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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0257500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF292, eukaryotic domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.43 (0.0737) R2 : 0.441
β1 : -5.6 (0.502) R2dD : 1.38 R2D : -0.325
β2 : 0.652 (0.121) R2dC : 0.0349 R2C : -0.0171
β3 : 2.43 (0.233) R2dE : 0.427 R2E : -0.24
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -12 (1.81) R2dD*E : 0.522 R2D*E : -0.988
γ1 : -0.154 (0.136) R2dN8 : 0.00406 R2N8 : -0.07
σ : 0.868
deviance : 347.19
__
_____
C
peak time of C : 6.54
E
wheather : temperature
threshold : 26.96
memory length : 5573
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
347.14 0.875 4.41 -5.23 0.654 2.21 -0.578 -9.93 -0.227 6.6 25.87 5610 -- --
367.79 0.893 4.24 -3.65 0.679 2.16 -0.602 -- -0.378 6.52 11.8 14268 -- --
347.19 0.868 4.43 -5.6 0.652 2.43 -- -12 -0.154 6.54 26.96 5573 -- --
368.74 0.894 4.24 -3.67 0.678 2.16 -- -- -0.379 6.47 12.12 14273 -- --
368.14 0.894 4.44 -5.59 -- 2.42 -- -11.9 -0.147 -- 27.07 5624 -- --
437.73 0.981 4.05 -2.09 0.7 -- -0.604 -- 0.485 6.28 -- -- -- --
438.61 0.981 4.05 -2.1 0.698 -- -- -- 0.487 6.18 -- -- -- --
390.32 0.92 4.21 -3.3 -- 2.1 -- -- -0.159 -- 10.75 10000 -- --
532.5 1.07 3.99 -- 0.598 0.648 -- -- 0.767 6.57 28 1274 -- --
463.87 1.01 4.06 -2.08 -- -- -- -- 0.502 -- -- -- -- --
554.8 1.1 4 -- 0.669 -- -- -- 0.721 6.34 -- -- -- --
553.68 1.1 4 -- -- 0.698 -- -- 0.794 -- 27.9 1293 -- --
578.02 1.12 4.01 -- -- -- -- -- 0.733 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 328.50 temperature 30 43200 < th dose independent rect. 15 1
2 328.64 temperature 30 43200 > th dose independent rect. 15 1
12 329.88 temperature 25 43200 > th dose independent rect. 2 9
16 329.96 temperature 25 43200 < th dose independent rect. 5 5
18 329.97 temperature 25 43200 < th dose independent rect. 3 8
19 329.98 temperature 25 43200 > th dose independent rect. 7 2
21 330.01 temperature 25 43200 < th dose independent rect. 7 2
23 330.02 temperature 25 43200 > th dose independent rect. 4 6
27 330.08 temperature 30 43200 < th dose independent rect. 14 17
29 330.09 temperature 25 14400 > th dose dependent sin 13 NA
31 330.10 temperature 30 43200 < th dose independent rect. 14 8
32 330.10 temperature 30 43200 < th dose independent rect. 14 14
38 330.11 temperature 30 43200 < th dose independent rect. 14 11
41 330.11 temperature 25 43200 > th dose dependent rect. 17 1
70 330.33 temperature 25 14400 > th dose dependent rect. 16 14
73 330.35 temperature 25 14400 > th dose dependent rect. 16 11
91 330.56 temperature 30 14400 > th dose independent rect. 12 1
114 330.67 temperature 25 14400 < th dose independent rect. 23 11
179 330.98 temperature 25 43200 > th dose dependent sin 16 NA
203 331.06 temperature 25 43200 > th dose dependent rect. 4 19
257 331.13 temperature 25 43200 > th dose dependent no NA NA
284 331.14 temperature 25 43200 > th dose dependent rect. 21 23
376 331.25 temperature 25 43200 > th dose dependent rect. 10 1
382 331.26 temperature 25 43200 > th dose independent sin 7 NA
401 331.28 temperature 25 14400 < th dose independent sin 9 NA
436 331.35 temperature 25 43200 > th dose dependent sin 4 NA
437 331.35 temperature 25 43200 > th dose dependent rect. 4 9
442 331.36 temperature 25 43200 > th dose dependent rect. 8 4
474 331.43 temperature 25 14400 > th dose independent rect. 23 1
592 331.61 temperature 25 14400 > th dose independent sin 11 NA
600 331.62 temperature 30 43200 < th dose independent sin 15 NA
667 331.80 temperature 25 14400 < th dose independent rect. 23 1
675 331.84 temperature 30 43200 > th dose independent sin 15 NA