BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0152400 Os03g0152400|J075140K23
(92 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G05160.1 | chr4:2664451-2666547 FORWARD LENGTH=545 79 5e-16
AT3G21240.1 | chr3:7454497-7457314 REVERSE LENGTH=557 74 2e-14
AT1G20500.1 | chr1:7100502-7102847 REVERSE LENGTH=551 71 1e-13
AT3G21230.1 | chr3:7448231-7451947 REVERSE LENGTH=571 71 1e-13
AT4G19010.1 | chr4:10411715-10414221 REVERSE LENGTH=567 71 1e-13
AT1G20510.1 | chr1:7103645-7105856 REVERSE LENGTH=547 70 3e-13
AT1G65060.1 | chr1:24167385-24171457 REVERSE LENGTH=562 70 3e-13
AT1G20480.1 | chr1:7094978-7097073 REVERSE LENGTH=566 69 4e-13
AT5G38120.1 | chr5:15213773-15216137 FORWARD LENGTH=551 66 3e-12
AT5G63380.1 | chr5:25387581-25390026 REVERSE LENGTH=563 64 2e-11
AT1G51680.1 | chr1:19159007-19161464 REVERSE LENGTH=562 60 3e-10
AT1G62940.1 | chr1:23310554-23312747 FORWARD LENGTH=543 57 3e-09
AT3G48990.1 | chr3:18159031-18161294 REVERSE LENGTH=515 54 1e-08
AT2G47240.1 | chr2:19393835-19397616 FORWARD LENGTH=661 50 3e-07
AT3G05970.1 | chr3:1786510-1791746 REVERSE LENGTH=702 47 2e-06
>AT4G05160.1 | chr4:2664451-2666547 FORWARD LENGTH=545
Length = 544
Score = 79.0 bits (193), Expect = 5e-16, Method: Composition-based stats.
Identities = 36/50 (72%), Positives = 42/50 (84%), Gaps = 1/50 (2%)
Query: 37 GYFNNVQATEFTI-KQGWLHTGDLGYFDGGGQLFVVDRLKELIKYKGFQV 85
GY NN QAT+ TI K+ W+HTGDLGYF+ G L+VVDR+KELIKYKGFQV
Sbjct: 402 GYLNNPQATKETIDKKSWVHTGDLGYFNEDGNLYVVDRIKELIKYKGFQV 451
>AT3G21240.1 | chr3:7454497-7457314 REVERSE LENGTH=557
Length = 556
Score = 73.6 bits (179), Expect = 2e-14, Method: Composition-based stats.
Identities = 37/69 (53%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 18 SCNNNRTKQLLTYLNVAFVGYFNNVQATEFTI-KQGWLHTGDLGYFDGGGQLFVVDRLKE 76
S N+ ++ N GY N+ AT TI K GWLHTGD+G+ D +LF+VDRLKE
Sbjct: 393 SLPRNKPGEICIRGNQIMKGYLNDPLATASTIDKDGWLHTGDVGFIDDDDELFIVDRLKE 452
Query: 77 LIKYKGFQV 85
LIKYKGFQV
Sbjct: 453 LIKYKGFQV 461
>AT1G20500.1 | chr1:7100502-7102847 REVERSE LENGTH=551
Length = 550
Score = 71.2 bits (173), Expect = 1e-13, Method: Composition-based stats.
Identities = 35/50 (70%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Query: 37 GYFNNVQATEFTIK-QGWLHTGDLGYFDGGGQLFVVDRLKELIKYKGFQV 85
GYF N +AT TI +GWL TGDL Y D G LFVVDRLKELIKYKG+QV
Sbjct: 408 GYFKNQEATNETINLEGWLKTGDLCYIDEDGFLFVVDRLKELIKYKGYQV 457
>AT3G21230.1 | chr3:7448231-7451947 REVERSE LENGTH=571
Length = 570
Score = 71.2 bits (173), Expect = 1e-13, Method: Composition-based stats.
Identities = 33/70 (47%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Query: 17 LSCNNNRTKQLLTYLNVAFVGYFNNVQATEFTI-KQGWLHTGDLGYFDGGGQLFVVDRLK 75
+S N++ ++ + GY N+ +AT TI K GWLHTGD+G+ D ++F+VDRLK
Sbjct: 406 ISLPRNKSGEICVRGHQLMKGYLNDPEATARTIDKDGWLHTGDIGFVDDDDEIFIVDRLK 465
Query: 76 ELIKYKGFQV 85
ELIK+KG+QV
Sbjct: 466 ELIKFKGYQV 475
>AT4G19010.1 | chr4:10411715-10414221 REVERSE LENGTH=567
Length = 566
Score = 70.9 bits (172), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/50 (60%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
Query: 37 GYFNNVQATEFTI-KQGWLHTGDLGYFDGGGQLFVVDRLKELIKYKGFQV 85
GY NN +AT+ +I + WL TGD+ YFD G LF+VDR+KE+IKYKGFQ+
Sbjct: 420 GYLNNPKATQMSIVEDSWLRTGDIAYFDEDGYLFIVDRIKEIIKYKGFQI 469
>AT1G20510.1 | chr1:7103645-7105856 REVERSE LENGTH=547
Length = 546
Score = 69.7 bits (169), Expect = 3e-13, Method: Composition-based stats.
Identities = 33/50 (66%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
Query: 37 GYFNNVQATEFTI-KQGWLHTGDLGYFDGGGQLFVVDRLKELIKYKGFQV 85
GYF+N +AT T+ +GWL TGDL Y D G +FVVDRLKELIKYKG+QV
Sbjct: 402 GYFSNEEATSSTLDSEGWLRTGDLCYIDEDGFIFVVDRLKELIKYKGYQV 451
>AT1G65060.1 | chr1:24167385-24171457 REVERSE LENGTH=562
Length = 561
Score = 69.7 bits (169), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/49 (61%), Positives = 40/49 (81%), Gaps = 1/49 (2%)
Query: 38 YFNNVQATEFTI-KQGWLHTGDLGYFDGGGQLFVVDRLKELIKYKGFQV 85
Y N+ +AT TI ++GWLHTGD+GY D ++F+VDRLKE+IK+KGFQV
Sbjct: 423 YLNDPEATSATIDEEGWLHTGDIGYVDEDDEIFIVDRLKEVIKFKGFQV 471
>AT1G20480.1 | chr1:7094978-7097073 REVERSE LENGTH=566
Length = 565
Score = 69.3 bits (168), Expect = 4e-13, Method: Composition-based stats.
Identities = 36/65 (55%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 22 NRTKQLLTYLNVAFVGYFNNVQATEFTI-KQGWLHTGDLGYFDGGGQLFVVDRLKELIKY 80
N+T +L GYF N +AT TI +GWL TGDL Y DG G +FVVDRLKELIK
Sbjct: 408 NQTGELWIRSPTVMKGYFKNKEATASTIDSEGWLKTGDLCYIDGDGFVFVVDRLKELIKC 467
Query: 81 KGFQV 85
G+QV
Sbjct: 468 NGYQV 472
>AT5G38120.1 | chr5:15213773-15216137 FORWARD LENGTH=551
Length = 550
Score = 66.2 bits (160), Expect = 3e-12, Method: Composition-based stats.
Identities = 31/49 (63%), Positives = 35/49 (71%), Gaps = 2/49 (4%)
Query: 37 GYFNNVQATEFTIKQGWLHTGDLGYFDGGGQLFVVDRLKELIKYKGFQV 85
GYF N + E +GWL TGDL Y D G LF+VDRLKELIKYKG+QV
Sbjct: 411 GYFRNEE--EIITSEGWLKTGDLCYIDNDGFLFIVDRLKELIKYKGYQV 457
>AT5G63380.1 | chr5:25387581-25390026 REVERSE LENGTH=563
Length = 562
Score = 63.9 bits (154), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/64 (51%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 23 RTKQLLTYLNVAFVGYFNNVQATEFTI-KQGWLHTGDLGYFDGGGQLFVVDRLKELIKYK 81
+T +L V GY N +A+ T+ K+GWL TGDL YFD L++VDRLKELIKYK
Sbjct: 402 KTGELWLRGPVIMKGYVGNEKASAETVDKEGWLKTGDLCYFDSEDFLYIVDRLKELIKYK 461
Query: 82 GFQV 85
+QV
Sbjct: 462 AYQV 465
>AT1G51680.1 | chr1:19159007-19161464 REVERSE LENGTH=562
Length = 561
Score = 59.7 bits (143), Expect = 3e-10, Method: Composition-based stats.
Identities = 35/50 (70%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Query: 37 GYFNNVQATEFTI-KQGWLHTGDLGYFDGGGQLFVVDRLKELIKYKGFQV 85
GY NN AT TI K GWLHTGD+G D +LF+VDRLKELIKYKGFQV
Sbjct: 419 GYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQV 468
>AT1G62940.1 | chr1:23310554-23312747 FORWARD LENGTH=543
Length = 542
Score = 56.6 bits (135), Expect = 3e-09, Method: Composition-based stats.
Identities = 37/69 (53%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Query: 18 SCNNNRTKQLLTYLNVAFVGYFNNVQATEFTI-KQGWLHTGDLGYFDGGGQLFVVDRLKE 76
S N + +L GYF N + T+ TI +QGWLHTGD+GY D G +F+VDR+KE
Sbjct: 379 SLPKNTSGELCVRSQCVMQGYFMNKEETDKTIDEQGWLHTGDIGYIDDDGDIFIVDRIKE 438
Query: 77 LIKYKGFQV 85
LIKYKGFQV
Sbjct: 439 LIKYKGFQV 447
>AT3G48990.1 | chr3:18159031-18161294 REVERSE LENGTH=515
Length = 514
Score = 54.3 bits (129), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 33/52 (63%)
Query: 37 GYFNNVQATEFTIKQGWLHTGDLGYFDGGGQLFVVDRLKELIKYKGFQVKKL 88
GY NN +A + + GW HTGD+GYFD G L +V R+KELI G ++ +
Sbjct: 373 GYKNNPEANKAGFEFGWFHTGDIGYFDTDGYLHLVGRIKELINRGGEKISPI 424
>AT2G47240.1 | chr2:19393835-19397616 FORWARD LENGTH=661
Length = 660
Score = 50.1 bits (118), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/45 (48%), Positives = 28/45 (62%)
Query: 35 FVGYFNNVQATEFTIKQGWLHTGDLGYFDGGGQLFVVDRLKELIK 79
F GY+ N + TE +K GW HTGD+G G L ++DR K LIK
Sbjct: 476 FSGYYKNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIK 520
>AT3G05970.1 | chr3:1786510-1791746 REVERSE LENGTH=702
Length = 701
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 33 VAFVGYFNN-VQATEFTIKQGWLHTGDLGYFDGGGQLFVVDRLKELIK 79
+ F GY+ + +Q E + GWLHTGD+G + GG+L ++DR K + K
Sbjct: 507 IIFTGYYKDEIQTKEVIDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFK 554
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.145 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,079,086
Number of extensions: 76212
Number of successful extensions: 216
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 15
Length of query: 92
Length of database: 11,106,569
Length adjustment: 63
Effective length of query: 29
Effective length of database: 9,379,361
Effective search space: 272001469
Effective search space used: 272001469
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 104 (44.7 bits)