BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0323900 Os03g0323900|AK108122
(199 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G27130.1 | chr2:11595379-11596395 FORWARD LENGTH=177 72 2e-13
AT3G43720.1 | chr3:15615549-15617099 REVERSE LENGTH=194 67 5e-12
AT2G13820.1 | chr2:5774295-5776279 REVERSE LENGTH=170 66 1e-11
AT4G14815.1 | chr4:8505122-8505760 FORWARD LENGTH=157 63 1e-10
AT3G22600.1 | chr3:8006711-8007397 REVERSE LENGTH=171 63 1e-10
AT5G64080.1 | chr5:25645475-25646638 REVERSE LENGTH=183 59 2e-09
AT4G08670.1 | chr4:5536765-5538210 REVERSE LENGTH=209 54 4e-08
AT1G03103.1 | chr1:747219-747955 FORWARD LENGTH=172 52 1e-07
AT1G36150.1 | chr1:13528257-13529470 FORWARD LENGTH=257 51 5e-07
AT5G09370.1 | chr5:2909450-2910475 REVERSE LENGTH=159 51 5e-07
AT2G48130.1 | chr2:19685263-19685977 REVERSE LENGTH=184 50 8e-07
AT2G44290.1 | chr2:18305418-18306202 REVERSE LENGTH=206 49 2e-06
>AT2G27130.1 | chr2:11595379-11596395 FORWARD LENGTH=177
Length = 176
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 50 LDCTGALLNLSSCLTYVEYRSTLTRPDKGCCGALAGVVDGEAACLCGLVGGYGA--YGVR 107
++C ++LN+S C +YV+ S +P+ CC LAG+V C+C L GG + +GV+
Sbjct: 38 VNCLVSMLNVSDCFSYVQVGSNEIKPEAACCPELAGMVQSSPECVCNLYGGGASPRFGVK 97
Query: 108 VDAVRALALPTICRVDAPPPRLC 130
+D RA L TIC V AP P LC
Sbjct: 98 LDKQRAEQLSTICGVKAPSPSLC 120
>AT3G43720.1 | chr3:15615549-15617099 REVERSE LENGTH=194
Length = 193
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 48 GELDCTGALLNLSSCLTYVEYRST--LTRPDKGCCGALAGVVDGEAACLCGLVGGYGA-- 103
G DC L+N++ CL+YV +PDK CC ALAG+V+ CLC L+ G A
Sbjct: 34 GAPDCMANLMNMTGCLSYVTVGEGGGAAKPDKTCCPALAGLVESSPQCLCYLLSGDMAAQ 93
Query: 104 YGVRVDAVRALALPTICRVDAPPPRLC 130
G+++D +AL LP +C V P P LC
Sbjct: 94 LGIKIDKAKALKLPGVCGVITPDPSLC 120
>AT2G13820.1 | chr2:5774295-5776279 REVERSE LENGTH=170
Length = 169
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 48/81 (59%)
Query: 50 LDCTGALLNLSSCLTYVEYRSTLTRPDKGCCGALAGVVDGEAACLCGLVGGYGAYGVRVD 109
+DC+ +LN++ CL++V ST+ +P+ CC L VV CLC G+ G+ +D
Sbjct: 25 VDCSSLILNMADCLSFVTSGSTVVKPEGTCCSGLKTVVRTGPECLCEAFKNSGSLGLTLD 84
Query: 110 AVRALALPTICRVDAPPPRLC 130
+A +LP++C+V APP C
Sbjct: 85 LSKAASLPSVCKVAAPPSARC 105
>AT4G14815.1 | chr4:8505122-8505760 FORWARD LENGTH=157
Length = 156
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 48 GELDCTGALLNLSSCLTYVEYRSTLTRPDKGCCGALAGVVDGEAACLCGLVGGYGAY-GV 106
+ CT L++++ CL+++ ++L P + CC LA VV + CLC ++ G G+ G+
Sbjct: 22 AQSSCTNVLISMAPCLSFITQNTSL--PSQQCCNQLAHVVRYSSECLCQVLDGGGSQLGI 79
Query: 107 RVDAVRALALPTICRVDAPPPRLC 130
V+ +ALALP C V+ PP C
Sbjct: 80 NVNETQALALPKACHVETPPASRC 103
>AT3G22600.1 | chr3:8006711-8007397 REVERSE LENGTH=171
Length = 170
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 49 ELDCTGALLNLSSCLTYVEYRSTLTRPDKGCCGALAGVVDGEAACLCGLVGGYGAY-GVR 107
+ CT AL+++S CL Y+ ST P++ CC L+ VV CLC ++ G G+ G+
Sbjct: 25 QSSCTNALISMSPCLNYITGNST--SPNQQCCNQLSRVVQSSPDCLCQVLNGGGSQLGIN 82
Query: 108 VDAVRALALPTICRVDAPPPRLC 130
V+ +AL LP C V PP C
Sbjct: 83 VNQTQALGLPRACNVQTPPVSRC 105
>AT5G64080.1 | chr5:25645475-25646638 REVERSE LENGTH=183
Length = 182
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 49 ELDCTGALLNLSSCLTYVEYRSTLTRPDKGCCGALAGVVDGEAACLCGLVGGYGAYGVRV 108
+DC+ +LN++ CL++V T+ +P+ CC L V+ ++ CLC + GV +
Sbjct: 40 SVDCSTLILNMADCLSFVSSGGTVAKPEGTCCSGLKTVLKADSQCLCEAFKSSASLGVTL 99
Query: 109 DAVRALALPTICRVDAPPPRLC 130
+ +A LP C++ AP C
Sbjct: 100 NITKASTLPAACKLHAPSIATC 121
>AT4G08670.1 | chr4:5536765-5538210 REVERSE LENGTH=209
Length = 208
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%)
Query: 51 DCTGALLNLSSCLTYVEYRSTLTRPDKGCCGALAGVVDGEAACLCGLVGGYGAYGVRVDA 110
DC+ + ++ CL Y+ S T+P+K CC + V+ C+C + G G+ +++
Sbjct: 47 DCSTVIYSMMDCLGYLGVGSNETKPEKSCCTGIETVLQYNPQCICAGLVSAGEMGIELNS 106
Query: 111 VRALALPTICRVDAPPPR 128
RALA P C++ PP
Sbjct: 107 TRALATPKACKLSIAPPH 124
>AT1G03103.1 | chr1:747219-747955 FORWARD LENGTH=172
Length = 171
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 52 CTGALLNLSSCLTYVEYRSTLTRPDKGCCGALAGVVDGEAACLCGLVGGYGA--YGVRVD 109
C L +LS CL Y+ S+ P CC + VV CLC +V + YG + +
Sbjct: 25 CRDTLTSLSPCLYYLNGGSS--SPSWSCCRQFSTVVQSSPECLCSVVNSNESSFYGFKFN 82
Query: 110 AVRALALPTICRVDAPPPRLC 130
AL LPT C V P P LC
Sbjct: 83 RTLALNLPTACNVQTPSPSLC 103
>AT1G36150.1 | chr1:13528257-13529470 FORWARD LENGTH=257
Length = 256
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%)
Query: 48 GELDCTGALLNLSSCLTYVEYRSTLTRPDKGCCGALAGVVDGEAACLCGLVGGYGAYGVR 107
DC+ + ++ CL+++ ST P K CC + V++ CLC + G
Sbjct: 41 NSTDCSSVIYSMVDCLSFLTVGSTDPSPTKTCCVGVKTVLNYSPKCLCSALESSREMGFV 100
Query: 108 VDAVRALALPTICRV 122
+D +ALA+P IC V
Sbjct: 101 LDDTKALAMPKICNV 115
>AT5G09370.1 | chr5:2909450-2910475 REVERSE LENGTH=159
Length = 158
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 48 GELDCTGALLNLSSCLTYVEYRSTLTRPDKGCCGALAGVVDGEAACLC-GLVGGYGAYGV 106
G DC ++ L CL ++ T P CC +L ++D + CLC GL G+
Sbjct: 24 GASDCDTLVITLFPCLPFISIGGTADTPTASCCSSLKNILDTKPICLCEGL--KKAPLGI 81
Query: 107 RVDAVRALALPTICRVDAPPPRLC 130
+++ ++ LP C+++APP C
Sbjct: 82 KLNVTKSATLPVACKLNAPPVSAC 105
>AT2G48130.1 | chr2:19685263-19685977 REVERSE LENGTH=184
Length = 183
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 51 DCTGALLNLSSCLTYVEYRSTLTRPDKGCCGALAGVVDGEAACLCGLVGG-YGAYGVRVD 109
C L LS CL+Y+ ST P + CC L V+ C+C V G+ ++
Sbjct: 29 SCVSTLTTLSPCLSYITGNST--TPSQPCCSRLDSVIKSSPQCICSAVNSPIPNIGLNIN 86
Query: 110 AVRALALPTICRVDAPP 126
+AL LP C + PP
Sbjct: 87 RTQALQLPNACNIQTPP 103
>AT2G44290.1 | chr2:18305418-18306202 REVERSE LENGTH=206
Length = 205
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 51 DCTGALLNLSSCLTYVEYRSTLTRPDKGCCGALAGVVDGEAACLCGLVGGYG--AYGVRV 108
+CT L+ +++CL YV+ ++ PD CC L V++ + CLC ++ G++V
Sbjct: 35 ECTAQLVGMATCLPYVQGKAKSPTPD--CCSGLKQVINSDMKCLCMIIQERNDPDLGLQV 92
Query: 109 DAVRALALPTICRVDA 124
+ ALALP++C A
Sbjct: 93 NVSLALALPSVCHATA 108
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.139 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,473,016
Number of extensions: 75225
Number of successful extensions: 264
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 14
Length of query: 199
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 106
Effective length of database: 8,556,881
Effective search space: 907029386
Effective search space used: 907029386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 109 (46.6 bits)