGKEFAAA 144
Query: 139 A---KDGTGIVDPMLVWKLSSDAKSMELKRKVTKEIAMENNIIVDFSELQDAIKDEED 193
A + +G V +++ KLS+ A + K K IA E+NI + ++ + + D
Sbjct: 145 ALEVRPDSG-VSRLVIEKLSAGAPDTQTKIKTLTSIAEEHNIKWEPKAFEEKLPKQND 201
>Os08g0175200 Protein of unknown function DUF292, eukaryotic domain containing
protein
Length = 561
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 87/154 (56%), Gaps = 3/154 (1%)
Query: 43 DVRQLLTLDHLDRAIHRAEQVIAEDNMLEAFEMIEMYCKRLIEHAAKLDKPGECTDEIRE 102
D+ +LL A R E +I E+NM+ A E++E++C+ + ++ EC +++E
Sbjct: 49 DIAKLLEAGQEATARIRVEHIIREENMMAAQEILELFCELIAVRLPIIETQKECPIDLKE 108
Query: 103 AAASVMFAAGWCSELPELLFARTILADKFGSDFTEAAKD--GTGIVDPMLVWKLSSDAKS 160
A +S+ FAA C++LPEL+ + + A K+G +F AA + V+ ++ LS A
Sbjct: 109 AISSICFAAPRCADLPELMQVQMMFATKYGKEFVAAATELMPDCGVNRQIIELLSIRAPP 168
Query: 161 MELKRKVTKEIAMENNIIVDFSELQ-DAIKDEED 193
+++K K+ KEIA E+ I D S + + +K ED
Sbjct: 169 VDVKMKLLKEIAEEHEIDWDPSATETEYLKPHED 202
>Os02g0159200 Protein of unknown function DUF292, eukaryotic domain containing
protein
Length = 675
Score = 65.5 bits (158), Expect = 2e-11, Method: Composition-based stats.
Identities = 49/164 (29%), Positives = 75/164 (45%), Gaps = 7/164 (4%)
Query: 25 RIATARRPHLARKSIATDDVRQLLTLDHLDRAIHRAEQVIAEDNMLEAFEMIEMYCKRLI 84
R+ RR A DV L+ A R E +I E N ++MIE YC+ ++
Sbjct: 24 RLDLVRRKKQAMVKFMKKDVADLIGNRLESHAFGRMEALIVEMNQASCYDMIEQYCEYIV 83
Query: 85 EHAAKLDKPGECTDEIREAAASVMFAAGWCSELPELLFARTILADKFGSDFTEAAKDGTG 144
+ L K EC E EA ++++FA ELPEL R + +++GS F E
Sbjct: 84 KQLNNLQKQNECPQEALEAVSTLIFATARFPELPELCDLRHMFTERYGS-FVEP------ 136
Query: 145 IVDPMLVWKLSSDAKSMELKRKVTKEIAMENNIIVDFSELQDAI 188
V V KL + + + E K +V + IA E ++ + L+ I
Sbjct: 137 FVSSEFVQKLQNKSFTNEEKLQVMQSIAEEFSVPFNSKALERKI 180
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.134 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,453,067
Number of extensions: 200340
Number of successful extensions: 524
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 519
Number of HSP's successfully gapped: 10
Length of query: 193
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 98
Effective length of database: 12,075,471
Effective search space: 1183396158
Effective search space used: 1183396158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)