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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0686800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF581 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.36 (0.0556) R2 : 0.226
β1 : 2.48 (0.251) R2dD : 0.311 R2D : 0.113
β2 : 0.555 (0.132) R2dC : 0.0303 R2C : 0.0228
β3 : -0.275 (0.181) R2dE : 0.00497 R2E : 3.73e-05
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -3.08 (0.655) R2dD*E : 0.0796 R2D*E : -0.144
γ1 : 0.259 (0.116) R2dN8 : 0.0128 R2N8 : -0.021
σ : 0.955
deviance : 420.79
__
_____
C
peak time of C : 4.6
E
wheather : atmosphere
threshold : 1007
memory length : 6994
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
417.19 0.96 3.36 2.48 0.549 -0.27 1.21 -3.03 0.262 4.95 1007 6999 -- --
434.05 0.97 3.46 1.84 0.568 0.361 1.58 -- 0.0886 4.93 1004 19334 -- --
420.79 0.955 3.36 2.48 0.555 -0.275 -- -3.08 0.259 4.6 1007 6994 -- --
436.76 0.98 3.48 1.8 0.548 0.65 -- -- 0.00993 4.41 976.9 40368 -- --
437.2 0.974 3.37 2.51 -- -0.308 -- -3.15 0.274 -- 1007 7028 -- --
436.95 0.98 3.46 1.77 0.564 -- 1.33 -- 0.103 4.94 -- -- -- --
441.2 0.984 3.46 1.77 0.573 -- -- -- 0.0959 4.48 -- -- -- --
452.72 0.995 3.49 1.83 -- 0.755 -- -- 0.0105 -- 976.9 40368 -- --
477.66 1.02 3.57 -- 0.572 -1.11 -- -- -0.378 4.51 1011 47520 -- --
458.77 1 3.47 1.79 -- -- -- -- 0.111 -- -- -- -- --
523.54 1.07 3.51 -- 0.606 -- -- -- -0.101 4.41 -- -- -- --
495.09 1.04 3.58 -- -- -1.13 -- -- -0.373 -- 1011 47520 -- --
543.27 1.09 3.51 -- -- -- -- -- -0.0875 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 405.41 wind 7 14400 < th dose independent rect. 9 2
3 407.26 wind 7 14400 > th dose independent rect. 10 1
7 409.27 radiation 20 1440 > th dose independent rect. 6 1
24 409.73 atmosphere 1000 10 > th dose dependent rect. 15 18
28 410.67 humidity 80 1440 > th dose independent rect. 6 1
29 410.71 wind 5 43200 < th dose dependent rect. 10 1
30 410.83 wind 3 43200 < th dose independent rect. 10 1
35 411.11 humidity 90 720 > th dose independent rect. 14 4
36 411.16 wind 3 43200 > th dose independent rect. 10 1
37 411.45 temperature 25 1440 < th dose dependent rect. 10 1
39 411.63 wind 5 14400 > th dose dependent rect. 11 1
45 412.03 atmosphere 1005 90 > th dose independent rect. 15 18
54 412.51 wind 5 43200 < th dose independent rect. 11 3
59 412.67 wind 1 43200 > th dose dependent rect. 10 1
89 413.43 wind 5 43200 > th dose independent rect. 11 3
90 413.51 radiation 30 1440 < th dose dependent rect. 12 1
96 413.84 atmosphere 1005 90 > th dose independent rect. 17 16
98 413.94 humidity 90 720 > th dose independent rect. 17 1
102 414.09 radiation 1 720 < th dose dependent rect. 10 8
105 414.14 wind 3 43200 > th dose independent rect. 22 1
107 414.17 atmosphere 995 43200 < th dose independent rect. 16 22
110 414.18 radiation 1 720 < th dose dependent rect. 12 6
119 414.32 atmosphere 1010 1440 > th dose dependent rect. 5 1
131 414.58 wind 5 43200 < th dose independent rect. 7 8
138 414.71 wind 3 43200 < th dose independent rect. 22 1
139 414.72 radiation 20 14400 > th dose independent rect. 6 1
152 414.73 atmosphere 1005 720 > th dose independent rect. 21 1
156 414.78 humidity 80 1440 < th dose independent rect. 6 1
164 414.92 atmosphere 995 43200 < th dose dependent sin 18 NA
168 414.95 atmosphere 995 43200 < th dose independent sin 4 NA
171 414.99 radiation 30 4320 > th dose independent rect. 13 1
172 414.99 wind 5 43200 > th dose independent rect. 8 7
174 415.00 wind 1 14400 < th dose independent rect. 20 2
179 415.08 atmosphere 1010 1440 < th dose independent rect. 5 1
183 415.10 radiation 20 1440 < th dose independent rect. 12 1
185 415.11 atmosphere 1010 1440 > th dose independent rect. 4 1
191 415.15 atmosphere 995 43200 > th dose independent rect. 16 22
198 415.19 atmosphere 995 43200 < th dose dependent rect. 2 17
202 415.22 wind 3 43200 < th dose independent rect. 8 3
204 415.24 atmosphere 995 43200 < th dose dependent rect. 10 16
218 415.32 atmosphere 1000 10 > th dose dependent rect. 18 15
234 415.52 wind 3 43200 > th dose dependent rect. 8 6
254 415.63 atmosphere 995 43200 < th dose independent rect. 2 13
255 415.63 atmosphere 995 43200 > th dose independent rect. 24 15
257 415.65 wind 1 14400 > th dose independent rect. 20 2
259 415.65 wind 1 14400 < th dose dependent rect. 20 2
261 415.66 atmosphere 995 43200 > th dose independent sin 5 NA
264 415.67 humidity 90 720 < th dose independent rect. 10 9
269 415.69 radiation 1 720 < th dose dependent rect. 17 1
276 415.71 radiation 10 1440 > th dose independent rect. 10 1
340 416.05 radiation 10 30 > th dose dependent rect. 15 17
341 416.06 atmosphere 1005 720 > th dose independent rect. 18 7
362 416.14 humidity 90 720 > th dose dependent rect. 14 4
370 416.17 atmosphere 1010 1440 > th dose independent rect. 10 2
392 416.27 wind 5 43200 < th dose independent sin 3 NA
400 416.29 atmosphere 1010 1440 < th dose independent rect. 10 2
442 416.46 wind 5 43200 > th dose independent sin 3 NA
457 416.55 atmosphere 1010 1440 < th dose independent rect. 2 10
459 416.55 radiation 30 90 > th dose dependent rect. 15 17
467 416.59 atmosphere 1005 720 < th dose independent rect. 18 7
496 416.74 wind 1 14400 < th dose dependent rect. 18 4
500 416.76 radiation 10 1440 > th dose independent rect. 9 4
523 416.80 atmosphere 1010 1440 > th dose dependent rect. 2 8
528 416.84 radiation 10 1440 < th dose independent rect. 10 1
534 416.85 radiation 10 1440 < th dose dependent rect. 9 3
542 416.87 atmosphere 1000 270 > th dose dependent rect. 23 9
546 416.89 wind 5 43200 > th dose independent rect. 22 18
578 417.01 atmosphere 1010 1440 > th dose independent rect. 2 10
585 417.04 wind 3 1440 > th dose independent rect. 7 1
590 417.05 atmosphere 995 43200 < th dose independent rect. 21 19
641 417.20 temperature 20 1440 > th dose independent rect. 18 1
646 417.20 atmosphere 995 43200 < th dose dependent rect. 14 20
672 417.24 atmosphere 995 43200 < th dose dependent no NA NA
700 417.31 radiation 10 1440 < th dose independent rect. 9 4
759 417.46 atmosphere 1010 4320 > th dose independent rect. 15 1
762 417.47 atmosphere 1010 4320 < th dose independent rect. 15 1
774 417.50 radiation 20 30 > th dose independent rect. 15 17
797 417.55 radiation 10 30 > th dose dependent rect. 15 1
802 417.57 radiation 10 14400 > th dose independent rect. 10 1
804 417.57 wind 3 43200 > th dose dependent rect. 3 12
817 417.60 radiation 20 1440 < th dose independent rect. 23 8
818 417.60 temperature 10 43200 > th dose independent rect. 10 9
833 417.63 humidity 80 90 < th dose independent rect. 14 18
874 417.70 wind 7 14400 > th dose dependent rect. 18 2
885 417.74 humidity 80 90 < th dose independent rect. 18 14
890 417.75 radiation 10 1440 < th dose dependent rect. 10 1
893 417.76 temperature 20 1440 < th dose independent rect. 18 1
904 417.78 atmosphere 995 43200 < th dose independent rect. 15 1
912 417.79 atmosphere 995 43200 < th dose dependent sin 2 NA
931 417.81 temperature 20 1440 > th dose independent rect. 16 3
936 417.81 wind 3 43200 > th dose dependent rect. 22 17
937 417.82 atmosphere 995 43200 > th dose independent rect. 15 1
947 417.83 humidity 90 720 > th dose dependent rect. 11 7
991 417.93 wind 3 43200 > th dose dependent sin 4 NA
992 417.93 atmosphere 995 43200 < th dose dependent rect. 15 2
999 417.94 humidity 80 720 < th dose dependent rect. 19 12