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Os03g0710000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF292, eukaryotic domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.4 (0.0192) R2 : 0.482
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.998 (0.0485) R2dC : 0.482 R2C : 0.479
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0613 (0.0404) R2dN8 : 0.00337 R2N8 : 0.000599
σ : 0.362
deviance : 60.05
__
_____
C
peak time of C : 3.49
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
47.35 0.323 12.4 0.584 0.482 -0.621 -0.327 0.0508 0.0512 5.03 10 264 -- --
47.31 0.32 12.4 0.59 0.485 -0.617 -0.337 -- 0.0477 5.03 10.02 260 -- --
47.29 0.32 12.4 0.559 0.513 -0.579 -- 0.165 0.0536 5 10.25 234 -- --
47.32 0.32 12.4 0.577 0.514 -0.595 -- -- 0.0601 5.12 10.02 231 -- --
53.93 0.342 12.3 0.698 -- -0.992 -- 0.709 0.189 -- 10.01 378 -- --
53.9 0.344 12.4 0.481 0.989 -- -0.0609 -- -0.00798 3.5 -- -- -- --
53.91 0.344 12.4 0.482 0.989 -- -- -- -0.00762 3.49 -- -- -- --
53.93 0.342 12.3 0.673 -- -1.03 -- -- 0.15 -- 10.01 378 -- --
54.47 0.344 12.4 -- 0.476 -0.555 -- -- 0.0166 5.14 8.26 230 -- --
108.6 0.487 12.4 0.524 -- -- -- -- 0.0186 -- -- -- -- --
60.05 0.362 12.4 -- 0.998 -- -- -- -0.0613 3.49 -- -- -- --
58.52 0.356 12.4 -- -- -0.962 -- -- -0.0137 -- 4.792 431 -- --
115.84 0.502 12.4 -- -- -- -- -- -0.0395 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 42.88 temperature 10.0 270 > th dose dependent rect. 6 10
11 44.63 radiation 30.0 90 < th dose dependent rect. 4 18
16 44.75 atmosphere 995.0 270 > th dose dependent rect. 17 2
17 44.78 temperature 15.0 90 > th dose dependent rect. 9 8
18 44.82 atmosphere 995.0 90 > th dose dependent rect. 17 5
20 44.84 atmosphere 1000.0 270 > th dose independent rect. 17 2
23 44.87 atmosphere 995.0 90 > th dose dependent rect. 4 18
24 44.92 precipitation 0.1 270 < th dose independent rect. 19 22
25 44.92 precipitation 0.1 270 < th dose dependent rect. 19 22
26 44.94 temperature 10.0 90 > th dose dependent rect. 22 19
34 45.11 atmosphere 1000.0 90 > th dose independent rect. 17 5
36 45.14 temperature 15.0 270 > th dose independent rect. 6 10
38 45.20 radiation 40.0 90 < th dose dependent rect. 11 11
42 45.26 radiation 20.0 90 < th dose dependent rect. 9 13
44 45.28 temperature 25.0 270 > th dose independent rect. 7 8
49 45.31 temperature 30.0 90 < th dose dependent rect. 4 18
57 45.38 temperature 25.0 270 > th dose dependent rect. 21 18
61 45.41 radiation 10.0 270 > th dose independent rect. 6 10
76 45.43 humidity 90.0 270 < th dose independent rect. 7 9
77 45.43 radiation 10.0 90 < th dose independent rect. 4 18
85 45.52 atmosphere 995.0 10 > th dose dependent rect. 17 6
87 45.53 wind 9.0 270 < th dose independent rect. 19 22
89 45.54 wind 7.0 270 < th dose independent rect. 21 18
99 45.63 radiation 10.0 270 < th dose dependent rect. 4 15
109 45.67 humidity 70.0 90 > th dose dependent rect. 4 18
126 45.74 radiation 30.0 270 < th dose dependent rect. 17 2
135 45.78 precipitation 0.1 90 < th dose independent rect. 22 19
137 45.78 precipitation 0.1 90 < th dose dependent rect. 22 19
138 45.79 atmosphere 1000.0 10 > th dose independent rect. 17 6
144 45.79 radiation 20.0 270 < th dose dependent rect. 2 19
145 45.80 temperature 10.0 270 > th dose independent rect. 17 2
147 45.80 atmosphere 1010.0 270 < th dose independent rect. 17 2
149 45.80 radiation 20.0 270 < th dose independent rect. 17 2
152 45.80 temperature 25.0 270 > th dose independent rect. 2 13
153 45.80 temperature 10.0 270 > th dose independent rect. 19 22
157 45.81 wind 9.0 270 < th dose independent rect. 17 2
161 45.82 radiation 10.0 270 < th dose dependent rect. 8 11
163 45.83 atmosphere 995.0 90 > th dose independent rect. 22 19
167 45.84 humidity 70.0 90 > th dose independent rect. 4 18
202 45.92 humidity 90.0 90 < th dose independent rect. 9 9
204 45.92 radiation 40.0 90 < th dose independent rect. 4 18
211 45.93 radiation 10.0 90 < th dose dependent rect. 15 7
220 45.96 temperature 15.0 90 > th dose independent rect. 22 19
230 45.98 radiation 10.0 90 < th dose independent rect. 11 11
231 45.98 radiation 10.0 90 < th dose dependent rect. 13 9
246 46.01 wind 9.0 270 < th dose dependent rect. 17 2
247 46.01 radiation 20.0 90 < th dose dependent rect. 17 5
257 46.03 radiation 10.0 90 < th dose independent rect. 17 5
293 46.10 radiation 1.0 270 < th dose independent rect. 4 15
306 46.12 radiation 10.0 10 < th dose dependent rect. 5 18
308 46.13 temperature 10.0 90 > th dose independent rect. 17 5
310 46.13 atmosphere 1010.0 90 < th dose independent rect. 17 5
315 46.13 radiation 10.0 90 < th dose independent rect. 15 7
317 46.14 humidity 50.0 270 > th dose independent rect. 20 21
327 46.16 wind 1.0 270 > th dose independent rect. 17 2
328 46.16 wind 9.0 90 < th dose independent rect. 17 5
329 46.16 atmosphere 1010.0 270 < th dose independent rect. 15 6
331 46.16 temperature 30.0 90 < th dose dependent rect. 4 10
335 46.17 radiation 10.0 90 < th dose independent rect. 13 9
346 46.19 atmosphere 1000.0 270 > th dose independent rect. 15 6
358 46.21 radiation 1.0 10 < th dose dependent rect. 17 6
361 46.22 humidity 50.0 270 > th dose independent rect. 21 18
370 46.24 temperature 15.0 270 > th dose independent rect. 15 6
371 46.24 radiation 30.0 270 < th dose independent rect. 15 6
379 46.24 radiation 1.0 10 < th dose dependent rect. 7 16
385 46.25 radiation 1.0 10 < th dose dependent rect. 11 12
409 46.29 humidity 50.0 270 > th dose independent rect. 17 2
410 46.29 wind 9.0 270 < th dose independent rect. 6 10
432 46.31 precipitation 0.1 270 < th dose independent rect. 17 2
436 46.31 atmosphere 1000.0 90 > th dose independent rect. 4 18
437 46.31 precipitation 0.1 270 < th dose dependent rect. 17 2
439 46.31 radiation 1.0 10 < th dose dependent rect. 13 10
442 46.32 humidity 50.0 90 > th dose independent rect. 17 5
457 46.33 radiation 40.0 1440 < th dose dependent rect. 24 5
490 46.37 precipitation 0.1 270 < th dose independent rect. 6 10
495 46.37 precipitation 0.1 270 < th dose dependent rect. 6 10
508 46.39 wind 1.0 90 > th dose independent rect. 17 5
509 46.39 wind 9.0 270 < th dose independent rect. 15 6
510 46.39 radiation 10.0 270 < th dose independent rect. 2 19
518 46.40 radiation 40.0 270 < th dose independent rect. 11 10
522 46.40 atmosphere 995.0 270 > th dose independent rect. 16 14
524 46.40 wind 7.0 270 < th dose independent rect. 20 20
540 46.42 wind 5.0 90 < th dose independent rect. 22 6
541 46.42 precipitation 0.1 90 < th dose independent rect. 22 6
545 46.42 precipitation 0.1 90 < th dose dependent rect. 22 6
552 46.43 temperature 25.0 270 < th dose independent rect. 2 10
570 46.46 atmosphere 995.0 10 > th dose independent rect. 23 18
611 46.50 radiation 30.0 270 < th dose independent rect. 13 8
650 46.54 humidity 50.0 270 > th dose independent rect. 12 14
651 46.54 radiation 30.0 270 < th dose independent rect. 16 14
652 46.54 wind 7.0 10 < th dose independent rect. 23 18
676 46.56 temperature 10.0 90 > th dose independent rect. 22 6
677 46.56 temperature 30.0 90 < th dose independent rect. 22 6
678 46.56 humidity 50.0 90 > th dose independent rect. 22 6
681 46.56 atmosphere 995.0 90 > th dose independent rect. 22 6
683 46.56 radiation 1.0 90 < th dose independent rect. 22 6
694 46.56 temperature 10.0 90 > th dose independent rect. 4 18
695 46.56 atmosphere 1015.0 90 < th dose independent rect. 4 18
699 46.56 radiation 1.0 90 < th dose dependent rect. 22 6
718 46.58 radiation 10.0 270 > th dose independent sin 1 NA
737 46.59 radiation 30.0 90 < th dose dependent rect. 17 20
754 46.61 atmosphere 1015.0 270 < th dose independent rect. 6 10
756 46.61 temperature 10.0 270 > th dose independent rect. 16 14
763 46.62 wind 1.0 270 > th dose independent rect. 15 6
766 46.62 temperature 25.0 270 > th dose dependent sin 5 NA
767 46.62 radiation 10.0 270 < th dose dependent sin 0 NA
787 46.64 wind 9.0 90 < th dose dependent rect. 22 6
799 46.65 wind 9.0 270 < th dose independent rect. 16 14
813 46.66 wind 1.0 270 > th dose independent rect. 16 14
814 46.66 humidity 50.0 90 > th dose dependent rect. 22 6
821 46.67 humidity 50.0 270 > th dose independent rect. 6 10
822 46.67 temperature 25.0 270 < th dose independent rect. 3 16
858 46.70 radiation 20.0 90 > th dose independent rect. 12 23
890 46.72 temperature 10.0 270 > th dose independent rect. 20 20
925 46.76 atmosphere 995.0 270 > th dose independent rect. 20 20
955 46.79 atmosphere 1000.0 10 > th dose independent rect. 5 18