Os06g0656500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1) (4-coumaroyl-CoA synthase 1) (Clone 4CL14) (Fragment).
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Os06g0656500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1) (4-coumaroyl-CoA synthase 1) (Clone 4CL14) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 98.9 | 0.463 | 10.4 | -0.228 | 0.533 | 0.943 | -1.82 | 0.434 | 0.445 | 19 | 20 | 30 | -- | -- |
| 99.25 | 0.464 | 10.4 | -0.22 | 0.52 | 1.02 | -1.75 | -- | 0.448 | 18.3 | 20 | 30 | -- | -- |
| 106.78 | 0.481 | 10.4 | -0.191 | 0.499 | 1.02 | -- | 0.125 | 0.471 | 18.4 | 20 | 32 | -- | -- |
| 106.51 | 0.481 | 10.4 | -0.207 | 0.524 | 0.95 | -- | -- | 0.441 | 19.1 | 20 | 30 | -- | -- |
| 118.81 | 0.508 | 10.4 | -0.135 | -- | 1.05 | -- | -0.13 | 0.456 | -- | 18.7 | 18 | -- | -- |
| 120.93 | 0.516 | 10.5 | -0.245 | 1.21 | -- | -0.411 | -- | 0.377 | 22.4 | -- | -- | -- | -- |
| 121.57 | 0.516 | 10.5 | -0.23 | 1.21 | -- | -- | -- | 0.377 | 22.5 | -- | -- | -- | -- |
| 118.47 | 0.507 | 10.4 | -0.212 | -- | 1.04 | -- | -- | 0.412 | -- | 18.76 | 16 | -- | -- |
| 107.62 | 0.483 | 10.4 | -- | 0.523 | 0.95 | -- | -- | 0.463 | 19 | 20 | 30 | -- | -- |
| 211.31 | 0.679 | 10.4 | -0.209 | -- | -- | -- | -- | 0.382 | -- | -- | -- | -- | -- |
| 122.96 | 0.519 | 10.5 | -- | 1.21 | -- | -- | -- | 0.403 | 22.5 | -- | -- | -- | -- |
| 119.5 | 0.509 | 10.4 | -- | -- | 1.04 | -- | -- | 0.424 | -- | 18.52 | 13 | -- | -- |
| 212.46 | 0.68 | 10.4 | -- | -- | -- | -- | -- | 0.405 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 86.98 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 14 | 16 |
| 2 | 87.09 | temperature | 20.0 | 270 | > th | dose independent | rect. | 14 | 16 |
| 15 | 90.57 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 13 | 20 |
| 19 | 90.71 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 17 | 14 |
| 35 | 91.72 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 23 | 8 |
| 41 | 91.97 | radiation | 40.0 | 270 | < th | dose independent | rect. | 12 | 18 |
| 45 | 92.21 | temperature | 20.0 | 270 | > th | dose independent | rect. | 23 | 8 |
| 60 | 92.94 | temperature | 15.0 | 270 | > th | dose independent | rect. | 10 | 9 |
| 61 | 92.95 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 8 |
| 63 | 92.95 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 8 |
| 64 | 92.99 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 8 |
| 65 | 92.99 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 8 |
| 66 | 92.99 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 8 |
| 67 | 92.99 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 16 |
| 69 | 93.13 | radiation | 20.0 | 90 | < th | dose independent | rect. | 13 | 19 |
| 70 | 93.14 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 8 |
| 72 | 93.17 | temperature | 20.0 | 270 | > th | dose independent | rect. | 1 | 18 |
| 78 | 93.32 | temperature | 20.0 | 90 | > th | dose independent | rect. | 17 | 15 |
| 85 | 93.49 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 14 | 16 |
| 89 | 93.58 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 1 | 7 |
| 94 | 93.69 | humidity | 90.0 | 270 | < th | dose independent | rect. | 11 | 8 |
| 97 | 93.71 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 23 | 8 |
| 99 | 93.77 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 8 |
| 105 | 93.89 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 15 | 17 |
| 111 | 93.97 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 16 |
| 112 | 93.97 | temperature | 20.0 | 90 | > th | dose independent | rect. | 3 | 17 |
| 114 | 93.98 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 16 |
| 116 | 93.98 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 14 | 16 |
| 138 | 94.29 | radiation | 1.0 | 270 | < th | dose independent | sin | 4 | NA |
| 139 | 94.30 | radiation | 1.0 | 270 | > th | dose independent | rect. | 4 | 10 |
| 160 | 94.35 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 14 | 16 |
| 180 | 94.50 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 1 | 12 |
| 187 | 94.55 | radiation | 10.0 | 270 | < th | dose independent | rect. | 1 | 7 |
| 214 | 94.75 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 13 | 7 |
| 219 | 94.77 | humidity | 80.0 | 270 | > th | dose independent | rect. | 24 | 7 |
| 242 | 94.92 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 16 |
| 244 | 94.92 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 16 |
| 246 | 94.94 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 11 | 9 |
| 258 | 94.99 | radiation | 10.0 | 270 | < th | dose dependent | sin | 5 | NA |
| 293 | 95.19 | radiation | 40.0 | 90 | < th | dose independent | rect. | 12 | 8 |
| 303 | 95.24 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 11 | 8 |
| 304 | 95.24 | temperature | 10.0 | 270 | > th | dose independent | rect. | 19 | 16 |
| 305 | 95.24 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 16 |
| 310 | 95.26 | humidity | 50.0 | 270 | > th | dose independent | rect. | 19 | 16 |
| 320 | 95.32 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 14 |
| 321 | 95.32 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 17 |
| 335 | 95.38 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 11 | 8 |
| 336 | 95.38 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 11 | 8 |
| 340 | 95.39 | wind | 9.0 | 270 | < th | dose independent | rect. | 19 | 16 |
| 345 | 95.40 | humidity | 90.0 | 90 | < th | dose independent | rect. | 7 | 8 |
| 368 | 95.49 | wind | 1.0 | 270 | > th | dose independent | rect. | 11 | 8 |
| 372 | 95.50 | radiation | 20.0 | 90 | < th | dose independent | rect. | 15 | 17 |
| 407 | 95.65 | radiation | 1.0 | 90 | > th | dose independent | rect. | 7 | 10 |
| 415 | 95.71 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 23 | 8 |
| 429 | 95.77 | humidity | 90.0 | 10 | < th | dose independent | rect. | 7 | 9 |
| 458 | 95.91 | radiation | 40.0 | 10 | < th | dose independent | rect. | 13 | 7 |
| 463 | 95.91 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 482 | 95.98 | temperature | 10.0 | 270 | > th | dose independent | rect. | 24 | 7 |
| 483 | 95.98 | temperature | 30.0 | 270 | < th | dose independent | rect. | 24 | 7 |
| 484 | 95.98 | humidity | 50.0 | 270 | > th | dose independent | rect. | 24 | 7 |
| 486 | 95.98 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 24 | 7 |
| 488 | 95.98 | radiation | 40.0 | 270 | < th | dose independent | rect. | 24 | 7 |
| 489 | 95.98 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 17 |
| 499 | 96.00 | wind | 9.0 | 270 | < th | dose independent | rect. | 24 | 7 |
| 566 | 96.22 | humidity | 70.0 | 90 | > th | dose dependent | sin | 4 | NA |
| 580 | 96.26 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 11 | 8 |
| 584 | 96.26 | radiation | 1.0 | 270 | < th | dose dependent | sin | 3 | NA |
| 633 | 96.45 | humidity | 90.0 | 270 | < th | dose independent | rect. | 5 | 9 |
| 639 | 96.48 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 3 | 6 |
| 645 | 96.51 | wind | 9.0 | 270 | < th | dose independent | rect. | 11 | 8 |
| 663 | 96.56 | radiation | 10.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 676 | 96.61 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 3 | 11 |
| 685 | 96.65 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 16 |
| 687 | 96.65 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 16 |
| 711 | 96.74 | humidity | 80.0 | 90 | > th | dose independent | rect. | 3 | 6 |
| 732 | 96.76 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 8 | 8 |
| 740 | 96.78 | wind | 1.0 | 270 | > th | dose independent | rect. | 6 | 8 |
| 744 | 96.79 | radiation | 1.0 | 270 | > th | dose independent | sin | 5 | NA |
| 748 | 96.80 | radiation | 20.0 | 90 | < th | dose independent | rect. | 12 | 8 |
| 822 | 97.01 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 24 | 7 |
| 824 | 97.01 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 24 | 7 |
| 833 | 97.04 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 1 | 13 |
| 934 | 97.29 | radiation | 20.0 | 90 | < th | dose independent | rect. | 17 | 15 |
| 948 | 97.31 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 18 |
| 957 | 97.33 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 999 | 97.44 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 11 | 8 |