Os03g0152400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1) (At4CL1) (4-coumaroyl- CoA synthase 1).
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Os03g0152400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1) (At4CL1) (4-coumaroyl- CoA synthase 1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.99 | 0.329 | 12.1 | 0.608 | 0.769 | 0.539 | 0.197 | -0.0565 | 0.158 | 6.87 | 0.95 | 4330 | -- | -- |
| 49 | 0.326 | 12.1 | 0.605 | 0.769 | 0.545 | 0.196 | -- | 0.154 | 6.86 | 0.8821 | 4329 | -- | -- |
| 49.09 | 0.326 | 12.1 | 0.611 | 0.77 | 0.539 | -- | -0.0629 | 0.158 | 6.87 | 0.9455 | 4334 | -- | -- |
| 49.09 | 0.326 | 12.1 | 0.609 | 0.77 | 0.552 | -- | -- | 0.156 | 6.85 | 0.88 | 4329 | -- | -- |
| 51.58 | 0.334 | 12.1 | 0.634 | -- | 1.41 | -- | 0.25 | 0.202 | -- | 1.34 | 3701 | -- | -- |
| 55.14 | 0.348 | 12.1 | 0.411 | 0.764 | -- | 0.19 | -- | 0.0476 | 6.87 | -- | -- | -- | -- |
| 55.23 | 0.348 | 12.1 | 0.414 | 0.765 | -- | -- | -- | 0.0471 | 6.86 | -- | -- | -- | -- |
| 51.73 | 0.335 | 12.1 | 0.645 | -- | 1.38 | -- | -- | 0.202 | -- | 1.42 | 3699 | -- | -- |
| 57.54 | 0.353 | 12.1 | -- | 0.706 | 0.349 | -- | -- | 0.0962 | 6.61 | 2.829 | 9804 | -- | -- |
| 85.91 | 0.433 | 12.1 | 0.43 | -- | -- | -- | -- | 0.0617 | -- | -- | -- | -- | -- |
| 59.75 | 0.362 | 12.1 | -- | 0.77 | -- | -- | -- | 0.000968 | 6.82 | -- | -- | -- | -- |
| 61.5 | 0.365 | 12.1 | -- | -- | 1.24 | -- | -- | 0.143 | -- | 2.361 | 3696 | -- | -- |
| 90.8 | 0.445 | 12.1 | -- | -- | -- | -- | -- | 0.0139 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.55 | temperature | 25.0 | 10 | > th | dose independent | rect. | 23 | 1 |
| 8 | 47.17 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 21 | 1 |
| 9 | 47.17 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 21 | 1 |
| 16 | 48.06 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 18 | 48.10 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 23 | 7 |
| 20 | 48.14 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 23 | 48.16 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 7 | 4 |
| 28 | 48.18 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 30 | 48.19 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 8 | 3 |
| 34 | 48.20 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 37 | 48.22 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 6 | 5 |
| 45 | 48.24 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 15 | 3 |
| 77 | 48.29 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 136 | 48.33 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 159 | 48.34 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 168 | 48.34 | atmosphere | 1005.0 | 14400 | > th | dose dependent | sin | 3 | NA |
| 171 | 48.34 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 187 | 48.35 | atmosphere | 1010.0 | 14400 | > th | dose independent | sin | 1 | NA |
| 189 | 48.35 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 203 | 48.35 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 5 | 18 |
| 333 | 48.38 | atmosphere | 1010.0 | 14400 | < th | dose independent | sin | 0 | NA |
| 376 | 48.38 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 19 | 16 |
| 491 | 48.40 | atmosphere | 1010.0 | 14400 | > th | dose dependent | sin | 22 | NA |
| 494 | 48.40 | atmosphere | 1005.0 | 14400 | > th | dose dependent | no | NA | NA |
| 539 | 48.40 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 8 | 23 |
| 601 | 48.41 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 10 | 21 |
| 615 | 48.42 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 773 | 48.45 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 18 | 5 |
| 833 | 48.46 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 892 | 48.47 | atmosphere | 1010.0 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 986 | 48.49 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 18 | 21 |