BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0686700 Os02g0686700|AK111294
(92 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0686700 Protein of unknown function DUF581 family protein 156 3e-39
Os04g0585700 Protein of unknown function DUF581 family protein 86 4e-18
Os02g0686900 79 1e-15
Os04g0586000 Protein of unknown function DUF581 family protein 74 2e-14
AK060089 74 2e-14
Os02g0686800 Protein of unknown function DUF581 family protein 69 6e-13
Os06g0714800 Protein of unknown function DUF581 family protein 67 2e-12
Os04g0586100 Protein of unknown function DUF581 family protein 65 9e-12
Os04g0586200 Similar to Senescence-associated protein SAG102 64 3e-11
Os02g0687200 Protein of unknown function DUF581 family protein 63 5e-11
>Os02g0686700 Protein of unknown function DUF581 family protein
Length = 92
Score = 156 bits (395), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 77/92 (83%), Positives = 77/92 (83%)
Query: 1 MGRGGHTHFLDACFLCRKRLAGNRDIFMYRGDTPFCSEECRREQMXXXXXXXXXXXXXXX 60
MGRGGHTHFLDACFLCRKRLAGNRDIFMYRGDTPFCSEECRREQM
Sbjct: 1 MGRGGHTHFLDACFLCRKRLAGNRDIFMYRGDTPFCSEECRREQMEADAAAERTEKARRA 60
Query: 61 GKLTRGAPSSRREVEGPQERGNSVRAGSILAL 92
GKLTRGAPSSRREVEGPQERGNSVRAGSILAL
Sbjct: 61 GKLTRGAPSSRREVEGPQERGNSVRAGSILAL 92
>Os04g0585700 Protein of unknown function DUF581 family protein
Length = 150
Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/84 (54%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 8 HFLDACFLCRKRLAGNRDIFMYRGDTPFCSEECRREQMXXXXXXXXXXXXXXXGKLTRGA 67
HFL+ACFLCRK LA NRDI+MYRGD PFCSEECRREQ+ K+
Sbjct: 68 HFLEACFLCRKPLASNRDIYMYRGDIPFCSEECRREQIEMDDEMERKEKKNISKKVAPRT 127
Query: 68 PSSRREVEGPQERGNSVRAGSILA 91
P REVE R RAGSILA
Sbjct: 128 PDP-REVES-TPRPPKARAGSILA 149
>Os02g0686900
Length = 125
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 38/43 (88%)
Query: 3 RGGHTHFLDACFLCRKRLAGNRDIFMYRGDTPFCSEECRREQM 45
RG H H+LDACFLC + LAGN+DIFMYRGDTPFCSEECR+ Q+
Sbjct: 43 RGRHHHYLDACFLCGRMLAGNKDIFMYRGDTPFCSEECRQRQI 85
>Os04g0586000 Protein of unknown function DUF581 family protein
Length = 127
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 31/41 (75%), Positives = 35/41 (85%)
Query: 5 GHTHFLDACFLCRKRLAGNRDIFMYRGDTPFCSEECRREQM 45
GH H+LD CF CR+ L GNRDIFMYRGD PFCSEECR+EQ+
Sbjct: 51 GHHHYLDICFRCRRPLGGNRDIFMYRGDMPFCSEECRQEQI 91
>AK060089
Length = 127
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 31/41 (75%), Positives = 35/41 (85%)
Query: 5 GHTHFLDACFLCRKRLAGNRDIFMYRGDTPFCSEECRREQM 45
GH H+LD CF CR+ L GNRDIFMYRGD PFCSEECR+EQ+
Sbjct: 51 GHHHYLDICFRCRRPLGGNRDIFMYRGDMPFCSEECRQEQI 91
>Os02g0686800 Protein of unknown function DUF581 family protein
Length = 146
Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 32/38 (84%), Positives = 33/38 (86%), Gaps = 2/38 (5%)
Query: 8 HFLDACFLCRKRLAGNRDIFMYRGDTPFCSEECRREQM 45
HFLD C LCRK LAG DIFMYRGDTPFCSEECRREQ+
Sbjct: 72 HFLDECTLCRKGLAG--DIFMYRGDTPFCSEECRREQI 107
>Os06g0714800 Protein of unknown function DUF581 family protein
Length = 136
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 26/38 (68%), Positives = 34/38 (89%)
Query: 8 HFLDACFLCRKRLAGNRDIFMYRGDTPFCSEECRREQM 45
HFL++CFLC+ +AG+RDIFMYRGD FCS++CR+EQM
Sbjct: 43 HFLESCFLCKSSIAGDRDIFMYRGDAAFCSDDCRQEQM 80
>Os04g0586100 Protein of unknown function DUF581 family protein
Length = 97
Score = 65.5 bits (158), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 28/38 (73%), Positives = 31/38 (81%)
Query: 8 HFLDACFLCRKRLAGNRDIFMYRGDTPFCSEECRREQM 45
H LDAC LC K+L + DIFMY+GDTPFCSEECR EQM
Sbjct: 22 HALDACALCTKQLTRDSDIFMYKGDTPFCSEECRYEQM 59
>Os04g0586200 Similar to Senescence-associated protein SAG102
Length = 104
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/38 (76%), Positives = 30/38 (78%)
Query: 8 HFLDACFLCRKRLAGNRDIFMYRGDTPFCSEECRREQM 45
H LDAC LC K L + DIFMYRGDTPFCSEECR EQM
Sbjct: 22 HALDACALCTKPLRRDSDIFMYRGDTPFCSEECRYEQM 59
>Os02g0687200 Protein of unknown function DUF581 family protein
Length = 106
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 28/38 (73%), Positives = 30/38 (78%)
Query: 8 HFLDACFLCRKRLAGNRDIFMYRGDTPFCSEECRREQM 45
H +DAC LCRK L N DIFMYRG+TPFCSEECR QM
Sbjct: 27 HAMDACSLCRKPLTRNCDIFMYRGNTPFCSEECRDHQM 64
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.140 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,034,774
Number of extensions: 90666
Number of successful extensions: 174
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 11
Length of query: 92
Length of database: 17,035,801
Length adjustment: 61
Effective length of query: 31
Effective length of database: 13,850,747
Effective search space: 429373157
Effective search space used: 429373157
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)