Os02g0177600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1) (4-coumaroyl-CoA synthase 1) (Clone 4CL14) (Fragment).
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Os02g0177600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1) (4-coumaroyl-CoA synthase 1) (Clone 4CL14) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 293.45 | 0.805 | 8.88 | -0.513 | 2.23 | 0.299 | 0.0499 | 5.38 | 0.243 | 8.54 | 27.32 | 4312 | -- | -- |
| 311.39 | 0.822 | 8.72 | 0.447 | 2.36 | -1.11 | 0.457 | -- | 0.46 | 8.28 | 16.12 | 7638 | -- | -- |
| 293.44 | 0.798 | 8.87 | -0.485 | 2.23 | 0.317 | -- | 5.31 | 0.249 | 8.55 | 26.7 | 4302 | -- | -- |
| 303.91 | 0.812 | 8.71 | 0.268 | 2.26 | -2.12 | -- | -- | 0.447 | 8.58 | 15.7 | 6563 | -- | -- |
| 525.13 | 1.07 | 8.81 | 0.0838 | -- | 1.77 | -- | 6.16 | 0.578 | -- | 35.2 | 607 | -- | -- |
| 324.92 | 0.845 | 8.67 | 0.739 | 2.23 | -- | -0.034 | -- | 0.582 | 8.56 | -- | -- | -- | -- |
| 324.92 | 0.844 | 8.67 | 0.738 | 2.23 | -- | -- | -- | 0.582 | 8.56 | -- | -- | -- | -- |
| 550.27 | 1.09 | 8.66 | 1.16 | -- | 1.8 | -- | -- | 0.866 | -- | 35.4 | 613 | -- | -- |
| 305.17 | 0.814 | 8.71 | -- | 2.24 | -2.12 | -- | -- | 0.411 | 8.6 | 16.13 | 7049 | -- | -- |
| 605.13 | 1.15 | 8.73 | 0.746 | -- | -- | -- | -- | 0.603 | -- | -- | -- | -- | -- |
| 339.27 | 0.862 | 8.69 | -- | 2.24 | -- | -- | -- | 0.5 | 8.53 | -- | -- | -- | -- |
| 584.33 | 1.13 | 8.71 | -- | -- | 1.45 | -- | -- | 0.696 | -- | 107.2 | 602 | -- | -- |
| 619.81 | 1.16 | 8.75 | -- | -- | -- | -- | -- | 0.52 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 282.49 | temperature | 30 | 10 | < th | dose dependent | sin | 17 | NA |
| 5 | 283.97 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 15 |
| 6 | 283.98 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 14 |
| 8 | 284.77 | temperature | 30 | 270 | < th | dose dependent | sin | 20 | NA |
| 15 | 285.27 | temperature | 10 | 270 | > th | dose dependent | rect. | 13 | 22 |
| 17 | 285.46 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 16 |
| 33 | 286.74 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 21 |
| 36 | 286.91 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 22 |
| 42 | 287.11 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 20 |
| 101 | 289.05 | wind | 7 | 1440 | > th | dose dependent | rect. | 22 | 12 |
| 118 | 289.40 | temperature | 20 | 270 | < th | dose dependent | rect. | 22 | 20 |
| 139 | 289.71 | temperature | 10 | 270 | > th | dose dependent | rect. | 13 | 12 |
| 145 | 289.81 | temperature | 20 | 270 | < th | dose dependent | sin | 5 | NA |
| 163 | 290.04 | temperature | 20 | 270 | < th | dose dependent | rect. | 4 | 14 |
| 191 | 290.43 | temperature | 10 | 270 | > th | dose dependent | sin | 17 | NA |
| 199 | 290.51 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 14 |
| 212 | 290.65 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 22 |
| 221 | 290.76 | temperature | 20 | 270 | < th | dose dependent | rect. | 4 | 6 |
| 280 | 291.35 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 21 |
| 286 | 291.40 | temperature | 30 | 4320 | < th | dose dependent | rect. | 24 | 1 |
| 289 | 291.43 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 14 |
| 295 | 291.50 | wind | 7 | 720 | > th | dose independent | sin | 8 | NA |
| 306 | 291.55 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 21 |
| 311 | 291.61 | temperature | 10 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 319 | 291.64 | temperature | 15 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 321 | 291.69 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 4 |
| 332 | 291.82 | humidity | 90 | 14400 | > th | dose independent | rect. | 1 | 6 |
| 364 | 292.11 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 4 |
| 375 | 292.22 | temperature | 25 | 4320 | < th | dose independent | rect. | 24 | 17 |
| 391 | 292.32 | wind | 7 | 1440 | < th | dose independent | rect. | 21 | 14 |
| 405 | 292.41 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 15 |
| 406 | 292.41 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 15 |
| 425 | 292.51 | wind | 7 | 1440 | > th | dose independent | rect. | 21 | 14 |
| 431 | 292.52 | temperature | 30 | 10 | < th | dose dependent | rect. | 8 | 22 |
| 470 | 292.64 | temperature | 25 | 270 | < th | dose independent | sin | 20 | NA |
| 503 | 292.74 | temperature | 10 | 4320 | > th | dose dependent | sin | 7 | NA |
| 505 | 292.75 | atmosphere | 1015 | 720 | < th | dose independent | rect. | 24 | 7 |
| 513 | 292.76 | temperature | 30 | 4320 | < th | dose dependent | sin | 7 | NA |
| 542 | 292.82 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 2 |
| 592 | 292.92 | temperature | 15 | 1440 | > th | dose independent | rect. | 6 | 5 |
| 649 | 293.05 | temperature | 10 | 10 | > th | dose dependent | sin | 15 | NA |
| 691 | 293.13 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 693 | 293.14 | wind | 7 | 720 | > th | dose dependent | sin | 8 | NA |
| 738 | 293.23 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 8 |
| 753 | 293.26 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 18 |
| 799 | 293.34 | wind | 9 | 1440 | > th | dose independent | rect. | 22 | 12 |
| 856 | 293.44 | wind | 7 | 720 | > th | dose independent | rect. | 19 | 17 |
| 869 | 293.46 | wind | 9 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 975 | 293.62 | temperature | 30 | 4320 | < th | dose dependent | rect. | 11 | 18 |
| 977 | 293.63 | humidity | 90 | 14400 | < th | dose independent | rect. | 2 | 5 |
| 992 | 293.64 | temperature | 30 | 4320 | < th | dose dependent | rect. | 11 | 22 |