Os03g0323900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase, trypsin-like serine and cysteine domain containing protein.
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Os03g0323900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase, trypsin-like serine and cysteine domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 88.51 | 0.442 | 8.32 | 0.028 | 0.0715 | -1.05 | 0.396 | 4.99 | -0.2 | 2.68 | 26.19 | 209 | -- | -- |
| 93.34 | 0.45 | 8.38 | -0.463 | 0.1 | -0.65 | -0.103 | -- | -0.311 | 3.12 | 26.19 | 129 | -- | -- |
| 89.01 | 0.439 | 8.32 | 0.01 | 0.0759 | -1.05 | -- | 4.99 | -0.207 | 2.89 | 26.3 | 221 | -- | -- |
| 93.17 | 0.45 | 8.38 | -0.509 | 0.132 | -0.614 | -- | -- | -0.32 | 4.1 | 26.04 | 130 | -- | -- |
| 89.23 | 0.44 | 8.32 | 0.017 | -- | -1.11 | -- | 4.91 | -0.203 | -- | 26.24 | 213 | -- | -- |
| 98.67 | 0.466 | 8.38 | -0.583 | 0.371 | -- | 0.0528 | -- | -0.334 | 4.24 | -- | -- | -- | -- |
| 98.67 | 0.465 | 8.38 | -0.584 | 0.372 | -- | -- | -- | -0.334 | 4.25 | -- | -- | -- | -- |
| 93.9 | 0.451 | 8.38 | -0.472 | -- | -0.711 | -- | -- | -0.301 | -- | 25.8 | 131 | -- | -- |
| 99.34 | 0.464 | 8.37 | -- | 0.0942 | -0.705 | -- | -- | -0.251 | 5.08 | 25.9 | 129 | -- | -- |
| 106.13 | 0.481 | 8.39 | -0.569 | -- | -- | -- | -- | -0.324 | -- | -- | -- | -- | -- |
| 107.65 | 0.485 | 8.37 | -- | 0.36 | -- | -- | -- | -0.269 | 4.29 | -- | -- | -- | -- |
| 99.65 | 0.465 | 8.37 | -- | -- | -0.776 | -- | -- | -0.245 | -- | 25.7 | 131 | -- | -- |
| 114.66 | 0.5 | 8.37 | -- | -- | -- | -- | -- | -0.261 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 84.94 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 13 | 5 |
| 3 | 85.04 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 4 | 85.06 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 13 | 5 |
| 6 | 85.09 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 17 | 85.24 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 18 | 85.26 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 20 | 85.26 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 22 | 85.28 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 26 | 85.33 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 16 | 3 |
| 54 | 85.59 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 103 | 86.41 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 110 | 86.49 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 134 | 86.82 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 139 | 86.84 | atmosphere | 1005.0 | 14400 | > th | dose independent | sin | 19 | NA |
| 175 | 87.16 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 177 | 87.17 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 6 | 5 |
| 188 | 87.26 | atmosphere | 1005.0 | 14400 | < th | dose independent | sin | 19 | NA |
| 214 | 87.38 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 20 | 15 |
| 233 | 87.51 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 21 | 14 |
| 256 | 87.60 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 8 | NA |
| 279 | 87.72 | atmosphere | 995.0 | 43200 | > th | dose independent | sin | 8 | NA |
| 301 | 87.81 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 307 | 87.83 | temperature | 20.0 | 270 | > th | dose independent | rect. | 17 | 15 |
| 321 | 87.87 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 21 | 12 |
| 334 | 87.91 | atmosphere | 995.0 | 43200 | < th | dose dependent | sin | 11 | NA |
| 337 | 87.92 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 1 | 8 |
| 340 | 87.92 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 3 | 5 |
| 342 | 87.93 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 344 | 87.96 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 1 | 8 |
| 354 | 87.99 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 357 | 88.01 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 20 | 7 |
| 361 | 88.01 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 2 |
| 401 | 88.14 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 408 | 88.15 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 20 | 9 |
| 412 | 88.15 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 14 |
| 426 | 88.19 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 441 | 88.22 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 7 | 11 |
| 445 | 88.23 | temperature | 25.0 | 270 | > th | dose dependent | sin | 1 | NA |
| 480 | 88.31 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 511 | 88.38 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 20 | 7 |
| 512 | 88.38 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 20 | 9 |
| 552 | 88.45 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 1 | NA |
| 560 | 88.46 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 5 | 6 |
| 569 | 88.47 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 19 |
| 633 | 88.57 | temperature | 25.0 | 720 | < th | dose independent | rect. | 6 | 5 |
| 643 | 88.57 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 1 | 17 |
| 645 | 88.58 | wind | 9.0 | 14400 | > th | dose independent | rect. | 5 | 6 |
| 658 | 88.60 | wind | 3.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 662 | 88.61 | wind | 3.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 752 | 88.72 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 10 |
| 753 | 88.73 | temperature | 25.0 | 720 | > th | dose independent | rect. | 8 | 3 |
| 795 | 88.77 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 810 | 88.79 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 828 | 88.79 | radiation | 40.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 848 | 88.80 | atmosphere | 1005.0 | 14400 | > th | dose independent | no | NA | NA |
| 909 | 88.87 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 921 | 88.88 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 10 | 1 |
| 946 | 88.92 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 23 | 4 |
| 999 | 88.99 | temperature | 20.0 | 90 | > th | dose independent | rect. | 17 | 23 |