Os08g0448000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1) (4-coumaroyl-CoA synthase 1) (Clone 4CL14) (Fragment).
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Os08g0448000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1) (4-coumaroyl-CoA synthase 1) (Clone 4CL14) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 313.12 | 0.831 | 6.87 | -0.308 | 2.16 | 3.88 | 3.08 | 3.12 | 0.254 | 16.3 | 0.9899 | 750 | -- | -- |
| 318.26 | 0.831 | 6.86 | -0.222 | 2.28 | 3.95 | 1.26 | -- | 0.277 | 16.4 | 0.848 | 749 | -- | -- |
| 324.98 | 0.84 | 6.85 | -0.105 | 1.55 | 3.59 | -- | 1.44 | 0.243 | 16.4 | 0.9517 | 814 | -- | -- |
| 319.81 | 0.833 | 6.87 | -0.0983 | 1.61 | 3.6 | -- | -- | 0.275 | 16.8 | 0.9876 | 822 | -- | -- |
| 342.34 | 0.862 | 6.84 | 0.0934 | -- | 3.5 | -- | 1.65 | 0.355 | -- | 0.54 | 1209 | -- | -- |
| 343.46 | 0.869 | 6.82 | -0.476 | 1.3 | -- | 1.26 | -- | 0.163 | 8.8 | -- | -- | -- | -- |
| 348.54 | 0.874 | 6.82 | -0.437 | 1.3 | -- | -- | -- | 0.162 | 8.63 | -- | -- | -- | -- |
| 326.6 | 0.842 | 6.82 | -0.155 | -- | 2.26 | -- | -- | 0.334 | -- | 0.61 | 1117 | -- | -- |
| 319.89 | 0.833 | 6.85 | -- | 1.73 | 3.74 | -- | -- | 0.313 | 16.9 | 0.9811 | 822 | -- | -- |
| 444.25 | 0.985 | 6.85 | -0.433 | -- | -- | -- | -- | 0.173 | -- | -- | -- | -- | -- |
| 353.57 | 0.88 | 6.81 | -- | 1.3 | -- | -- | -- | 0.211 | 8.65 | -- | -- | -- | -- |
| 326.22 | 0.841 | 6.81 | -- | -- | 2.24 | -- | -- | 0.349 | -- | 0.82 | 1107 | -- | -- |
| 449.2 | 0.989 | 6.84 | -- | -- | -- | -- | -- | 0.222 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 304.08 | wind | 7 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 2 | 305.21 | wind | 7 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 3 | 306.48 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 3 |
| 4 | 307.20 | wind | 5 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 5 | 307.55 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 8 |
| 21 | 308.80 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 23 |
| 30 | 309.11 | temperature | 25 | 270 | < th | dose independent | rect. | 15 | 15 |
| 31 | 309.12 | radiation | 1 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 35 | 309.34 | temperature | 25 | 720 | < th | dose independent | rect. | 10 | 20 |
| 39 | 309.44 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 42 | 309.52 | temperature | 25 | 270 | < th | dose independent | rect. | 12 | 18 |
| 43 | 309.55 | radiation | 1 | 720 | > th | dose independent | sin | 14 | NA |
| 44 | 309.57 | wind | 5 | 4320 | > th | dose dependent | rect. | 17 | 4 |
| 45 | 309.64 | radiation | 1 | 720 | < th | dose independent | sin | 16 | NA |
| 56 | 309.82 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 8 |
| 64 | 310.05 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 21 |
| 84 | 310.23 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 11 |
| 93 | 310.37 | wind | 7 | 4320 | < th | dose independent | rect. | 14 | 8 |
| 108 | 310.50 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 23 |
| 109 | 310.51 | wind | 7 | 4320 | < th | dose independent | rect. | 14 | 10 |
| 117 | 310.58 | radiation | 1 | 720 | < th | dose independent | rect. | 19 | 23 |
| 121 | 310.64 | wind | 3 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 124 | 310.65 | radiation | 1 | 720 | < th | dose dependent | sin | 15 | NA |
| 128 | 310.68 | wind | 5 | 4320 | > th | dose dependent | rect. | 14 | 10 |
| 133 | 310.70 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 15 |
| 134 | 310.72 | wind | 5 | 4320 | > th | dose dependent | rect. | 15 | 7 |
| 136 | 310.76 | wind | 7 | 4320 | > th | dose independent | rect. | 14 | 8 |
| 141 | 310.82 | wind | 7 | 4320 | > th | dose independent | rect. | 14 | 10 |
| 156 | 310.98 | radiation | 1 | 720 | < th | dose independent | rect. | 6 | 16 |
| 160 | 311.02 | radiation | 1 | 720 | < th | dose independent | rect. | 6 | 18 |
| 164 | 311.07 | wind | 7 | 4320 | > th | dose independent | rect. | 15 | 6 |
| 192 | 311.31 | temperature | 25 | 720 | < th | dose independent | sin | 15 | NA |
| 208 | 311.40 | wind | 7 | 4320 | > th | dose dependent | rect. | 15 | 3 |
| 211 | 311.42 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 15 |
| 216 | 311.44 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 21 |
| 220 | 311.48 | wind | 9 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 222 | 311.49 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 20 |
| 234 | 311.52 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 19 |
| 265 | 311.64 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 23 |
| 267 | 311.65 | wind | 3 | 4320 | > th | dose dependent | rect. | 17 | 8 |
| 274 | 311.70 | temperature | 25 | 720 | < th | dose independent | sin | 12 | NA |
| 290 | 311.80 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 295 | 311.85 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 4 |
| 313 | 312.01 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 332 | 312.18 | temperature | 25 | 270 | > th | dose dependent | rect. | 23 | 5 |
| 333 | 312.19 | wind | 7 | 720 | < th | dose independent | rect. | 15 | 10 |
| 354 | 312.35 | temperature | 25 | 270 | > th | dose independent | rect. | 13 | 15 |
| 373 | 312.49 | wind | 7 | 4320 | < th | dose independent | sin | 16 | NA |
| 420 | 312.71 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 436 | 312.82 | radiation | 1 | 720 | < th | dose dependent | rect. | 11 | 20 |
| 438 | 312.84 | wind | 7 | 4320 | > th | dose independent | sin | 16 | NA |
| 452 | 312.89 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 8 |
| 494 | 313.08 | wind | 5 | 4320 | > th | dose dependent | sin | 16 | NA |
| 521 | 313.23 | radiation | 10 | 270 | < th | dose independent | rect. | 8 | 4 |
| 529 | 313.27 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 21 |
| 579 | 313.44 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 18 |
| 618 | 313.59 | radiation | 1 | 720 | > th | dose independent | sin | 22 | NA |
| 641 | 313.67 | wind | 9 | 4320 | < th | dose dependent | rect. | 17 | 9 |
| 657 | 313.70 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 19 |
| 705 | 313.90 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 19 |
| 725 | 313.98 | humidity | 80 | 1440 | < th | dose independent | rect. | 12 | 2 |
| 729 | 313.99 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 23 |
| 775 | 314.17 | temperature | 25 | 270 | > th | dose independent | rect. | 11 | 17 |
| 793 | 314.20 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 6 |
| 810 | 314.26 | wind | 7 | 720 | < th | dose independent | rect. | 15 | 12 |
| 814 | 314.27 | wind | 9 | 4320 | < th | dose dependent | rect. | 17 | 6 |
| 819 | 314.30 | humidity | 80 | 1440 | > th | dose independent | rect. | 12 | 2 |
| 833 | 314.33 | temperature | 25 | 720 | > th | dose dependent | rect. | 21 | 7 |
| 844 | 314.37 | radiation | 1 | 720 | < th | dose independent | no | NA | NA |
| 877 | 314.49 | humidity | 80 | 1440 | > th | dose independent | rect. | 12 | 5 |
| 885 | 314.51 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 892 | 314.54 | wind | 5 | 90 | < th | dose independent | rect. | 15 | 14 |
| 939 | 314.72 | humidity | 80 | 1440 | < th | dose independent | rect. | 12 | 5 |