BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0152400 Os03g0152400|J075140K23
(92 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0152400 Similar to 4-coumarate--CoA ligase 1 (EC 6.2.1... 187 1e-48
Os08g0448000 Similar to 4-coumarate--CoA ligase 1 (EC 6.2.1... 78 2e-15
Os04g0310700 AMP-dependent synthetase and ligase domain con... 75 1e-14
Os03g0132000 Similar to 4-coumarate-CoA ligase-like protein 74 2e-14
Os08g0245200 Similar to 4-coumarate--CoA ligase 1 (EC 6.2.1... 74 2e-14
Os06g0656500 Similar to 4-coumarate--CoA ligase 1 (EC 6.2.1... 73 5e-14
Os02g0177600 Similar to 4-coumarate--CoA ligase 1 (EC 6.2.1... 72 9e-14
Os02g0697400 Similar to 4-coumarate--CoA ligase 1 (EC 6.2.1... 71 2e-13
Os10g0578950 AMP-dependent synthetase and ligase domain con... 64 2e-11
>Os03g0152400 Similar to 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1)
(At4CL1) (4-coumaroyl- CoA synthase 1)
Length = 92
Score = 187 bits (476), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 92/92 (100%), Positives = 92/92 (100%)
Query: 1 TSLFFTDNRSQYILCILSCNNNRTKQLLTYLNVAFVGYFNNVQATEFTIKQGWLHTGDLG 60
TSLFFTDNRSQYILCILSCNNNRTKQLLTYLNVAFVGYFNNVQATEFTIKQGWLHTGDLG
Sbjct: 1 TSLFFTDNRSQYILCILSCNNNRTKQLLTYLNVAFVGYFNNVQATEFTIKQGWLHTGDLG 60
Query: 61 YFDGGGQLFVVDRLKELIKYKGFQVKKLILFP 92
YFDGGGQLFVVDRLKELIKYKGFQVKKLILFP
Sbjct: 61 YFDGGGQLFVVDRLKELIKYKGFQVKKLILFP 92
>Os08g0448000 Similar to 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1)
(4-coumaroyl-CoA synthase 1) (Clone 4CL14) (Fragment)
Length = 539
Score = 77.8 bits (190), Expect = 2e-15, Method: Composition-based stats.
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 8/64 (12%)
Query: 23 RTKQLLTYLNVAFVGYFNNVQATEFTI-KQGWLHTGDLGYFDGGGQLFVVDRLKELIKYK 81
R KQ++ GY NN +ATE TI K GWLHTGD+G+ D ++F+VDRLKELIKYK
Sbjct: 387 RGKQIMK-------GYLNNPEATEKTIDKDGWLHTGDIGFVDDDDEIFIVDRLKELIKYK 439
Query: 82 GFQV 85
GFQV
Sbjct: 440 GFQV 443
>Os04g0310700 AMP-dependent synthetase and ligase domain containing protein
Length = 338
Score = 75.1 bits (183), Expect = 1e-14, Method: Composition-based stats.
Identities = 32/50 (64%), Positives = 40/50 (80%), Gaps = 1/50 (2%)
Query: 37 GYFNNVQATEFTIK-QGWLHTGDLGYFDGGGQLFVVDRLKELIKYKGFQV 85
GY+ + TE T+ +GWLHTGD+GY DG G +F+VDR+KELIKYKGFQV
Sbjct: 192 GYYKRKEETERTVDGKGWLHTGDVGYIDGDGDVFIVDRIKELIKYKGFQV 241
>Os03g0132000 Similar to 4-coumarate-CoA ligase-like protein
Length = 552
Score = 74.3 bits (181), Expect = 2e-14, Method: Composition-based stats.
Identities = 38/65 (58%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 22 NRTKQLLTYLNVAFVGYFNNVQATEFTIK-QGWLHTGDLGYFDGGGQLFVVDRLKELIKY 80
NRT +L GYF N +AT+ T+ GWL TGDL Y D G LFVVDRLKELIKY
Sbjct: 395 NRTGELWIRGPYVMKGYFKNAEATQSTLTPDGWLKTGDLCYIDEDGYLFVVDRLKELIKY 454
Query: 81 KGFQV 85
KG+QV
Sbjct: 455 KGYQV 459
>Os08g0245200 Similar to 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1)
(4-coumaroyl-CoA synthase 1)
Length = 564
Score = 74.3 bits (181), Expect = 2e-14, Method: Composition-based stats.
Identities = 32/50 (64%), Positives = 41/50 (82%), Gaps = 1/50 (2%)
Query: 37 GYFNNVQATEFTIK-QGWLHTGDLGYFDGGGQLFVVDRLKELIKYKGFQV 85
GY NN +AT+ TI +GWLHTGD+GY D ++F+VDRLKE+IKY+GFQV
Sbjct: 418 GYLNNPEATKNTIDAEGWLHTGDIGYVDDDDEIFIVDRLKEIIKYRGFQV 467
>Os06g0656500 Similar to 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1)
(4-coumaroyl-CoA synthase 1) (Clone 4CL14) (Fragment)
Length = 559
Score = 72.8 bits (177), Expect = 5e-14, Method: Composition-based stats.
Identities = 32/50 (64%), Positives = 41/50 (82%), Gaps = 1/50 (2%)
Query: 37 GYFNNVQATEFTI-KQGWLHTGDLGYFDGGGQLFVVDRLKELIKYKGFQV 85
GY N+ ++T+ TI K GWLHTGD+GY D ++F+VDRLKE+IKYKGFQV
Sbjct: 407 GYLNDPESTKNTIDKGGWLHTGDIGYVDDDDEIFIVDRLKEIIKYKGFQV 456
>Os02g0177600 Similar to 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1)
(4-coumaroyl-CoA synthase 1) (Clone 4CL14) (Fragment)
Length = 561
Score = 72.0 bits (175), Expect = 9e-14, Method: Composition-based stats.
Identities = 31/50 (62%), Positives = 41/50 (82%), Gaps = 1/50 (2%)
Query: 37 GYFNNVQATEFTIKQ-GWLHTGDLGYFDGGGQLFVVDRLKELIKYKGFQV 85
GY N+ +AT+ TI + GWLHTGD+G+ D ++F+VDRLKE+IKYKGFQV
Sbjct: 404 GYLNDPEATKNTIDEDGWLHTGDIGFVDDDDEIFIVDRLKEIIKYKGFQV 453
>Os02g0697400 Similar to 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1)
(4-coumaroyl-CoA synthase 1) (Clone 4CL14) (Fragment)
Length = 569
Score = 70.9 bits (172), Expect = 2e-13, Method: Composition-based stats.
Identities = 31/50 (62%), Positives = 40/50 (80%), Gaps = 1/50 (2%)
Query: 37 GYFNNVQATEFTIK-QGWLHTGDLGYFDGGGQLFVVDRLKELIKYKGFQV 85
GY N+ +AT TI +GWLHTGD+GY D ++F+VDR+KELIK+KGFQV
Sbjct: 428 GYLNDPEATAATIDVEGWLHTGDIGYVDDDDEVFIVDRVKELIKFKGFQV 477
>Os10g0578950 AMP-dependent synthetase and ligase domain containing protein
Length = 564
Score = 64.3 bits (155), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/49 (59%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 37 GYFNNVQATEFTIKQGWLHTGDLGYFDGGGQLFVVDRLKELIKYKGFQV 85
GY N+ FT K GWL TGD+ YFD G LF+V RLK+ IKYKGFQ+
Sbjct: 418 GYLND-DDDAFTRKDGWLRTGDIAYFDSDGYLFIVGRLKDTIKYKGFQI 465
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.327 0.145 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,015,372
Number of extensions: 101950
Number of successful extensions: 255
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 9
Length of query: 92
Length of database: 17,035,801
Length adjustment: 61
Effective length of query: 31
Effective length of database: 13,850,747
Effective search space: 429373157
Effective search space used: 429373157
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 149 (62.0 bits)