BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0215800 Os03g0215800|AK071308
(450 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0215800 Pyridoxal-5\'-phosphate-dependent enzyme, beta... 829 0.0
Os12g0625000 Cysteine synthase (EC 2.5.1.47) (O-acetylserin... 104 1e-22
Os01g0814800 Similar to Cysteine synthase, chloroplast prec... 94 2e-19
Os03g0747800 Cysteine synthase (EC 2.5.1.47) (O-acetylserin... 93 4e-19
Os04g0165700 Cysteine synthase (EC 2.5.1.47) 90 4e-18
Os01g0978100 Similar to Cysteine synthase, mitochondrial pr... 83 4e-16
Os06g0149700 Cysteine synthase (EC 4.2.99.8) 82 9e-16
Os06g0564600 80 2e-15
Os06g0564700 Similar to Cysteine synthase (EC 4.2.99.8) 80 3e-15
Os06g0564500 Cysteine synthase (EC 4.2.99.8) 75 8e-14
>Os03g0215800 Pyridoxal-5\'-phosphate-dependent enzyme, beta subunit domain
containing protein
Length = 450
Score = 829 bits (2142), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/427 (94%), Positives = 402/427 (94%)
Query: 24 HRDGAKLPWVGPXXXXXXXXXXXXXXKGLVEAIGNTPLIRINSLSDATGCEILGKAEFLN 83
HRDGAKLPWVGP KGLVEAIGNTPLIRINSLSDATGCEILGKAEFLN
Sbjct: 24 HRDGAKLPWVGPTTRSSRSSGRRTRRKGLVEAIGNTPLIRINSLSDATGCEILGKAEFLN 83
Query: 84 PGGSVKDRVAVKIIEEALESGDLLCGGTVTEGSAGSTAISLAIVAPAYGCKCHVVIPDDA 143
PGGSVKDRVAVKIIEEALESGDLLCGGTVTEGSAGSTAISLAIVAPAYGCKCHVVIPDDA
Sbjct: 84 PGGSVKDRVAVKIIEEALESGDLLCGGTVTEGSAGSTAISLAIVAPAYGCKCHVVIPDDA 143
Query: 144 AIEKSQIIEALGATVERVRPVSITHRDHFVNIARRRALEANKSAAAQRESRYKETNGSAH 203
AIEKSQIIEALGATVERVRPVSITHRDHFVNIARRRALEANKSAAAQRESRYKETNGSAH
Sbjct: 144 AIEKSQIIEALGATVERVRPVSITHRDHFVNIARRRALEANKSAAAQRESRYKETNGSAH 203
Query: 204 VNTRIMHSKITASKGESNKALTNCSANSEIQYNGKCDHDSDSKGGFFADQFENMANYRAH 263
VNTRIMHSKITASKGESNKALTNCSANSEIQYNGKCDHDSDSKGGFFADQFENMANYRAH
Sbjct: 204 VNTRIMHSKITASKGESNKALTNCSANSEIQYNGKCDHDSDSKGGFFADQFENMANYRAH 263
Query: 264 YEWTGPEIWQQSKGTLHAFVXXXXXXXXXXXVSRYLKEKNTNIKCFLMDPPGSGLFNKVT 323
YEWTGPEIWQQSKGTLHAFV VSRYLKEKNTNIKCFLMDPPGSGLFNKVT
Sbjct: 264 YEWTGPEIWQQSKGTLHAFVAAAGTGGTIAGVSRYLKEKNTNIKCFLMDPPGSGLFNKVT 323
Query: 324 RGVMYTKEEAEGKRLKNPFDTITEGIGINRVTKNFMMAELDGAYRGTDREAVEMSRFLLK 383
RGVMYTKEEAEGKRLKNPFDTITEGIGINRVTKNFMMAELDGAYRGTDREAVEMSRFLLK
Sbjct: 324 RGVMYTKEEAEGKRLKNPFDTITEGIGINRVTKNFMMAELDGAYRGTDREAVEMSRFLLK 383
Query: 384 NDGLFVGSSSAMNCVGAVRVAQDLGPGHTIVTILCDSGMRHLSKFFNDQYLANHGLTPTA 443
NDGLFVGSSSAMNCVGAVRVAQDLGPGHTIVTILCDSGMRHLSKFFNDQYLANHGLTPTA
Sbjct: 384 NDGLFVGSSSAMNCVGAVRVAQDLGPGHTIVTILCDSGMRHLSKFFNDQYLANHGLTPTA 443
Query: 444 TGLEFLD 450
TGLEFLD
Sbjct: 444 TGLEFLD 450
>Os12g0625000 Cysteine synthase (EC 2.5.1.47) (O-acetylserine sulfhydrylase) (O-
acetylserine (Thiol)-lyase) (CSase) (OAS-TL)
Length = 321
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 101/382 (26%), Positives = 147/382 (38%), Gaps = 83/382 (21%)
Query: 50 KGLVEAIGNTPLIRINSLSDATGCEILGKAEFLNPGGSVKDRVAVKIIEEALESGDLLCG 109
K + E IGNTPL+ +N ++D + K E + P SVKDR+ +I +A E G + G
Sbjct: 7 KDVTELIGNTPLVYLNRVTDGCVGRVAAKLESMEPCSSVKDRIGYSMITDAEEKGLITPG 66
Query: 110 GTV-TEGSAGSTAISLAIVAPAYGCKCHVVIPDDAAIEKSQIIEALGATVERVRPVSITH 168
+V E ++G+T I LA +A A G
Sbjct: 67 KSVLIEPTSGNTGIGLAFMAAAKGY----------------------------------- 91
Query: 169 RDHFVNIARRRALEANKSAAAQRESRYKETNGSAHVNTRIMHSKITASKGESNKALTNCS 228
R L S + +R K + ++ K K E A TN S
Sbjct: 92 ---------RLVLTMPASMSMERRIILKAFGAELILTDPLLGMKGAVQKAEELAAKTNNS 142
Query: 229 ANSEIQYNGKCDHDSDSKGGFFADQFENMANYRAHYEWTGPEIWQQSKGTLHAFVXXXXX 288
F QFEN AN + HYE TGPEIW+ + G + V
Sbjct: 143 --------------------FILQQFENPANPKIHYETTGPEIWKGTGGKVDGLVSGIGT 182
Query: 289 XXXXXXVSRYLKEKNTNIKCFLMDPPGSGLFNKVTRGVMYTKEEAEGKRLKNPFDTITEG 348
RYL+E+N +IK + ++P S + + GK P +G
Sbjct: 183 GGTITGAGRYLREQNPDIKIYGVEPVESAVLSG-------------GK----PGPHKIQG 225
Query: 349 IGINRVTKNFMMAELDGAYRGTDREAVEMSRFLLKNDGLFVGSSSAMNCVGAVRVAQ-DL 407
IG V + ++ + + EA+EM++ L +GL VG SS AVR+AQ
Sbjct: 226 IGAGFVPGVLDVDLINETVQVSSDEAIEMAKALALKEGLLVGISSGAAAAAAVRLAQRPE 285
Query: 408 GPGHTIVTILCDSGMRHLSKFF 429
G V + G R+LS
Sbjct: 286 NEGKLFVVVFPSFGERYLSSVL 307
>Os01g0814800 Similar to Cysteine synthase, chloroplast precursor (EC 2.5.1.47)
(O-acetylserine sulfhydrylase) (O-acetylserine
(Thiol)-lyase) (CSase B) (CS-B) (OAS-TL B)
Length = 392
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 92/382 (24%), Positives = 147/382 (38%), Gaps = 93/382 (24%)
Query: 50 KGLVEAIGNTPLIRINSLSDATGCEILGKAEFLNPGGSVKDRVAVKIIEEALESGDLLCG 109
+ + + IG TP++ +N++ D I K E++ P SVKDR+ + +I +A E G +
Sbjct: 88 QDVTQLIGKTPMVYLNNVVDGCVANIAAKLEYMGPCRSVKDRIGLSMINDAEEKGLIFPN 147
Query: 110 GTV-TEGSAGSTAISLAIVAPAYGCKCHVVIPDDAAIEKSQIIEALGATVERVRPVSITH 168
T+ E + G+T I LA VA A G K +P +E+ ++ A GA + P
Sbjct: 148 KTILVEPTTGNTGIGLASVAAARGYKLIATVPSSIDVERCVLLRAFGAEIVLTDP----- 202
Query: 169 RDHFVNIARRRALEANKSAAAQRESRYKETNGSAHVNTRIMHSKITASKGESNKALTNCS 228
N + AL+ + ++ + Y M + N S
Sbjct: 203 -----NKGLKGALDKAEEIVSKTPNAY-------------MFQQF------------NNS 232
Query: 229 ANSEIQYNGKCDHDSDSKGGFFADQFENMANYRAHYEWTGPEIWQQSKGTLHAFVXXXXX 288
ANSEI H++ TGPEIW+ + GT+ V
Sbjct: 233 ANSEI-----------------------------HFQTTGPEIWEDTLGTVDILVASIGT 263
Query: 289 XXXXXXVSRYLKEKNTNIKCFLMDPPGSGLFNKVTRGVMYTKEEAEGKRLKNPFDTITEG 348
RYLK N +IK ++P + + + G + + + +
Sbjct: 264 GGTITGTGRYLKMMNKDIKVIGVEPAETSVISGDNAGYIPSILDVQ-------------- 309
Query: 349 IGINRVTKNFMMAELDGAYRGTDREAVEMSRFLLKNDGLFVGSSSAMNCVGAVRVAQ-DL 407
LD + T EAV+++R L +GL VG SS V A+ VA+
Sbjct: 310 -------------LLDEVVKVTTTEAVDVARELALKEGLLVGISSGAATVAAINVAKRPE 356
Query: 408 GPGHTIVTILCDSGMRHLSKFF 429
G I I G R++S
Sbjct: 357 NAGKLIAVIFPSFGERYISSIL 378
>Os03g0747800 Cysteine synthase (EC 2.5.1.47) (O-acetylserine sulfhydrylase) (O-
acetylserine (Thiol)-lyase) (CSase) (OAS-TL)
Length = 325
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 98/376 (26%), Positives = 151/376 (40%), Gaps = 83/376 (22%)
Query: 56 IGNTPLIRINSLSDATGCEILGKAEFLNPGGSVKDRVAVKIIEEALESGDLLCGGTV-TE 114
IGNTPL+ +N + D +I K E + P SVKDR+ +I +A E G + G +V E
Sbjct: 16 IGNTPLVYLNKVVDGCEAQIAAKLEIMEPCSSVKDRIGYSMITDAEEKGLITPGKSVLIE 75
Query: 115 GSAGSTAISLAIVAPAYGCKCHVVIPDDAAIEKSQIIEALGATVERVRPVSITHRDHFVN 174
++G+T I LA +A A G K + +P ++E+ I++A GA + P+
Sbjct: 76 PTSGNTGIGLAFMAAAKGYKLILTMPASMSMERRIILKAFGAELVLTDPL---------- 125
Query: 175 IARRRALEANKSAAAQRESRYKETNGSAHVNTRIMHSKITASKGESNKALTNCSANSEIQ 234
+ + A++ AA+ + Y I+ AN +I
Sbjct: 126 LGMKGAIQKADELAAKMPNSY------------ILQQ-------------FENPANPKIH 160
Query: 235 YNGKCDHDSDSKGGFFADQFENMANYRAHYEWTGPEIWQQSKGTLHAFVXXXXXXXXXXX 294
Y E TGPEIW+ + G + V
Sbjct: 161 Y-----------------------------ETTGPEIWKATAGKVDILVSGIGTGGTVTG 191
Query: 295 VSRYLKEKNTNIKCFLMDPPGSGLFNKVTRGVMYTKEEAEGKRLKNPFDTITEGIGINRV 354
+YLKE+N IK + ++P S + + G R P +GIG V
Sbjct: 192 TGKYLKEQNPEIKIYGVEPTESAILS--------------GGR---PGPHKIQGIGAGFV 234
Query: 355 TKNFMMAELDGAYRGTDREAVEMSRFLLKNDGLFVGSSSAMNCVGAVRVAQ-DLGPGHTI 413
+ LD + + EA+ M++ L +GL VG SS V A+RVAQ G +
Sbjct: 235 PGVLDVNLLDEVVQVSSDEAISMAKQLALKEGLLVGISSGAAAVAAIRVAQRPENKGKLV 294
Query: 414 VTILCDSGMRHLSKFF 429
V + G R+LS
Sbjct: 295 VVVFPSFGERYLSSVL 310
>Os04g0165700 Cysteine synthase (EC 2.5.1.47)
Length = 377
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 86/188 (45%), Gaps = 18/188 (9%)
Query: 249 FFADQFENMANYRAHYEWTGPEIWQQSKGTLHAFVXXXXXXXXXXXVSRYLKEKNTNIKC 308
F QFEN AN + HYE TGPEIW+ + G + FV V +YLKEKN N K
Sbjct: 196 FMLQQFENPANVKVHYETTGPEIWEDTLGQVDIFVMGIGSGGTVTGVGKYLKEKNPNAKI 255
Query: 309 FLMDPPGSGLFNKVTRGVMYTKEEAEGKRLKNPFDTITEGIGINRVTKNFMMAELDGAYR 368
+ ++P + + N G P G+G N + E +
Sbjct: 256 YGVEPAEANVLNGGKPG---------------PHLITGNGVGFKPEILNMDIMEKVIEVK 300
Query: 369 GTDREAVEMSRFLLKNDGLFVGSSSAMNCVGAVRVAQDL-GPGHTIVTILCDSGMRHLSK 427
G D AV+M+R L +GL VG SS N V A+ +A+ G IVT+L G R+LS
Sbjct: 301 GED--AVKMARELALKEGLLVGISSGANTVAALELAKKPENKGKLIVTVLPSLGERYLSS 358
Query: 428 FFNDQYLA 435
++ A
Sbjct: 359 ALFEELRA 366
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 62/111 (55%), Gaps = 1/111 (0%)
Query: 54 EAIGNTPLIRINSLSDATGCEILGKAEFLNPGGSVKDRVAVKIIEEALESGDLLCGG-TV 112
+ IG TP++ +N +++ G I K EFL P SVKDR A+ ++E+A + G + G T+
Sbjct: 64 QLIGRTPMVYLNKVTEGCGARIAAKLEFLQPSFSVKDRPAISMLEDAEKKGLITPGKTTL 123
Query: 113 TEGSAGSTAISLAIVAPAYGCKCHVVIPDDAAIEKSQIIEALGATVERVRP 163
E ++G+ I LA +A G + + +P ++E+ + A GA + P
Sbjct: 124 IEPTSGNMGIGLAFMAALKGYELILTMPSYTSLERRVTMRAFGAKLVLTDP 174
>Os01g0978100 Similar to Cysteine synthase, mitochondrial precursor (EC 2.5.1.47)
(O- acetylserine sulfhydrylase) (O-acetylserine
(Thiol)-lyase) (CSase C) (CS-C) (OAS-TL C) (AtCS-C)
Length = 394
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 81/183 (44%), Gaps = 18/183 (9%)
Query: 248 GFFADQFENMANYRAHYEWTGPEIWQQSKGTLHAFVXXXXXXXXXXXVSRYLKEKNTNIK 307
+ QF+N AN + HYE TGPEIW+ SKG + F+ R+LKEKN IK
Sbjct: 214 AYMLQQFDNPANPKVHYETTGPEIWEDSKGKVDVFIGGIGTGGTISGAGRFLKEKNPGIK 273
Query: 308 CFLMDPPGSGLFNKVTRGVMYTKEEAEGKRLKNPFDTITEGIGINRVTKNFMMAELDGAY 367
++P S + + GK P +GIG V +N LD
Sbjct: 274 VIGIEPSESNILSG-------------GK----PGPHKIQGIGAGFVPRNLDSEVLDEVI 316
Query: 368 RGTDREAVEMSRFLLKNDGLFVGSSSAMNCVGAVRVAQ-DLGPGHTIVTILCDSGMRHLS 426
+ EAVE ++ L +GL VG SS A++VA+ G +V + G R+LS
Sbjct: 317 EISSDEAVETAKQLALQEGLLVGISSGAAAAAAIKVAKRPENAGKLVVVVFPSFGERYLS 376
Query: 427 KFF 429
Sbjct: 377 SIL 379
>Os06g0149700 Cysteine synthase (EC 4.2.99.8)
Length = 339
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 84/176 (47%), Gaps = 18/176 (10%)
Query: 252 DQFENMANYRAHYEWTGPEIWQQSKGTLHAFVXXXXXXXXXXXVSRYLKEKNTNIKCFLM 311
DQF+N AN AH+ WTGPEIW+ + G + FV V +YLK KN +K +
Sbjct: 165 DQFKNAANPEAHFVWTGPEIWKDTAGKVDIFVAGSGTGGTISGVGKYLKMKNPAVKVICV 224
Query: 312 DPPGSGLFNKVTRGVMYTKEEAEGKRLKNPFDTITEGIGINRVTKNFMMAELDGAYRGTD 371
+P S + + GK P +G+G V KN ++ +D T
Sbjct: 225 EPAESPVISG-------------GK----PSRHKIQGMGPGFVPKNLDISIVDEIITVTA 267
Query: 372 REAVEMSRFLLKNDGLFVGSSSAMNCVGAVRVA-QDLGPGHTIVTILCDSGMRHLS 426
++A+ ++ L + +GL VG SS N ++VA + G IVTI G R+++
Sbjct: 268 QDAMANAKRLAREEGLLVGISSGANLAACLKVASRKEYEGKMIVTIFPSGGERYMN 323
>Os06g0564600
Length = 284
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 86/186 (46%), Gaps = 23/186 (12%)
Query: 246 KGGFFADQFENMANYRAHYEWTGPEIWQQSKGTLHAFVXXXXXXXXXXXVSRYLKEKNTN 305
K + DQ N AN AHY+WTGPEIW+ + G + FV V +YLKEKN +
Sbjct: 111 KNSYNLDQMVNEANVEAHYKWTGPEIWKDTAGKVDIFVTSVGSGGTLAGVGKYLKEKNQS 170
Query: 306 IKCFLMDPPGSGLFNKVTRGVMYTKEEAEGKRLKNPFDTITEGIG----INRVTKNFMMA 361
I+ ++P S + + GK K+ I G+G I + K +
Sbjct: 171 IRIVAVEPAESPVLSG-------------GKASKHRIQGI--GVGFETEILKAHKPIITY 215
Query: 362 ELDGAYRGTDREAVEMSRFLLKNDGLFVGSSSAMNCVGAVRV-AQDLGPGHTIVTILCDS 420
E+ Y +A+ +R L + +GL VG S+ N + + A++ G IVT+L
Sbjct: 216 EVKTIY---SEDAITKARMLAREEGLLVGISAGANIAVCLELAAKEENKGKMIVTMLPSG 272
Query: 421 GMRHLS 426
R+LS
Sbjct: 273 ADRYLS 278
>Os06g0564700 Similar to Cysteine synthase (EC 4.2.99.8)
Length = 342
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 82/182 (45%), Gaps = 19/182 (10%)
Query: 252 DQFENMANYRAHYEWTGPEIWQQSKGTLHAFVXXXXXXXXXXXVSRYLKEKNTNIKCFLM 311
+Q N AN AH++WTGPEIW+ + G + FV V RYLK KN +I +
Sbjct: 168 NQATNPANPEAHFKWTGPEIWKDTAGKVDFFVTAAGTGGTLSGVGRYLKIKNPSINIVCV 227
Query: 312 DPPGSGLFNKVTRGVMYTKEEAEGKRLKNPFDTITEGIGINRVTKNFMMAELDGAYRGTD 371
+P S + + +P +G G + K + +D +
Sbjct: 228 EPSESAVISG-----------------GSPGSHKIQGTGPGFIPKTLDRSIIDEVVTVSS 270
Query: 372 REAVEMSRFLLKNDGLFVGSSSAMNCVGAVRV-AQDLGPGHTIVTILCDSGMRHLSK-FF 429
E++ M+R L K +GL VG SS N +++ A++ G IVT+ G R++S F
Sbjct: 271 EESMAMARRLAKEEGLLVGISSGANVAACIKIAAREENKGKMIVTMFPSGGERYMSSDLF 330
Query: 430 ND 431
D
Sbjct: 331 AD 332
>Os06g0564500 Cysteine synthase (EC 4.2.99.8)
Length = 357
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 18/176 (10%)
Query: 252 DQFENMANYRAHYEWTGPEIWQQSKGTLHAFVXXXXXXXXXXXVSRYLKEKNTNIKCFLM 311
+Q N AN AH+ WTGPEIW+ + G + FV V RYLK KN +I +
Sbjct: 183 NQVTNPANPEAHFMWTGPEIWKDTAGKVDVFVASVGSGGTLTGVGRYLKMKNPSINIVCV 242
Query: 312 DPPGSGLFNKVTRGVMYTKEEAEGKRLKNPFDTITEGIGINRVTKNFMMAELDGAYRGTD 371
+P S + + +P +G G + + + +D
Sbjct: 243 EPSESPVISG-----------------GSPGPHKIQGTGAGFIPEILDKSVIDEVVTVNT 285
Query: 372 REAVEMSRFLLKNDGLFVGSSSAMNCVGAVRVA-QDLGPGHTIVTILCDSGMRHLS 426
E++ M+R L K +GL VG SS N +++A ++ G IVT+ G R+++
Sbjct: 286 EESMAMARRLAKEEGLLVGISSGANVAACIKIADREENKGKMIVTMFPSGGERYMN 341
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,725,150
Number of extensions: 541170
Number of successful extensions: 1146
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 1139
Number of HSP's successfully gapped: 13
Length of query: 450
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 346
Effective length of database: 11,605,545
Effective search space: 4015518570
Effective search space used: 4015518570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)