FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0310700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : AMP-dependent synthetase and ligase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.06 (0.0353) R2 : 0.000374
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0307 (0.0744) R2dN8 : 0.000483 R2N8 : 0.000374
σ : 0.666
deviance : 203.41
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
172.27 0.617 3.09 -0.722 0.0813 2.06 -0.779 -5.41 -0.0569 16.1 0.3294 6 -- --
183 0.63 3.08 -0.708 0.0605 1.04 -0.548 -- -0.0843 16.2 0.529 5 -- --
173.87 0.614 3.09 -0.738 0.0773 2.08 -- -5.17 -0.0623 15.2 0.2491 5 -- --
183.63 0.631 3.07 -0.709 0.0536 1.1 -- -- -0.0746 15.6 0.5433 5 -- --
173.89 0.614 3.09 -0.752 -- 2.08 -- -5.31 -0.0695 -- 0.1094 5 -- --
190.55 0.647 3.08 -0.66 0.0278 -- 0.679 -- -0.102 4.64 -- -- -- --
191.76 0.648 3.08 -0.664 0.0357 -- -- -- -0.105 6.09 -- -- -- --
183.8 0.631 3.08 -0.713 -- 1.06 -- -- -0.0783 -- 0.5237 5 -- --
196.86 0.653 3.06 -- 0.0676 0.972 -- -- -0.00188 15.1 0.5794 5 -- --
191.82 0.647 3.08 -0.663 -- -- -- -- -0.104 -- -- -- -- --
203.37 0.667 3.06 -- 0.0275 -- -- -- -0.0311 7.34 -- -- -- --
197.09 0.654 3.06 -- -- 0.932 -- -- -0.00296 -- 0.5537 5 -- --
203.41 0.666 3.06 -- -- -- -- -- -0.0307 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 161.20 wind 1.0 90 < th dose dependent rect. 1 1
2 161.57 wind 7.0 1440 > th dose independent rect. 3 1
3 161.57 wind 7.0 1440 > th dose dependent rect. 3 1
13 162.59 wind 1.0 90 < th dose independent rect. 1 1
14 162.70 wind 1.0 10 < th dose dependent rect. 1 1
18 163.42 wind 1.0 10 < th dose dependent rect. 22 4
19 163.60 wind 1.0 10 < th dose dependent rect. 17 9
29 164.31 wind 1.0 10 < th dose dependent rect. 11 15
67 168.40 wind 1.0 10 < th dose independent rect. 22 4
68 168.60 wind 1.0 10 < th dose independent rect. 15 11
80 168.89 temperature 20.0 30 > th dose independent rect. 24 2
92 170.90 wind 1.0 10 < th dose dependent rect. 6 20
98 172.33 wind 1.0 10 < th dose dependent sin 17 NA
102 172.85 temperature 20.0 10 > th dose dependent rect. 1 1
111 173.22 radiation 1.0 90 < th dose independent rect. 10 1
113 173.22 radiation 1.0 90 < th dose dependent rect. 10 1
116 173.36 radiation 1.0 10 < th dose independent rect. 7 5
118 173.36 radiation 1.0 10 < th dose dependent rect. 7 5
126 173.47 radiation 1.0 10 < th dose independent rect. 11 1
143 173.47 radiation 1.0 10 < th dose dependent rect. 11 1
160 173.61 temperature 15.0 90 > th dose dependent rect. 24 2
166 173.91 radiation 20.0 10 < th dose independent rect. 11 2
232 176.75 humidity 80.0 30 > th dose independent rect. 24 2
249 177.35 temperature 10.0 720 > th dose dependent rect. 12 1
251 177.37 atmosphere 1000.0 30 > th dose independent rect. 24 12
254 177.39 atmosphere 1000.0 720 > th dose independent rect. 24 1
257 177.43 humidity 80.0 720 > th dose independent rect. 24 1
265 177.48 humidity 50.0 30 > th dose independent rect. 24 12
266 177.48 humidity 70.0 30 > th dose dependent rect. 24 2
268 177.62 precipitation 0.1 30 < th dose independent rect. 24 12
269 177.62 precipitation 0.1 30 < th dose dependent rect. 24 12
272 177.73 temperature 10.0 1440 > th dose independent rect. 1 12
275 177.73 temperature 10.0 1440 > th dose independent rect. 13 12
278 177.73 atmosphere 995.0 1440 > th dose independent rect. 1 12
281 177.75 wind 7.0 720 < th dose independent rect. 24 1
282 177.75 wind 9.0 30 < th dose independent rect. 12 12
286 177.76 temperature 10.0 720 > th dose independent rect. 24 1
287 177.76 temperature 30.0 720 < th dose independent rect. 24 1
288 177.76 humidity 50.0 720 > th dose independent rect. 24 1
292 177.76 radiation 1.0 720 < th dose independent rect. 24 1
297 177.76 temperature 10.0 720 > th dose independent rect. 1 23
298 177.76 radiation 1.0 720 < th dose dependent rect. 24 1
303 177.77 temperature 10.0 720 > th dose independent rect. 12 1
304 177.77 atmosphere 995.0 720 > th dose independent rect. 12 1
305 177.77 atmosphere 1015.0 720 < th dose independent rect. 12 1
309 177.77 temperature 10.0 720 > th dose independent rect. 13 23
311 177.78 precipitation 0.1 720 < th dose independent rect. 24 1
314 177.78 precipitation 0.1 720 < th dose dependent rect. 24 1
316 177.80 wind 9.0 720 < th dose independent rect. 12 1
318 177.81 precipitation 0.1 720 < th dose independent rect. 12 1
319 177.81 wind 1.0 10 < th dose independent rect. 6 20
320 177.81 precipitation 0.1 720 < th dose dependent rect. 12 1
323 177.83 temperature 15.0 30 > th dose independent rect. 24 12
326 177.87 temperature 10.0 30 > th dose independent rect. 12 12
330 177.89 atmosphere 995.0 720 > th dose independent rect. 13 23
331 177.90 atmosphere 1015.0 30 < th dose independent rect. 24 12
334 177.92 precipitation 0.1 30 < th dose independent rect. 12 12
335 177.92 precipitation 0.1 30 < th dose dependent rect. 12 12
342 177.98 atmosphere 1015.0 90 < th dose dependent rect. 24 1
345 178.00 precipitation 0.1 720 < th dose independent rect. 13 23
346 178.00 precipitation 0.1 720 < th dose dependent rect. 13 23
348 178.03 atmosphere 995.0 30 > th dose independent rect. 12 12
352 178.09 humidity 50.0 720 > th dose independent rect. 12 1
357 178.14 wind 1.0 30 > th dose independent rect. 12 12
367 178.22 radiation 30.0 30 < th dose independent rect. 24 13
370 178.24 wind 9.0 30 < th dose independent rect. 2 22
389 178.42 atmosphere 995.0 720 > th dose independent rect. 1 23
393 178.48 wind 1.0 720 > th dose independent rect. 12 1
401 178.54 radiation 1.0 4320 < th dose dependent rect. 1 2
416 178.62 temperature 10.0 720 > th dose dependent rect. 24 1
417 178.62 wind 1.0 10 < th dose dependent rect. 1 8
420 178.64 wind 1.0 10 < th dose dependent rect. 1 5
426 178.67 wind 1.0 90 > th dose independent rect. 1 23
466 178.68 temperature 10.0 1440 > th dose independent rect. 3 22
476 178.69 wind 9.0 30 < th dose independent rect. 24 12
487 178.75 wind 1.0 90 < th dose independent rect. 10 16
498 178.80 atmosphere 1000.0 30 > th dose independent rect. 24 2
502 178.81 precipitation 0.1 30 < th dose independent rect. 24 2
503 178.81 precipitation 0.1 30 < th dose dependent rect. 24 2
506 178.85 temperature 30.0 90 < th dose independent rect. 24 12
512 178.88 radiation 20.0 90 < th dose independent rect. 10 16
513 178.90 humidity 50.0 30 > th dose independent rect. 12 12
515 178.91 atmosphere 1010.0 30 < th dose independent rect. 24 2
520 178.96 temperature 30.0 720 < th dose independent rect. 5 7
524 178.98 temperature 30.0 30 < th dose independent rect. 24 2
525 178.98 humidity 50.0 30 > th dose independent rect. 24 2
530 178.98 radiation 1.0 30 < th dose independent rect. 24 2
536 178.98 temperature 10.0 30 > th dose independent rect. 2 22
537 178.98 radiation 1.0 30 < th dose dependent rect. 24 2
542 178.99 wind 9.0 30 < th dose independent rect. 24 2
558 179.06 atmosphere 995.0 30 > th dose independent rect. 2 22
559 179.06 precipitation 0.1 30 < th dose independent rect. 2 22
561 179.06 precipitation 0.1 30 < th dose dependent rect. 2 22
572 179.20 temperature 30.0 720 < th dose independent rect. 24 9
591 179.29 wind 1.0 720 > th dose independent rect. 17 7
592 179.29 radiation 40.0 30 < th dose independent rect. 13 11
631 179.54 temperature 30.0 720 < th dose independent rect. 21 15
663 179.62 atmosphere 1000.0 720 > th dose independent rect. 24 9
696 179.71 radiation 1.0 720 > th dose independent rect. 12 1
718 179.78 temperature 10.0 30 > th dose dependent rect. 12 12
725 179.81 atmosphere 1010.0 720 < th dose independent rect. 24 1
755 179.94 atmosphere 1015.0 30 < th dose independent rect. 12 12
759 179.94 atmosphere 1015.0 720 < th dose dependent rect. 12 1
775 180.01 atmosphere 1000.0 720 > th dose independent rect. 5 7
777 180.01 radiation 40.0 30 < th dose dependent rect. 24 13
782 180.05 temperature 20.0 90 < th dose dependent rect. 16 3
783 180.06 temperature 20.0 90 < th dose independent rect. 16 3
787 180.07 temperature 30.0 30 < th dose independent rect. 12 12
808 180.16 precipitation 0.1 720 < th dose independent rect. 24 17
809 180.16 precipitation 0.1 720 < th dose dependent rect. 24 17
848 180.33 wind 1.0 270 < th dose dependent rect. 22 1
849 180.35 precipitation 0.1 720 < th dose independent rect. 24 9
852 180.35 precipitation 0.1 720 < th dose dependent rect. 24 9
854 180.38 humidity 50.0 720 > th dose dependent rect. 24 1
856 180.40 atmosphere 995.0 720 > th dose independent rect. 24 17
864 180.44 atmosphere 995.0 30 > th dose dependent rect. 24 2
866 180.45 humidity 60.0 720 > th dose independent rect. 24 9
869 180.49 wind 1.0 10 < th dose dependent rect. 1 22
876 180.53 atmosphere 1000.0 720 > th dose independent rect. 21 15
877 180.55 temperature 30.0 720 < th dose independent rect. 12 1
885 180.60 temperature 10.0 720 > th dose independent rect. 12 9
886 180.60 temperature 10.0 720 > th dose independent rect. 21 15
888 180.61 precipitation 0.1 720 < th dose independent rect. 5 7
889 180.61 precipitation 0.1 720 < th dose independent rect. 17 7
890 180.61 wind 9.0 720 < th dose independent rect. 24 9
893 180.61 precipitation 0.1 720 < th dose dependent rect. 5 7
894 180.61 precipitation 0.1 720 < th dose dependent rect. 17 7
901 180.64 temperature 10.0 720 > th dose independent rect. 24 9
907 180.64 temperature 10.0 720 > th dose independent rect. 9 15
911 180.68 humidity 50.0 720 > th dose independent rect. 5 7
912 180.68 precipitation 0.1 720 < th dose independent rect. 1 23
914 180.68 precipitation 0.1 720 < th dose dependent rect. 1 23
915 180.69 atmosphere 995.0 720 > th dose independent rect. 12 17
916 180.69 radiation 30.0 90 < th dose dependent rect. 10 16
917 180.71 atmosphere 995.0 720 > th dose independent rect. 12 9
918 180.72 temperature 10.0 720 > th dose independent rect. 17 7
919 180.72 radiation 30.0 720 < th dose independent rect. 17 7
922 180.72 temperature 10.0 720 > th dose independent rect. 24 17
927 180.74 temperature 10.0 720 > th dose independent rect. 5 7
929 180.74 atmosphere 1015.0 720 < th dose independent rect. 5 7
930 180.74 humidity 50.0 720 > th dose independent rect. 21 15
931 180.74 temperature 10.0 720 > th dose independent rect. 12 17
939 180.76 atmosphere 995.0 720 > th dose independent rect. 9 15
942 180.80 humidity 90.0 90 > th dose independent rect. 16 3
946 180.81 wind 9.0 720 < th dose dependent rect. 12 1
951 180.82 wind 1.0 10 < th dose dependent rect. 22 9
980 180.85 atmosphere 995.0 720 > th dose independent rect. 17 7