Os08g0245200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1) (4-coumaroyl-CoA synthase 1).
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Os08g0245200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1) (4-coumaroyl-CoA synthase 1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 312.75 | 0.831 | 9.35 | -3.83 | 0.449 | 3.54 | -0.0557 | -1.24 | -0.86 | 18.7 | 20 | 1246 | -- | -- |
| 313.47 | 0.825 | 9.31 | -3.53 | 0.436 | 3.62 | -0.183 | -- | -0.782 | 18.3 | 19.13 | 1231 | -- | -- |
| 312.73 | 0.824 | 9.35 | -3.83 | 0.445 | 3.57 | -- | -1.17 | -0.862 | 18.7 | 19.8 | 1243 | -- | -- |
| 313.48 | 0.825 | 9.31 | -3.53 | 0.439 | 3.61 | -- | -- | -0.778 | 18.6 | 19.14 | 1234 | -- | -- |
| 320.28 | 0.834 | 9.34 | -3.76 | -- | 3.64 | -- | -1.02 | -0.843 | -- | 19.56 | 1122 | -- | -- |
| 657.51 | 1.2 | 9.14 | -2.25 | 0.6 | -- | 0.614 | -- | 0.0192 | 22.5 | -- | -- | -- | -- |
| 659.01 | 1.2 | 9.14 | -2.27 | 0.599 | -- | -- | -- | 0.0182 | 22.4 | -- | -- | -- | -- |
| 320.55 | 0.834 | 9.3 | -3.52 | -- | 3.69 | -- | -- | -0.77 | -- | 18.97 | 1114 | -- | -- |
| 593.72 | 1.13 | 9.17 | -- | 0.381 | 2.5 | -- | -- | -0.178 | 17.9 | 21.7 | 1140 | -- | -- |
| 680.95 | 1.22 | 9.12 | -2.26 | -- | -- | -- | -- | 0.02 | -- | -- | -- | -- | -- |
| 794.73 | 1.32 | 9.08 | -- | 0.588 | -- | -- | -- | 0.271 | 22.1 | -- | -- | -- | -- |
| 599.38 | 1.14 | 9.16 | -- | -- | 2.54 | -- | -- | -0.163 | -- | 21.6 | 1066 | -- | -- |
| 815.64 | 1.33 | 9.06 | -- | -- | -- | -- | -- | 0.271 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 309.86 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 7 |
| 19 | 314.23 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |
| 32 | 315.88 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 18 |
| 39 | 316.17 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 14 |
| 61 | 316.60 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 22 |
| 66 | 316.67 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 20 |
| 130 | 317.58 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 157 | 318.12 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 594 | 326.53 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 613 | 326.72 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 19 |
| 622 | 326.77 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 4 |