BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0192600 Os03g0192600|AK105970
(211 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0192600 Plant lipid transfer protein/Par allergen fami... 212 2e-55
Os05g0489200 Plant lipid transfer/seed storage/trypsin-alph... 82 2e-16
Os03g0323900 Peptidase, trypsin-like serine and cysteine do... 80 1e-15
Os07g0174900 Plant lipid transfer protein/Par allergen fami... 78 6e-15
Os07g0174400 Plant lipid transfer protein/Par allergen fami... 75 3e-14
Os01g0814100 Similar to Bindin (Fragment) 74 6e-14
Os07g0175000 Plant lipid transfer protein/Par allergen fami... 73 2e-13
Os07g0625800 Plant lipid transfer protein/Par allergen fami... 73 2e-13
Os07g0175600 Plant lipid transfer protein/Par allergen fami... 68 6e-12
Os03g0385400 Plant lipid transfer protein/Par allergen fami... 64 7e-11
>Os03g0192600 Plant lipid transfer protein/Par allergen family protein
Length = 211
Score = 212 bits (539), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 108/138 (78%), Positives = 108/138 (78%)
Query: 1 MAGAGRTRSTAMAAWXXXXXXXXXXXXXMVAVLDXXXXXXXXXXXXXXXXXDCTDALLSL 60
MAGAGRTRSTAMAAW MVAVLD DCTDALLSL
Sbjct: 1 MAGAGRTRSTAMAAWSYSSLLLQLLLLSMVAVLDGAATTGGGGAGAPAPAADCTDALLSL 60
Query: 61 AGCLSYVQEGSTVAKPDAPCCSGLKGVVKKEVACLCQAFQGSQNFGVTLNMTKALQLPAA 120
AGCLSYVQEGSTVAKPDAPCCSGLKGVVKKEVACLCQAFQGSQNFGVTLNMTKALQLPAA
Sbjct: 61 AGCLSYVQEGSTVAKPDAPCCSGLKGVVKKEVACLCQAFQGSQNFGVTLNMTKALQLPAA 120
Query: 121 CKVKTPPFSKCHLSIPGV 138
CKVKTPPFSKCHLSIPGV
Sbjct: 121 CKVKTPPFSKCHLSIPGV 138
>Os05g0489200 Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor
domain containing protein
Length = 210
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 53 CTDALLSLAGCLSYVQEGSTVAKPDAPCCSGLKGVVKKEVACLCQAFQGS-QNFGVTLNM 111
C ALL+++ CL+YVQ GS +PD PCC L G+V+ CLC+ G+ ++G+ ++
Sbjct: 52 CLTALLNMSDCLTYVQNGSRARRPDKPCCPELAGLVESNPVCLCELLSGAGDSYGIAVDY 111
Query: 112 TKALQLPAACKVKTPPFSKC 131
++AL LPA C+V TPP S C
Sbjct: 112 SRALALPAICRVSTPPVSTC 131
>Os03g0323900 Peptidase, trypsin-like serine and cysteine domain containing
protein
Length = 199
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 49/80 (61%)
Query: 52 DCTDALLSLAGCLSYVQEGSTVAKPDAPCCSGLKGVVKKEVACLCQAFQGSQNFGVTLNM 111
DCT ALL+L+ CL+YV+ ST+ +PD CC L GVV E ACLC G +GV ++
Sbjct: 51 DCTGALLNLSSCLTYVEYRSTLTRPDKGCCGALAGVVDGEAACLCGLVGGYGAYGVRVDA 110
Query: 112 TKALQLPAACKVKTPPFSKC 131
+AL LP C+V PP C
Sbjct: 111 VRALALPTICRVDAPPPRLC 130
>Os07g0174900 Plant lipid transfer protein/Par allergen family protein
Length = 171
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 52/81 (64%), Gaps = 3/81 (3%)
Query: 53 CTDALLSLAGCLSYVQEGSTVAKPDAPCCSGLKGVVKKEVACLCQAFQG-SQNFGVTLNM 111
CT ++SLA CL Y+Q ++P A CC+ L VVK CLC G + + GVT+N
Sbjct: 31 CTSEMVSLAPCLDYMQ--GNASRPTASCCAALSSVVKSRPECLCAVLGGGASSLGVTVNT 88
Query: 112 TKALQLPAACKVKTPPFSKCH 132
T+AL+LPAAC VKTPP S+C
Sbjct: 89 TRALELPAACGVKTPPPSECS 109
>Os07g0174400 Plant lipid transfer protein/Par allergen family protein
Length = 131
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Query: 53 CTDALLSLAGCLSYVQEGSTVAKPDAPCCSGLKGVVKKEVACLCQAFQG-SQNFGVTLNM 111
C ++SLA CL Y+ S+ KP CC+ L VV + ACLC G + + GVT+N
Sbjct: 39 CMTEIISLASCLGYMSGNSSAPKPS--CCTALSSVVTSKPACLCAVLGGGASSLGVTINN 96
Query: 112 TKALQLPAACKVKTPPFSKC 131
T+AL+LPAAC VKTPP S+C
Sbjct: 97 TRALELPAACNVKTPPASQC 116
>Os01g0814100 Similar to Bindin (Fragment)
Length = 187
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Query: 53 CTDALLSLAGCLSYVQEGSTVAKPDAPCCSGLKGVVKKEVACLCQAFQ-GSQNFGVTLNM 111
C DA+L+++ CL+YV GST KPD PCC L G+++ + CLCQ G+ ++ ++++
Sbjct: 45 CMDAVLNMSDCLTYVMNGSTARKPDEPCCPELAGLLESKPVCLCQLLAGGASSYDISVDY 104
Query: 112 TKALQLPAACKVKTPPFSKCHL 133
+A+ LP C + PP + C L
Sbjct: 105 KRAMALPGICGLAAPPVTACAL 126
>Os07g0175000 Plant lipid transfer protein/Par allergen family protein
Length = 181
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 52/80 (65%), Gaps = 3/80 (3%)
Query: 53 CTDALLSLAGCLSYVQEGSTVAKPDAPCCSGLKGVVKKEVACLCQAFQGSQ-NFGVTLNM 111
C+ +++L+ CL Y+ S + P+ CC+ L GVV+ + CLC GS +FG+++N
Sbjct: 37 CSSVMMTLSPCLDYISGKSPI--PEFTCCTTLAGVVQSDPRCLCMVLDGSAASFGISINH 94
Query: 112 TKALQLPAACKVKTPPFSKC 131
T+AL+LP CKV+ PP S+C
Sbjct: 95 TRALELPGVCKVQAPPISQC 114
>Os07g0625800 Plant lipid transfer protein/Par allergen family protein
Length = 177
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Query: 52 DCTDALLSLAGCLSYVQEGSTVAKPDAPCCSGLKGVVKKE--VACLCQAFQGSQNFGVTL 109
DC ++ +LAGCL+Y+ GS A+P CC+G+K + VACLC A Q+FG+ +
Sbjct: 36 DCGSSITALAGCLTYITPGSPEARPAKDCCAGVKSALGSPAAVACLCGAL--GQDFGIKI 93
Query: 110 NMTKALQLPAACKVKTPPFSKCHLSIPG 137
N T+A LPAAC + SKC+ PG
Sbjct: 94 NYTRAAALPAACGGDSSALSKCNKKFPG 121
>Os07g0175600 Plant lipid transfer protein/Par allergen family protein
Length = 170
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query: 53 CTDALLSLAGCLSYVQEGSTVAKPDAPCCSGLKGVVKKEVACLCQAFQG-SQNFGVTLNM 111
CT LLS++ CL+Y+ T P A CC L VVK + CLC A + G+++N
Sbjct: 35 CTQTLLSMSPCLNYLTGNETA--PSASCCGKLGEVVKSQPECLCVALNADTAALGLSINR 92
Query: 112 TKALQLPAACKVKTPPFSKCH 132
T+AL LP ACKV+TPP S C
Sbjct: 93 TRALGLPDACKVQTPPVSNCK 113
>Os03g0385400 Plant lipid transfer protein/Par allergen family protein
Length = 178
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 52 DCTDALLSLAGCLSYVQEGSTV-AKPDAPCCSGLKGVVKKE--VACLCQAFQGSQNFGVT 108
DCT L LA CL YV G T ++P CC +KG +K V CLC AF S+ +
Sbjct: 39 DCTAEALKLADCLDYVTPGKTAPSRPSKLCCGEVKGALKDSAAVGCLCAAFT-SKTLPLP 97
Query: 109 LNMTKALQLPAACKVKTPPFSKCHLSIP 136
+N+T+AL LPAAC FSKC P
Sbjct: 98 INITRALHLPAACGADASAFSKCLAPAP 125
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.130 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,617,462
Number of extensions: 104248
Number of successful extensions: 270
Number of sequences better than 1.0e-10: 14
Number of HSP's gapped: 260
Number of HSP's successfully gapped: 14
Length of query: 211
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 115
Effective length of database: 12,023,257
Effective search space: 1382674555
Effective search space used: 1382674555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)