BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0174900 Os03g0174900|Y10905
(239 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0174900 Similar to Similarities with DEHA0F28138g Deba... 461 e-130
Os07g0608200 Similar to CCAAT-binding transcription factor ... 191 5e-49
Os03g0411100 Similar to Nuclear Y/CCAAT-box binding factor ... 185 2e-47
Os03g0696300 CCAAT-binding transcription factor, subunit B ... 145 3e-35
Os12g0613000 Similar to NF-YA subunit 142 2e-34
Os08g0196700 Similar to Nuclear Y/CCAAT-box binding factor ... 124 7e-29
Os12g0618600 Similar to Transcriptional activator HAP2 115 4e-26
Os03g0647600 Similar to Nf-Y-A subunit 83 2e-16
Os07g0158500 CCAAT-binding transcription factor, subunit B ... 76 2e-14
>Os03g0174900 Similar to Similarities with DEHA0F28138g Debaryomyces hansenii IPF
5920.1
Length = 239
Score = 461 bits (1185), Expect = e-130, Method: Compositional matrix adjust.
Identities = 225/239 (94%), Positives = 225/239 (94%)
Query: 1 MLPPHLTENGTVMIQFGHKMPDYESSATQSTSGSPREVSGMSEGSLNEQNDQSGNLDGYT 60
MLPPHLTENGTVMIQFGHKMPDYESSATQSTSGSPREVSGMSEGSLNEQNDQSGNLDGYT
Sbjct: 1 MLPPHLTENGTVMIQFGHKMPDYESSATQSTSGSPREVSGMSEGSLNEQNDQSGNLDGYT 60
Query: 61 KSDEGKMMSALSLGKSETVYAHSEPDRSQPFGISYPYADSFYGGAVATYGTHAIMHPQIV 120
KSDEGKMMSALSLGKSETVYAHSEPDRSQPFGISYPYADSFYGGAVATYGTHAIMHPQIV
Sbjct: 61 KSDEGKMMSALSLGKSETVYAHSEPDRSQPFGISYPYADSFYGGAVATYGTHAIMHPQIV 120
Query: 121 GVMSSSRVPLPIEPATEEPIYVNAKQYHAILRRRQLRAKLEAENKLVKNRKPYLHESRHQ 180
GVMSSSRVPLPIEPATEEPIYVNAKQYHAILRRRQLRAKLEAENKLVKNRKPYLHESRHQ
Sbjct: 121 GVMSSSRVPLPIEPATEEPIYVNAKQYHAILRRRQLRAKLEAENKLVKNRKPYLHESRHQ 180
Query: 181 HAMKRARGTGGRFLNTKQQPEASDGGTPRLVSANGVVFXXXXXXXXXXXXXXRRAKEGA 239
HAMKRARGTGGRFLNTKQQPEASDGGTPRLVSANGVVF RRAKEGA
Sbjct: 181 HAMKRARGTGGRFLNTKQQPEASDGGTPRLVSANGVVFSKHEHSLSSSDLHHRRAKEGA 239
>Os07g0608200 Similar to CCAAT-binding transcription factor subunit B (CBF-B)
(NF-Y protein chain A) (NF-YA) (CAAT-box DNA binding
protein subunit A). Splice isoform Short
Length = 304
Score = 191 bits (484), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 108/187 (57%), Positives = 134/187 (71%), Gaps = 8/187 (4%)
Query: 13 MIQFGHKMPDYESSATQSTSGSPREVSGMSEGSLNEQND--QSGNLDGYTKSDEGKMMSA 70
M Q GHKM D +S ++ S S +E S M++ S NE++ QS N DG+ D+ K S
Sbjct: 28 MKQLGHKMYDQDSPSSDSGQ-SHQEESAMNDSSPNERHTSTQSDNDDGHQMPDQDKTKSV 86
Query: 71 LSLGKSETVYAHSEPDRSQPFGISYPY-ADSFYGGAVATYGTHAIMHPQIVGVMSSSRVP 129
SLG + + + SQ F PY AD++YGG + Y +HAI+HPQ G ++SRVP
Sbjct: 87 SSLGNPGALPP--KLNYSQSFAC-IPYTADAYYGGVLTGYSSHAIVHPQQNGT-ANSRVP 142
Query: 130 LPIEPATEEPIYVNAKQYHAILRRRQLRAKLEAENKLVKNRKPYLHESRHQHAMKRARGT 189
LP+EPA EEPI+VNAKQYHAILRRRQ+RAKLEA+NKLVK RKPYLHESRH+HAMKRARG+
Sbjct: 143 LPVEPAAEEPIFVNAKQYHAILRRRQIRAKLEAQNKLVKGRKPYLHESRHRHAMKRARGS 202
Query: 190 GGRFLNT 196
GGRFLNT
Sbjct: 203 GGRFLNT 209
>Os03g0411100 Similar to Nuclear Y/CCAAT-box binding factor A subunit NF-YA
Length = 317
Score = 185 bits (470), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 107/210 (50%), Positives = 133/210 (63%), Gaps = 26/210 (12%)
Query: 6 LTENGTVMIQFGHKMPDYESSATQSTSGSPREVSGMSEGSLNEQ---------------N 50
L N M Q + D +SS T+S S +E S +S+ SLN Q N
Sbjct: 24 LARNNYPMKQLVQRNSDGDSSPTKSGE-SHQEASAVSDSSLNGQHTSPQSVFVPSDINNN 82
Query: 51 DQSGNLDGYTKSDEGKMMSALSLGKSETVYAHSEPDRSQPFG-ISYPY-ADSFYGGAVAT 108
D G D TKS LSLG +E + S+ D +QPF +SYPY D +YGG +
Sbjct: 83 DSCGERDHGTKS-------VLSLGNTEAAFPPSKFDYNQPFACVSYPYGTDPYYGGVLTG 135
Query: 109 YGTHAIMHPQIVGVMSSSRVPLPIEPATEEPIYVNAKQYHAILRRRQLRAKLEAENKLVK 168
Y +HA +HPQI G ++SR+PLP++P+ EEPI+VNAKQY+AILRRRQ RAKLEA+NK VK
Sbjct: 136 YTSHAFVHPQITGA-ANSRMPLPVDPSVEEPIFVNAKQYNAILRRRQTRAKLEAQNKAVK 194
Query: 169 NRKPYLHESRHQHAMKRARGTGGRFLNTKQ 198
RKPYLHESRH HAMKRARG+GGRFL K+
Sbjct: 195 GRKPYLHESRHHHAMKRARGSGGRFLTKKE 224
>Os03g0696300 CCAAT-binding transcription factor, subunit B family protein
Length = 258
Score = 145 bits (365), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 102/146 (69%), Gaps = 6/146 (4%)
Query: 57 DGYTKSDEGKMMSALSLGKSETVYAHSEPDRSQPFG-ISYPYADSFYGGAVATYGTHAI- 114
DG T ++ S ++ S+ + S+ + +QP +Y Y DS+Y G V YG A+
Sbjct: 80 DGSTDQEKHHATSQMTALASDYLTPFSQLELNQPIASAAYQYPDSYYMGMVGPYGPQAMS 139
Query: 115 --MHPQIVGVMSSSRVPLPIEPATEEPIYVNAKQYHAILRRRQLRAKLEAENKLVKNRKP 172
H Q+ G ++ SR+PLP+E +EEP+YVNAKQYH ILRRRQ RAK E E K+VK+RKP
Sbjct: 140 AQTHFQLPG-LTHSRMPLPLE-ISEEPVYVNAKQYHGILRRRQSRAKAELEKKVVKSRKP 197
Query: 173 YLHESRHQHAMKRARGTGGRFLNTKQ 198
YLHESRHQHAM+RARGTGGRFLNTK+
Sbjct: 198 YLHESRHQHAMRRARGTGGRFLNTKK 223
>Os12g0613000 Similar to NF-YA subunit
Length = 217
Score = 142 bits (358), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/121 (61%), Positives = 88/121 (72%), Gaps = 5/121 (4%)
Query: 78 TVYAHSEPDRSQPFG-ISYPYADSFYGGAVATYGTHAIMHPQIVGVMSSSRVPLPIEPAT 136
T YAH D + G I+Y D +YG A YG +MHP +VG M + +PLP + A
Sbjct: 52 TPYAHH--DMAHAMGQIAYANIDPYYGSLYAAYGGQPMMHPPLVG-MHPAGLPLPTD-AI 107
Query: 137 EEPIYVNAKQYHAILRRRQLRAKLEAENKLVKNRKPYLHESRHQHAMKRARGTGGRFLNT 196
EEP+YVNAKQY+AILRRRQ RAK E+E KLVK RKPYLHESRHQHA+KRARG GGRFLN+
Sbjct: 108 EEPVYVNAKQYNAILRRRQSRAKAESEKKLVKGRKPYLHESRHQHALKRARGAGGRFLNS 167
Query: 197 K 197
K
Sbjct: 168 K 168
>Os08g0196700 Similar to Nuclear Y/CCAAT-box binding factor A subunit NF-YA
Length = 193
Score = 124 bits (311), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 67/125 (53%), Positives = 82/125 (65%), Gaps = 4/125 (3%)
Query: 73 LGKSETVYAHSEPDRSQPFGISYPYADSFYGGAVATYGTHAIMHPQIVGVMSSSRVPLPI 132
LG S Y S + P +SYPY ++YGG Y +++ ++ M VPL +
Sbjct: 21 LGTSSAEYVASLGPATAP--VSYPYISTYYGGTYGAYSGQPLVNAALMA-MPPHSVPL-V 76
Query: 133 EPATEEPIYVNAKQYHAILRRRQLRAKLEAENKLVKNRKPYLHESRHQHAMKRARGTGGR 192
A EPIYVNA+QYH ILRRRQ RAK E+ENK K RKPYLHESRH HA+KRARG+GGR
Sbjct: 77 TDAVVEPIYVNARQYHGILRRRQSRAKAESENKANKIRKPYLHESRHLHALKRARGSGGR 136
Query: 193 FLNTK 197
FLN+K
Sbjct: 137 FLNSK 141
>Os12g0618600 Similar to Transcriptional activator HAP2
Length = 311
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/118 (52%), Positives = 74/118 (62%), Gaps = 10/118 (8%)
Query: 94 SYPYADSFYGGAVATYGTHAIMHPQIVGVMSSSRVPLPIEPATEEPIYVNAKQYHAILRR 153
+YPYAD YG ++ P V S R+ +P + PIYVNAKQ AI+RR
Sbjct: 117 NYPYADQHYG----------LLSPYGVRPTPSGRILIPPNMPADAPIYVNAKQCSAIIRR 166
Query: 154 RQLRAKLEAENKLVKNRKPYLHESRHQHAMKRARGTGGRFLNTKQQPEASDGGTPRLV 211
R RAK E EN+LVK RKPYLHESRH HAM+RARG+GGRFLNTK++ G R V
Sbjct: 167 RHARAKAERENRLVKARKPYLHESRHLHAMRRARGSGGRFLNTKKETNGKTTGGGRKV 224
>Os03g0647600 Similar to Nf-Y-A subunit
Length = 354
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 75/113 (66%), Gaps = 10/113 (8%)
Query: 94 SYPYADSFYGGAVATYGTHAIMHPQIVGVMSSSRVPLPIEPATEEPIYVNAKQYHAILRR 153
+YP D YG +M + MS R+ LP+ + PIYVNAKQY ILRR
Sbjct: 140 NYPCIDQCYG----------LMTTYAMKSMSGGRMLLPLNAPADAPIYVNAKQYEGILRR 189
Query: 154 RQLRAKLEAENKLVKNRKPYLHESRHQHAMKRARGTGGRFLNTKQQPEASDGG 206
R+ RAK + EN+LVK RKPYLHESRH+HAM+RARG+GGRFLNTK++ A+ G
Sbjct: 190 RRARAKAQRENRLVKGRKPYLHESRHRHAMRRARGSGGRFLNTKKEATAAGCG 242
>Os07g0158500 CCAAT-binding transcription factor, subunit B family protein
Length = 264
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 60/73 (82%), Gaps = 1/73 (1%)
Query: 127 RVPLPIEPATEE-PIYVNAKQYHAILRRRQLRAKLEAENKLVKNRKPYLHESRHQHAMKR 185
R+ LP AT+ PIYVNAKQ++ I+RRR RAK E E+++ ++RKPYLHESRH+HAM+R
Sbjct: 91 RMLLPPAIATDVGPIYVNAKQFNGIIRRRLARAKAEREHRVSRSRKPYLHESRHRHAMRR 150
Query: 186 ARGTGGRFLNTKQ 198
ARG+GGRFLNTK
Sbjct: 151 ARGSGGRFLNTKN 163
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.128 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,270,704
Number of extensions: 340709
Number of successful extensions: 799
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 789
Number of HSP's successfully gapped: 9
Length of query: 239
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 141
Effective length of database: 11,918,829
Effective search space: 1680554889
Effective search space used: 1680554889
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 154 (63.9 bits)