BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0198500 Os03g0198500|AK071509
(247 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0198500 Protein of unknown function DUF862, eukaryotic... 479 e-136
Os02g0655500 Protein of unknown function DUF862, eukaryotic... 215 2e-56
Os03g0100900 Protein of unknown function DUF862, eukaryotic... 214 7e-56
Os06g0560400 Protein of unknown function DUF862, eukaryotic... 207 5e-54
Os04g0548000 Protein of unknown function DUF862, eukaryotic... 204 5e-53
Os06g0182100 Protein of unknown function DUF862, eukaryotic... 166 2e-41
Os10g0533900 Protein of unknown function DUF862, eukaryotic... 76 2e-14
Os06g0107000 Protein of unknown function DUF862, eukaryotic... 65 5e-11
>Os03g0198500 Protein of unknown function DUF862, eukaryotic domain containing
protein
Length = 247
Score = 479 bits (1234), Expect = e-136, Method: Compositional matrix adjust.
Identities = 229/229 (100%), Positives = 229/229 (100%)
Query: 1 MKLRPKRPGWKSLMPLQLSRKSALRFFLFPKVQAAGQSPDDTPVYLNVYDLTPMNGYVYW 60
MKLRPKRPGWKSLMPLQLSRKSALRFFLFPKVQAAGQSPDDTPVYLNVYDLTPMNGYVYW
Sbjct: 1 MKLRPKRPGWKSLMPLQLSRKSALRFFLFPKVQAAGQSPDDTPVYLNVYDLTPMNGYVYW 60
Query: 61 AGLGIFHSGIEVHGVEYAFGAHDYPSSGVFEVEPRQCPGFRFRKSIFLGTTCLDPIQVRQ 120
AGLGIFHSGIEVHGVEYAFGAHDYPSSGVFEVEPRQCPGFRFRKSIFLGTTCLDPIQVRQ
Sbjct: 61 AGLGIFHSGIEVHGVEYAFGAHDYPSSGVFEVEPRQCPGFRFRKSIFLGTTCLDPIQVRQ 120
Query: 121 FMELQSVNYNGDTYHLITKNCNHFCKDMCYKLTGNKIPKWVNRLARIGAICNCLLPESLK 180
FMELQSVNYNGDTYHLITKNCNHFCKDMCYKLTGNKIPKWVNRLARIGAICNCLLPESLK
Sbjct: 121 FMELQSVNYNGDTYHLITKNCNHFCKDMCYKLTGNKIPKWVNRLARIGAICNCLLPESLK 180
Query: 181 ISPVGHDPNSRPEDCEKRRLRNPLSCFSSISSQRQLPPSSPFPTSPVKE 229
ISPVGHDPNSRPEDCEKRRLRNPLSCFSSISSQRQLPPSSPFPTSPVKE
Sbjct: 181 ISPVGHDPNSRPEDCEKRRLRNPLSCFSSISSQRQLPPSSPFPTSPVKE 229
>Os02g0655500 Protein of unknown function DUF862, eukaryotic domain containing
protein
Length = 204
Score = 215 bits (547), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 95/158 (60%), Positives = 120/158 (75%)
Query: 35 AGQSPDDTPVYLNVYDLTPMNGYVYWAGLGIFHSGIEVHGVEYAFGAHDYPSSGVFEVEP 94
G TPV LNVYDLTP N Y+YW G G+FHSGIEVHG+EY FGAHD+PSSGVFEVE
Sbjct: 3 TGNKGTATPVLLNVYDLTPANDYLYWLGFGVFHSGIEVHGMEYGFGAHDFPSSGVFEVES 62
Query: 95 RQCPGFRFRKSIFLGTTCLDPIQVRQFMELQSVNYNGDTYHLITKNCNHFCKDMCYKLTG 154
+ CPGF +RK+++LGTT + + R F+E + Y+G++YHL++KNCNHF D+C LTG
Sbjct: 63 KSCPGFIYRKTVWLGTTDMSHGEYRSFIEKLAGKYHGNSYHLVSKNCNHFTDDVCKNLTG 122
Query: 155 NKIPKWVNRLARIGAICNCLLPESLKISPVGHDPNSRP 192
IP WVNRLAR+G+ +CLLPES+++SPVG P RP
Sbjct: 123 KPIPSWVNRLARVGSFFDCLLPESVQVSPVGRVPTLRP 160
>Os03g0100900 Protein of unknown function DUF862, eukaryotic domain containing
protein
Length = 245
Score = 214 bits (544), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 94/153 (61%), Positives = 123/153 (80%), Gaps = 2/153 (1%)
Query: 44 VYLNVYDLTPMNGYVYWAGLGIFHSGIEVHGVEYAFGAHDYPSSGVFEVEPRQCPGFRFR 103
+YLN+YD++P+N Y+YW GLGIFHSGIEVHG+EY FGAH+YP+SGVF+VEP+ CPGF FR
Sbjct: 50 LYLNIYDISPINHYLYWFGLGIFHSGIEVHGMEYGFGAHEYPTSGVFQVEPKSCPGFIFR 109
Query: 104 KSIFLGTTCLDPIQVRQFMELQSVNYNGDTYHLITKNCNHFCKDMCYKLTGNKIPKWVNR 163
+S+ +G+T + +VR F+E + +Y+GDTYHLI KNCNHF D+C +LTG IP WVNR
Sbjct: 110 RSVCVGSTDMSRSEVRSFIEDLAEDYHGDTYHLIAKNCNHFTADICKRLTGKPIPGWVNR 169
Query: 164 LARIGAICNCLLPESLKISPVGH--DPNSRPED 194
LAR+G+ CNC+LPES+K+S V DP P+D
Sbjct: 170 LARLGSFCNCVLPESIKVSAVKDVTDPPEFPDD 202
>Os06g0560400 Protein of unknown function DUF862, eukaryotic domain containing
protein
Length = 216
Score = 207 bits (527), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 89/142 (62%), Positives = 114/142 (80%)
Query: 44 VYLNVYDLTPMNGYVYWAGLGIFHSGIEVHGVEYAFGAHDYPSSGVFEVEPRQCPGFRFR 103
V LNVYDLTP+N Y++W GLGIFHS +EVHG EY+FGAHD+P+SGVFEVEP+ CPGF +R
Sbjct: 27 VVLNVYDLTPLNNYLHWCGLGIFHSAVEVHGSEYSFGAHDHPTSGVFEVEPKCCPGFMYR 86
Query: 104 KSIFLGTTCLDPIQVRQFMELQSVNYNGDTYHLITKNCNHFCKDMCYKLTGNKIPKWVNR 163
SIF+G T L+P++ R F++ + Y+GDTYHLI+KNCNHF D+ +LTG IP WVNR
Sbjct: 87 CSIFIGRTSLNPLEFRDFIQRMASEYHGDTYHLISKNCNHFTDDLSTRLTGKPIPGWVNR 146
Query: 164 LARIGAICNCLLPESLKISPVG 185
A++GA CNCLLPES+++ G
Sbjct: 147 PAKLGAFCNCLLPESMRLESTG 168
>Os04g0548000 Protein of unknown function DUF862, eukaryotic domain containing
protein
Length = 207
Score = 204 bits (519), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 90/145 (62%), Positives = 114/145 (78%)
Query: 44 VYLNVYDLTPMNGYVYWAGLGIFHSGIEVHGVEYAFGAHDYPSSGVFEVEPRQCPGFRFR 103
V +NVYDLTPMN Y+YW GLGIFHSGIEVHGVEY FGAH++P+SGVFEVEP+ CPGF +R
Sbjct: 18 VVVNVYDLTPMNNYLYWFGLGIFHSGIEVHGVEYGFGAHEFPTSGVFEVEPKNCPGFVYR 77
Query: 104 KSIFLGTTCLDPIQVRQFMELQSVNYNGDTYHLITKNCNHFCKDMCYKLTGNKIPKWVNR 163
+S+ +GTT + + R F+E + YNG++YHLI+KNCNHF D+ LTG IP WVNR
Sbjct: 78 RSVRMGTTGMSRAEFRSFIEKLTGKYNGNSYHLISKNCNHFTDDVSKNLTGKPIPGWVNR 137
Query: 164 LARIGAICNCLLPESLKISPVGHDP 188
LAR+G+ N LLP+S+++S V H P
Sbjct: 138 LARVGSFFNYLLPKSIQVSAVRHVP 162
>Os06g0182100 Protein of unknown function DUF862, eukaryotic domain containing
protein
Length = 271
Score = 166 bits (419), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 70/141 (49%), Positives = 98/141 (69%), Gaps = 7/141 (4%)
Query: 43 PVYLNVYDLTPMNGYVYWAGLGIFHSGIEVH-------GVEYAFGAHDYPSSGVFEVEPR 95
PVYLNVYD+TP NGY W GLG++HSG++ + YA+GAHD SG+FEV PR
Sbjct: 45 PVYLNVYDVTPANGYARWLGLGVYHSGVQGMYALLSSPSILYAYGAHDGAGSGIFEVAPR 104
Query: 96 QCPGFRFRKSIFLGTTCLDPIQVRQFMELQSVNYNGDTYHLITKNCNHFCKDMCYKLTGN 155
+CPG+ FR++I +GTT L +VR M + ++ GD Y+L+++NCNHFC C +L
Sbjct: 105 RCPGYAFREAILVGTTELTRAEVRAVMADLAADFPGDAYNLVSRNCNHFCDAACRRLVRA 164
Query: 156 KIPKWVNRLARIGAICNCLLP 176
+IP+WVNRLA+IG + C++P
Sbjct: 165 RIPRWVNRLAKIGVVFTCVIP 185
>Os10g0533900 Protein of unknown function DUF862, eukaryotic domain containing
protein
Length = 246
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 61/106 (57%), Gaps = 2/106 (1%)
Query: 64 GIFHSGIEVHGVE-YAFGAHDYPSSGVFEVEPRQCPGFRFRKSIFLGTTCLDPIQVRQFM 122
GIFHS ++V+G E ++FG + SGVF + P + +R+ I LG T V + +
Sbjct: 38 GIFHSAVQVYGEEEWSFGFCE-NGSGVFSCPIGKNPMYTYRECIVLGETECSIATVNRIL 96
Query: 123 ELQSVNYNGDTYHLITKNCNHFCKDMCYKLTGNKIPKWVNRLARIG 168
S + G +Y L+++NCNHFC +C +L K+P WVNR A G
Sbjct: 97 RELSREWPGHSYDLLSRNCNHFCDVLCERLAVPKLPGWVNRFANAG 142
>Os06g0107000 Protein of unknown function DUF862, eukaryotic domain containing
protein
Length = 187
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 39/69 (56%)
Query: 100 FRFRKSIFLGTTCLDPIQVRQFMELQSVNYNGDTYHLITKNCNHFCKDMCYKLTGNKIPK 159
+ +R+SI LG T V Q + S + G +Y L+++NCNHFC C KL K+P
Sbjct: 2 YTYRESIVLGKTTCSIFTVNQILRELSWKWPGGSYELLSRNCNHFCNTFCEKLDVPKLPA 61
Query: 160 WVNRLARIG 168
WVNR A G
Sbjct: 62 WVNRFANAG 70
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.139 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,888,360
Number of extensions: 383997
Number of successful extensions: 885
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 885
Number of HSP's successfully gapped: 8
Length of query: 247
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 149
Effective length of database: 11,918,829
Effective search space: 1775905521
Effective search space used: 1775905521
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)