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Os01g0706400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF292, eukaryotic domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11 (0.014) R2 : 0.359
β1 : 0.75 (0.0513) R2dD : 0.312 R2D : 0.203
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.272 (0.0299) R2dN8 : 0.156 R2N8 : 0.0468
σ : 0.263
deviance : 31.65
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
21.01 0.215 11 0.757 0.312 0.571 0.415 0.203 0.304 20.6 80.05 1461 -- --
21.05 0.214 11 0.774 0.312 0.584 0.426 -- 0.307 20.6 80.23 1460 -- --
21.56 0.216 11 0.747 0.307 0.571 -- 0.268 0.303 20.8 80.09 1460 -- --
21.62 0.217 11 0.759 0.31 0.583 -- -- 0.307 20.8 80.21 1460 -- --
27.01 0.242 11 0.74 -- 0.592 -- 0.259 0.309 -- 80.01 1460 -- --
25.14 0.235 11 0.765 0.326 -- 0.42 -- 0.275 20.6 -- -- -- --
25.69 0.237 11 0.75 0.323 -- -- -- 0.274 20.9 -- -- -- --
27.04 0.242 11 0.759 -- 0.618 -- -- 0.307 -- 80.19 1462 -- --
35.37 0.277 11 -- 0.349 0.494 -- -- 0.382 21.1 80.95 7347 -- --
31.65 0.263 11 0.75 -- -- -- -- 0.272 -- -- -- -- --
40.53 0.298 11 -- 0.322 -- -- -- 0.191 21 -- -- -- --
40.87 0.298 11 -- -- 0.51 -- -- 0.374 -- 83 7285 -- --
46.49 0.318 11 -- -- -- -- -- 0.189 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 19.72 temperature 20.0 720 > th dose dependent sin 7 NA
3 19.81 temperature 20.0 720 > th dose dependent rect. 21 16
5 19.86 precipitation 0.1 43200 > th dose dependent rect. 19 1
9 19.96 precipitation 0.1 43200 > th dose independent rect. 19 1
15 20.00 precipitation 0.1 43200 < th dose independent rect. 19 1
16 20.00 precipitation 0.1 43200 < th dose dependent rect. 19 1
43 20.26 humidity 80.0 1440 > th dose dependent rect. 10 4
115 20.54 humidity 60.0 43200 > th dose independent rect. 9 1
118 20.55 humidity 80.0 14400 > th dose independent rect. 13 2
119 20.55 radiation 1.0 1440 < th dose dependent rect. 18 2
120 20.55 radiation 1.0 1440 < th dose dependent rect. 18 10
126 20.56 radiation 1.0 1440 < th dose dependent rect. 18 8
149 20.62 humidity 80.0 1440 > th dose dependent rect. 9 6
156 20.63 temperature 20.0 720 > th dose independent rect. 4 3
162 20.64 precipitation 0.1 14400 > th dose dependent rect. 16 2
171 20.66 precipitation 0.1 14400 < th dose independent rect. 16 2
172 20.66 precipitation 0.1 14400 < th dose dependent rect. 16 2
176 20.67 precipitation 0.1 14400 > th dose independent rect. 16 2
177 20.67 humidity 90.0 14400 > th dose dependent rect. 19 9
178 20.68 radiation 1.0 43200 > th dose independent rect. 17 1
186 20.70 humidity 60.0 43200 < th dose independent rect. 9 1
187 20.70 humidity 80.0 14400 < th dose independent rect. 13 2
198 20.72 wind 3.0 43200 < th dose dependent rect. 20 9
205 20.73 humidity 80.0 43200 > th dose independent rect. 6 1
206 20.73 radiation 1.0 43200 < th dose independent rect. 17 1
224 20.75 radiation 1.0 43200 < th dose independent rect. 17 13
234 20.77 humidity 80.0 43200 > th dose dependent rect. 19 1
241 20.78 radiation 1.0 43200 > th dose independent rect. 17 13
266 20.80 temperature 30.0 720 < th dose dependent rect. 19 15
298 20.82 temperature 30.0 720 < th dose dependent sin 10 NA
302 20.83 humidity 90.0 43200 < th dose independent rect. 20 1
316 20.85 humidity 80.0 1440 > th dose independent rect. 10 4
319 20.85 humidity 80.0 1440 > th dose dependent sin 0 NA
326 20.86 radiation 1.0 43200 > th dose independent rect. 17 15
334 20.87 wind 1.0 43200 > th dose independent rect. 24 2
337 20.87 humidity 90.0 14400 > th dose dependent rect. 23 3
344 20.88 humidity 90.0 14400 > th dose independent rect. 20 1
345 20.88 humidity 90.0 43200 < th dose independent rect. 5 3
347 20.88 humidity 80.0 43200 > th dose independent rect. 4 4
349 20.88 humidity 80.0 14400 > th dose independent rect. 13 5
350 20.88 humidity 90.0 43200 < th dose independent rect. 4 6
351 20.88 humidity 90.0 14400 > th dose independent rect. 19 10
353 20.88 humidity 80.0 1440 > th dose independent rect. 9 12
356 20.88 humidity 80.0 1440 < th dose independent rect. 22 22
357 20.88 humidity 80.0 1440 > th dose independent rect. 22 23
362 20.88 humidity 80.0 1440 > th dose dependent rect. 9 10
374 20.89 humidity 80.0 43200 > th dose dependent rect. 5 6
379 20.90 humidity 80.0 1440 > th dose independent sin 22 NA
382 20.90 humidity 80.0 1440 < th dose independent rect. 10 4
398 20.91 humidity 80.0 1440 > th dose independent rect. 9 17
400 20.91 humidity 80.0 1440 > th dose independent rect. 3 18
409 20.92 radiation 1.0 43200 < th dose independent sin 11 NA
417 20.92 humidity 80.0 1440 < th dose independent rect. 8 18
419 20.92 humidity 80.0 1440 > th dose independent rect. 1 20
422 20.92 radiation 1.0 43200 < th dose dependent rect. 17 1
434 20.93 humidity 80.0 1440 < th dose independent sin 22 NA
435 20.93 radiation 1.0 43200 > th dose independent sin 11 NA
443 20.93 humidity 80.0 1440 < th dose independent rect. 10 10
461 20.93 wind 9.0 43200 > th dose dependent rect. 19 2
473 20.94 precipitation 0.1 14400 > th dose independent rect. 13 6
500 20.95 precipitation 0.1 14400 > th dose independent rect. 11 8
532 20.95 humidity 80.0 1440 > th dose dependent rect. 4 15
536 20.96 radiation 1.0 43200 > th dose independent rect. 5 3
537 20.96 radiation 1.0 43200 < th dose independent rect. 5 3
612 20.97 humidity 90.0 14400 > th dose independent rect. 19 5
617 20.97 precipitation 0.1 14400 < th dose independent rect. 13 6
621 20.97 precipitation 0.1 14400 < th dose independent rect. 11 8
634 20.97 humidity 80.0 1440 < th dose independent rect. 3 17
649 20.97 precipitation 0.1 14400 < th dose dependent rect. 13 6
651 20.97 precipitation 0.1 14400 < th dose dependent rect. 11 8
657 20.97 humidity 80.0 1440 > th dose dependent rect. 3 18
676 20.98 humidity 80.0 1440 > th dose independent rect. 3 21
762 21.00 humidity 80.0 43200 < th dose independent rect. 6 1
794 21.00 humidity 80.0 1440 > th dose independent rect. 19 23
796 21.00 humidity 80.0 1440 < th dose independent rect. 10 23
797 21.00 humidity 90.0 14400 > th dose dependent sin 12 NA
799 21.00 precipitation 0.1 14400 > th dose dependent rect. 13 6
800 21.00 radiation 1.0 43200 < th dose dependent rect. 23 7
814 21.01 temperature 20.0 720 > th dose independent sin 6 NA
816 21.01 humidity 90.0 43200 < th dose independent rect. 22 1
857 21.01 wind 5.0 43200 < th dose dependent rect. 12 1
858 21.01 radiation 1.0 43200 < th dose dependent rect. 1 5
867 21.01 humidity 90.0 720 > th dose dependent rect. 6 16
873 21.02 humidity 80.0 1440 > th dose independent no NA NA
892 21.02 humidity 80.0 1440 < th dose independent rect. 19 23
893 21.02 radiation 1.0 43200 < th dose dependent rect. 5 1
899 21.02 wind 3.0 43200 < th dose dependent rect. 23 5
908 21.02 wind 3.0 43200 < th dose dependent rect. 20 17
929 21.03 humidity 90.0 43200 < th dose independent rect. 3 9
970 21.03 humidity 80.0 1440 > th dose independent rect. 17 23
978 21.03 precipitation 0.1 14400 > th dose dependent rect. 11 8
993 21.04 humidity 80.0 1440 < th dose independent no NA NA
999 21.04 radiation 1.0 4320 > th dose independent rect. 17 2