BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0686800 Os02g0686800|AK071055
(146 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G17670.1 | chr4:9833948-9834663 REVERSE LENGTH=160 73 6e-14
AT5G47060.1 | chr5:19116843-19117639 FORWARD LENGTH=178 72 9e-14
AT2G44670.1 | chr2:18425279-18425673 FORWARD LENGTH=94 70 4e-13
AT1G78020.1 | chr1:29338787-29339491 FORWARD LENGTH=163 56 8e-09
AT5G49120.1 | chr5:19908800-19909332 REVERSE LENGTH=151 55 1e-08
AT1G22160.1 | chr1:7823238-7823774 FORWARD LENGTH=148 54 2e-08
AT5G20700.1 | chr5:7006178-7007003 REVERSE LENGTH=249 53 6e-08
AT4G39795.1 | chr4:18466621-18467325 FORWARD LENGTH=127 52 1e-07
AT5G65040.1 | chr5:25977864-25978350 REVERSE LENGTH=114 51 2e-07
AT1G74940.1 | chr1:28146284-28147065 FORWARD LENGTH=223 51 3e-07
AT1G19200.1 | chr1:6625104-6625856 REVERSE LENGTH=216 50 5e-07
>AT4G17670.1 | chr4:9833948-9834663 REVERSE LENGTH=160
Length = 159
Score = 72.8 bits (177), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 43/64 (67%), Gaps = 4/64 (6%)
Query: 72 HFLDECTLCRKGLAG--DIFMYRGDTPFCSEECRREQIEMDRNRHRRKKQQYSPTAQAAA 129
HFLD C LC+K L DIFMYRGDTPFCSEECR EQIE R+ + KKQ S + +A
Sbjct: 75 HFLDSCFLCKKRLGDNRDIFMYRGDTPFCSEECREEQIE--RDEAKEKKQSLSTSVKAMR 132
Query: 130 HHHR 133
+ +
Sbjct: 133 RNEK 136
>AT5G47060.1 | chr5:19116843-19117639 FORWARD LENGTH=178
Length = 177
Score = 72.0 bits (175), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 43/59 (72%), Gaps = 4/59 (6%)
Query: 72 HFLDECTLCRKGLAG--DIFMYRGDTPFCSEECRREQIEMDRNRHRRKKQQYSPTAQAA 128
HFLD C LC+K L DI+MYRGDTPFCSEECR+EQIE R+ + KKQ S + ++A
Sbjct: 96 HFLDSCFLCKKPLGDNRDIYMYRGDTPFCSEECRQEQIE--RDEAKEKKQNLSHSVKSA 152
>AT2G44670.1 | chr2:18425279-18425673 FORWARD LENGTH=94
Length = 93
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 37/53 (69%), Gaps = 2/53 (3%)
Query: 69 EAHHFLDECTLCRK--GLAGDIFMYRGDTPFCSEECRREQIEMDRNRHRRKKQ 119
E HFL+ C+LCRK GL DIFMYRGD FCS ECR EQIE D + R+ K+
Sbjct: 12 EEPHFLESCSLCRKHLGLNSDIFMYRGDKAFCSNECREEQIESDEAKERKWKK 64
>AT1G78020.1 | chr1:29338787-29339491 FORWARD LENGTH=163
Length = 162
Score = 55.8 bits (133), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 66 EVEEAHHFLDECTLCRKGLAG--DIFMYRGDTPFCSEECRREQIEMDRNRHRRK 117
+ +A HFL C LC + L DI+MYRGD FCS ECR+EQ+ D + + K
Sbjct: 82 DFSDAGHFLRSCALCERLLVPGRDIYMYRGDKAFCSSECRQEQMAQDERKEKGK 135
>AT5G49120.1 | chr5:19908800-19909332 REVERSE LENGTH=151
Length = 150
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 17/87 (19%)
Query: 61 CVQDAEVEEAHHFLDECTLCRKGL--AGDIFMYRGDTPFCSEECRREQIEMDRNRHRR-- 116
C QD+ FL+ C LCR+ L A DI+MY+GD FCS ECR +Q+ MD R
Sbjct: 62 CYQDS------GFLEHCFLCRRKLLPAKDIYMYKGDRAFCSVECRSKQMIMDEEESLRRE 115
Query: 117 -------KKQQYSPTAQAAAHHHRSER 136
KK+++ A A + + R R
Sbjct: 116 YCSLMDVKKKKFDSPATAPSRYRRDPR 142
>AT1G22160.1 | chr1:7823238-7823774 FORWARD LENGTH=148
Length = 147
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 73 FLDECTLCRKGLA--GDIFMYRGDTPFCSEECRREQIEMDRNRHRRK 117
FL C+LC++ L DI+MYRGD FCS ECR++QI +D + ++K
Sbjct: 78 FLRSCSLCKRLLVHGRDIYMYRGDRAFCSLECRQQQITVDERKEKKK 124
>AT5G20700.1 | chr5:7006178-7007003 REVERSE LENGTH=249
Length = 248
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 73 FLDECTLCRKGLAG-DIFMYRGDTPFCSEECRREQIEMDRNRHR-RKKQQYSP 123
FL+ C LCRK L G DIF+YRG+ FCS ECR I D + R R K SP
Sbjct: 182 FLNSCYLCRKKLHGQDIFIYRGEKAFCSTECRSSHIANDERKERCRSKFSTSP 234
>AT4G39795.1 | chr4:18466621-18467325 FORWARD LENGTH=127
Length = 126
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 73 FLDECTLCRKGLAG--DIFMYRGDTPFCSEECRREQIEMDRNRHRRK 117
FL C C++GLA DI+MY+GD FCS ECR +Q+E D + R +
Sbjct: 73 FLVNCGFCKRGLAPGRDIYMYKGDAAFCSIECREQQMEHDEGKTRNR 119
>AT5G65040.1 | chr5:25977864-25978350 REVERSE LENGTH=114
Length = 113
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 73 FLDECTLCRKGLAG--DIFMYRGDTPFCSEECRREQIEMDRNR 113
FL C+LC + L DI+MYRG+ FCS ECR +QI++D +
Sbjct: 57 FLKTCSLCNRSLCHHRDIYMYRGNNAFCSLECREKQIKLDEKK 99
>AT1G74940.1 | chr1:28146284-28147065 FORWARD LENGTH=223
Length = 222
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 72 HFLDECTLCRKGLAG-DIFMYRGDTPFCSEECRREQIEMDRNRHRRKKQQYSPTAQAAAH 130
FL C LC+K L G DI+MY+G+ FCS ECR QI M+ R + K Q S A +
Sbjct: 149 EFLSSCCLCKKKLQGKDIYMYKGEMGFCSAECRSVQI-MNDERQEQCKTQVSRNADVLSS 207
Query: 131 HH 132
+
Sbjct: 208 PY 209
>AT1G19200.1 | chr1:6625104-6625856 REVERSE LENGTH=216
Length = 215
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 73 FLDECTLCRKGLAG-DIFMYRGDTPFCSEECRREQIEMDRNRHRRK 117
FL C LC+K L G DI+MY+GD FCS+ECR +I D + + K
Sbjct: 150 FLTSCCLCKKKLQGKDIYMYKGDEGFCSKECRSLKIMEDSLKEQHK 195
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.132 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,389,612
Number of extensions: 138258
Number of successful extensions: 600
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 593
Number of HSP's successfully gapped: 11
Length of query: 146
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 57
Effective length of database: 8,666,545
Effective search space: 493993065
Effective search space used: 493993065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 107 (45.8 bits)