Os03g0215800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pyridoxal-5'-phosphate-dependent enzyme, beta subunit domain containing protein.
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Os03g0215800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pyridoxal-5'-phosphate-dependent enzyme, beta subunit domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 79.03 | 0.418 | 8.68 | -0.131 | 0.469 | 0.899 | -0.341 | -0.205 | -0.0631 | 0.4 | 21.3 | 3830 | -- | -- |
| 79.08 | 0.414 | 8.68 | -0.0763 | 0.467 | 0.917 | -0.354 | -- | -0.0488 | 0.433 | 21.4 | 3749 | -- | -- |
| 79.49 | 0.415 | 8.68 | -0.117 | 0.468 | 0.89 | -- | -0.244 | -0.0584 | 0.388 | 21.3 | 3743 | -- | -- |
| 79.61 | 0.416 | 8.67 | -0.0606 | 0.467 | 0.917 | -- | -- | -0.0468 | 0.396 | 21.31 | 3727 | -- | -- |
| 90.62 | 0.443 | 8.65 | 0.186 | -- | 0.787 | -- | -0.0148 | 0.0448 | -- | 21.8 | 978 | -- | -- |
| 99.88 | 0.469 | 8.61 | 0.458 | 0.521 | -- | -0.356 | -- | 0.25 | 0.444 | -- | -- | -- | -- |
| 100.42 | 0.469 | 8.61 | 0.472 | 0.522 | -- | -- | -- | 0.252 | 0.385 | -- | -- | -- | -- |
| 90.41 | 0.443 | 8.66 | 0.18 | -- | 0.812 | -- | -- | -0.00527 | -- | 21.9 | 976 | -- | -- |
| 79.68 | 0.416 | 8.67 | -- | 0.471 | 0.891 | -- | -- | -0.0329 | 0.423 | 21.33 | 3653 | -- | -- |
| 117.51 | 0.507 | 8.6 | 0.49 | -- | -- | -- | -- | 0.26 | -- | -- | -- | -- | -- |
| 106.29 | 0.482 | 8.62 | -- | 0.528 | -- | -- | -- | 0.199 | 0.431 | -- | -- | -- | -- |
| 91.16 | 0.445 | 8.66 | -- | -- | 0.875 | -- | -- | -0.0314 | -- | 21.8 | 979 | -- | -- |
| 123.84 | 0.519 | 8.61 | -- | -- | -- | -- | -- | 0.206 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 77.51 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 7 |
| 2 | 77.51 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 8 |
| 15 | 77.66 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 21 | 77.75 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 27 | 77.82 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 38 | 78.01 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 50 | 78.23 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 53 | 78.28 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 73 | 78.53 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 3 |
| 99 | 78.76 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 104 | 78.84 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 123 | 78.94 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 130 | 78.99 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 231 | 79.59 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 272 | 79.77 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 362 | 80.16 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 433 | 80.33 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 471 | 80.44 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 479 | 80.47 | radiation | 10 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 548 | 80.63 | temperature | 20 | 4320 | > th | dose independent | sin | 13 | NA |
| 573 | 80.72 | temperature | 20 | 4320 | < th | dose independent | sin | 13 | NA |
| 663 | 80.91 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |
| 933 | 81.41 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 948 | 81.45 | temperature | 20 | 4320 | > th | dose dependent | rect. | 19 | 2 |