Os03g0132000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 4-coumarate-CoA ligase-like protein.
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Os03g0132000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 4-coumarate-CoA ligase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.04 | 0.282 | 11.3 | 0.687 | 1.32 | -1.22 | 0.385 | 0.335 | 0.393 | 7.99 | 0.98 | 274 | -- | -- |
| 36.54 | 0.282 | 11.3 | 0.683 | 1.31 | -1.23 | 0.575 | -- | 0.392 | 8 | 0.818 | 283 | -- | -- |
| 36.38 | 0.281 | 11.3 | 0.706 | 1.29 | -1.22 | -- | 0.41 | 0.396 | 7.95 | 0.8109 | 287 | -- | -- |
| 37.21 | 0.284 | 11.3 | 0.697 | 1.28 | -1.26 | -- | -- | 0.396 | 8.13 | 0.8347 | 290 | -- | -- |
| 44.36 | 0.31 | 11.3 | 0.875 | -- | -1.99 | -- | 0.877 | 0.43 | -- | 1.343 | 602 | -- | -- |
| 45.19 | 0.315 | 11.3 | 0.606 | 1.96 | -- | 0.145 | -- | 0.351 | 4.85 | -- | -- | -- | -- |
| 45.25 | 0.315 | 11.3 | 0.606 | 1.96 | -- | -- | -- | 0.35 | 4.85 | -- | -- | -- | -- |
| 41.27 | 0.299 | 11.4 | 0.71 | -- | -2.12 | -- | -- | 0.463 | -- | 1.43 | 607 | -- | -- |
| 49.98 | 0.329 | 11.4 | -- | 1.26 | -1.22 | -- | -- | 0.312 | 7.95 | 0.97 | 302 | -- | -- |
| 247.39 | 0.735 | 11.4 | 0.678 | -- | -- | -- | -- | 0.401 | -- | -- | -- | -- | -- |
| 54.92 | 0.347 | 11.4 | -- | 1.97 | -- | -- | -- | 0.283 | 4.84 | -- | -- | -- | -- |
| 54.55 | 0.344 | 11.4 | -- | -- | -2.12 | -- | -- | 0.374 | -- | 1.433 | 607 | -- | -- |
| 259.53 | 0.752 | 11.4 | -- | -- | -- | -- | -- | 0.326 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.70 | radiation | 1 | 270 | < th | dose independent | rect. | 3 | 23 |
| 2 | 34.72 | temperature | 25 | 270 | > th | dose dependent | rect. | 13 | 21 |
| 5 | 35.06 | radiation | 1 | 270 | > th | dose independent | sin | 22 | NA |
| 6 | 35.14 | radiation | 1 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 8 | 35.19 | radiation | 1 | 270 | > th | dose independent | rect. | 8 | 23 |
| 9 | 35.19 | temperature | 25 | 10 | > th | dose dependent | rect. | 16 | 10 |
| 14 | 35.22 | radiation | 1 | 270 | < th | dose dependent | sin | 22 | NA |
| 15 | 35.24 | radiation | 1 | 270 | < th | dose independent | sin | 22 | NA |
| 19 | 35.29 | temperature | 25 | 270 | > th | dose dependent | rect. | 13 | 5 |
| 26 | 35.34 | temperature | 25 | 90 | > th | dose dependent | sin | 15 | NA |
| 30 | 35.36 | temperature | 25 | 270 | > th | dose dependent | rect. | 13 | 12 |
| 36 | 35.41 | temperature | 25 | 90 | > th | dose dependent | rect. | 16 | 3 |
| 54 | 35.53 | temperature | 25 | 10 | > th | dose dependent | rect. | 16 | 5 |
| 96 | 35.82 | humidity | 50 | 270 | > th | dose dependent | rect. | 10 | 12 |
| 101 | 35.88 | radiation | 1 | 270 | > th | dose independent | rect. | 6 | 13 |
| 114 | 35.93 | radiation | 1 | 270 | < th | dose independent | rect. | 7 | 23 |
| 127 | 36.03 | radiation | 1 | 270 | < th | dose independent | rect. | 11 | 23 |
| 128 | 36.04 | radiation | 1 | 270 | > th | dose independent | no | NA | NA |
| 129 | 36.04 | radiation | 1 | 270 | < th | dose independent | no | NA | NA |
| 193 | 36.08 | humidity | 80 | 90 | < th | dose dependent | sin | 16 | NA |
| 223 | 36.18 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 12 |
| 227 | 36.20 | humidity | 80 | 270 | < th | dose dependent | rect. | 13 | 22 |
| 229 | 36.22 | temperature | 25 | 10 | < th | dose independent | sin | 18 | NA |
| 238 | 36.23 | temperature | 25 | 270 | < th | dose independent | rect. | 10 | 11 |
| 241 | 36.26 | temperature | 25 | 10 | < th | dose independent | rect. | 10 | 14 |
| 246 | 36.27 | radiation | 1 | 270 | < th | dose independent | rect. | 15 | 23 |
| 261 | 36.28 | humidity | 80 | 270 | < th | dose dependent | sin | 19 | NA |
| 269 | 36.32 | temperature | 25 | 10 | > th | dose independent | sin | 19 | NA |
| 282 | 36.38 | humidity | 50 | 90 | > th | dose dependent | sin | 18 | NA |
| 308 | 36.48 | humidity | 80 | 270 | < th | dose dependent | rect. | 13 | 5 |
| 315 | 36.52 | humidity | 80 | 270 | < th | dose dependent | rect. | 11 | 8 |
| 321 | 36.55 | humidity | 70 | 90 | < th | dose dependent | sin | 11 | NA |
| 328 | 36.57 | radiation | 10 | 270 | > th | dose independent | sin | 13 | NA |
| 331 | 36.57 | humidity | 80 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 336 | 36.59 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 11 |
| 354 | 36.66 | humidity | 50 | 10 | > th | dose dependent | sin | 17 | NA |
| 355 | 36.66 | humidity | 50 | 270 | > th | dose dependent | sin | 20 | NA |
| 358 | 36.67 | radiation | 40 | 270 | < th | dose dependent | sin | 13 | NA |
| 365 | 36.69 | humidity | 80 | 90 | < th | dose dependent | rect. | 16 | 3 |
| 377 | 36.72 | radiation | 1 | 270 | < th | dose dependent | rect. | 11 | 23 |
| 385 | 36.74 | radiation | 1 | 270 | < th | dose dependent | no | NA | NA |
| 387 | 36.74 | radiation | 1 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 389 | 36.75 | humidity | 70 | 90 | > th | dose independent | rect. | 11 | 13 |
| 404 | 36.78 | humidity | 50 | 10 | > th | dose dependent | rect. | 11 | 13 |
| 418 | 36.81 | radiation | 20 | 270 | < th | dose independent | sin | 13 | NA |
| 420 | 36.81 | humidity | 90 | 270 | < th | dose dependent | rect. | 8 | 11 |
| 424 | 36.81 | humidity | 80 | 270 | < th | dose dependent | rect. | 11 | 16 |
| 433 | 36.82 | temperature | 15 | 30 | > th | dose dependent | rect. | 24 | 19 |
| 454 | 36.84 | humidity | 80 | 270 | < th | dose dependent | rect. | 13 | 14 |
| 492 | 36.88 | temperature | 25 | 270 | > th | dose dependent | rect. | 21 | 22 |
| 493 | 36.89 | humidity | 70 | 30 | < th | dose independent | rect. | 16 | 3 |
| 527 | 36.91 | humidity | 80 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 530 | 36.92 | humidity | 70 | 90 | > th | dose independent | sin | 15 | NA |
| 533 | 36.92 | humidity | 80 | 90 | < th | dose dependent | rect. | 15 | 13 |
| 551 | 36.93 | humidity | 80 | 90 | < th | dose dependent | rect. | 15 | 6 |
| 558 | 36.94 | temperature | 25 | 30 | > th | dose independent | rect. | 16 | 3 |
| 575 | 36.95 | radiation | 1 | 270 | < th | dose dependent | rect. | 7 | 14 |
| 583 | 36.96 | humidity | 80 | 90 | < th | dose dependent | rect. | 15 | 10 |
| 585 | 36.96 | humidity | 90 | 270 | < th | dose dependent | rect. | 24 | 19 |
| 586 | 36.96 | radiation | 1 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 588 | 36.97 | radiation | 1 | 270 | < th | dose independent | rect. | 7 | 14 |
| 597 | 36.97 | radiation | 1 | 270 | < th | dose dependent | rect. | 9 | 12 |
| 603 | 36.97 | humidity | 90 | 270 | < th | dose dependent | rect. | 2 | 17 |
| 605 | 36.98 | humidity | 60 | 90 | > th | dose independent | sin | 11 | NA |
| 607 | 36.98 | temperature | 10 | 270 | > th | dose dependent | sin | 20 | NA |
| 618 | 36.98 | temperature | 25 | 270 | > th | dose dependent | rect. | 8 | 17 |
| 771 | 37.09 | temperature | 10 | 90 | > th | dose dependent | sin | 18 | NA |
| 777 | 37.10 | wind | 7 | 270 | < th | dose independent | rect. | 13 | 14 |
| 790 | 37.11 | radiation | 1 | 270 | > th | dose dependent | sin | 13 | NA |
| 791 | 37.11 | radiation | 1 | 90 | < th | dose dependent | sin | 17 | NA |
| 874 | 37.14 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 964 | 37.20 | temperature | 10 | 270 | > th | dose dependent | rect. | 13 | 13 |
| 988 | 37.22 | radiation | 10 | 270 | > th | dose independent | rect. | 13 | 20 |