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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0547200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF292, eukaryotic domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.85 (0.0289) R2 : 0.0109
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.136 (0.0608) R2dN8 : 0.014 R2N8 : 0.0109
σ : 0.544
deviance : 135.97
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
114.95 0.504 2.82 0.236 0.143 0.106 0.0147 4.84 0.175 6.04 0.1495 4 -- --
122.45 0.519 2.84 0.223 0.0833 1.02 0.468 -- 0.187 3.07 0.1495 4 -- --
114.95 0.499 2.82 0.236 0.143 0.106 -- 4.84 0.175 6.08 0.1415 4 -- --
122.63 0.519 2.84 0.205 0.123 1.07 -- -- 0.184 5.87 5.054e-07 3 -- --
115.98 0.502 2.82 0.235 -- 0.148 -- 4.78 0.177 -- 0.1234 4 -- --
131.07 0.537 2.84 0.285 0.148 -- 0.684 -- 0.167 2.86 -- -- -- --
132.28 0.539 2.84 0.269 0.178 -- -- -- 0.162 4.69 -- -- -- --
123.41 0.52 2.84 0.207 -- 1.1 -- -- 0.187 -- 0.06438 3 -- --
123.73 0.521 2.84 -- 0.125 1.11 -- -- 0.162 5.85 0.06043 3 -- --
133.97 0.541 2.84 0.275 -- -- -- -- 0.167 -- -- -- -- --
134.19 0.542 2.85 -- 0.183 -- -- -- 0.132 4.65 -- -- -- --
124.53 0.521 2.84 -- -- 1.14 -- -- 0.165 -- 0.06438 3 -- --
135.97 0.544 2.85 -- -- -- -- -- 0.136 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 115.30 wind 1 10 < th dose dependent rect. 24 2
4 117.74 wind 3 10 < th dose dependent rect. 22 5
29 118.81 wind 1 10 < th dose independent rect. 24 2
34 118.91 wind 3 270 < th dose dependent rect. 22 1
59 119.63 wind 1 10 < th dose independent rect. 23 4
70 119.89 wind 1 10 < th dose dependent sin 13 NA
76 119.96 atmosphere 1000 10 > th dose dependent rect. 22 5
87 120.13 temperature 25 30 < th dose dependent rect. 22 5
113 120.38 temperature 20 90 < th dose independent rect. 22 1
129 120.55 atmosphere 1000 270 > th dose dependent rect. 22 1
181 120.82 wind 3 90 < th dose dependent rect. 14 12
205 121.03 humidity 90 30 > th dose dependent rect. 23 4
260 121.31 wind 3 270 < th dose independent rect. 22 1
261 121.31 wind 3 90 < th dose dependent rect. 17 9
272 121.40 temperature 20 10 < th dose dependent rect. 24 1
344 121.68 atmosphere 1005 270 > th dose independent rect. 22 1
350 121.75 temperature 20 10 < th dose independent rect. 23 4
481 122.14 wind 1 10 < th dose dependent no NA NA
526 122.22 wind 1 10 < th dose dependent rect. 1 23
531 122.24 atmosphere 1005 90 > th dose independent rect. 22 4
534 122.26 wind 1 270 < th dose independent rect. 21 3
654 122.72 humidity 50 720 < th dose dependent rect. 14 1
678 122.80 wind 3 90 < th dose dependent sin 15 NA
700 122.86 humidity 90 90 > th dose independent rect. 23 3
702 122.86 atmosphere 1005 30 > th dose dependent rect. 16 11
717 122.88 wind 1 10 < th dose independent sin 13 NA
867 123.15 humidity 90 270 > th dose independent rect. 23 1
868 123.15 atmosphere 1015 270 < th dose independent rect. 23 23
876 123.16 atmosphere 1005 10 > th dose dependent rect. 22 12
980 123.38 wind 1 10 > th dose independent sin 14 NA