Os04g0586100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF581 family protein.
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Os04g0586100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF581 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 130.65 | 0.537 | 13.9 | 0.719 | 2.08 | -0.687 | -0.363 | 1.53 | 0.125 | 23.3 | 19.96 | 25 | -- | -- |
| 141.27 | 0.554 | 13.8 | 0.975 | 2.1 | -0.755 | 0.133 | -- | 0.172 | 23.4 | 20.28 | 10 | -- | -- |
| 131.16 | 0.533 | 13.9 | 0.738 | 2.08 | -0.695 | -- | 1.43 | 0.131 | 23.3 | 20 | 25 | -- | -- |
| 140.97 | 0.553 | 13.8 | 0.984 | 2.11 | -0.744 | -- | -- | 0.184 | 23.4 | 20.01 | 31 | -- | -- |
| 366.64 | 0.892 | 13.8 | 0.563 | -- | -0.774 | -- | 1.49 | 0.0121 | -- | 21.3 | 768 | -- | -- |
| 164.83 | 0.602 | 13.8 | 1.19 | 1.95 | -- | 0.167 | -- | 0.32 | 23.2 | -- | -- | -- | -- |
| 164.95 | 0.601 | 13.8 | 1.19 | 1.95 | -- | -- | -- | 0.32 | 23.2 | -- | -- | -- | -- |
| 375.24 | 0.902 | 13.8 | 0.909 | -- | -0.872 | -- | -- | 0.0851 | -- | 21.3 | 792 | -- | -- |
| 162.36 | 0.593 | 13.9 | -- | 2.05 | -1.22 | -- | -- | 0.0488 | 23.4 | 19.5 | 188 | -- | -- |
| 402.05 | 0.937 | 13.7 | 1.23 | -- | -- | -- | -- | 0.337 | -- | -- | -- | -- | -- |
| 202.04 | 0.665 | 13.8 | -- | 1.96 | -- | -- | -- | 0.188 | 23.3 | -- | -- | -- | -- |
| 382.38 | 0.911 | 13.8 | -- | -- | -1.59 | -- | -- | -0.0385 | -- | 19.05 | 2302 | -- | -- |
| 442.21 | 0.982 | 13.8 | -- | -- | -- | -- | -- | 0.2 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 119.84 | temperature | 25 | 90 | < th | dose dependent | rect. | 12 | 19 |
| 2 | 120.32 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 18 |
| 5 | 120.57 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 21 | 121.42 | temperature | 25 | 90 | < th | dose dependent | rect. | 12 | 21 |
| 25 | 121.62 | temperature | 20 | 90 | > th | dose independent | rect. | 18 | 11 |
| 31 | 121.84 | temperature | 20 | 10 | < th | dose independent | rect. | 13 | 21 |
| 45 | 123.18 | temperature | 20 | 10 | < th | dose independent | rect. | 13 | 17 |
| 104 | 125.23 | temperature | 20 | 30 | > th | dose independent | rect. | 7 | 22 |
| 180 | 127.25 | temperature | 20 | 90 | < th | dose independent | sin | 10 | NA |
| 186 | 127.39 | wind | 1 | 43200 | > th | dose independent | rect. | 13 | 12 |
| 193 | 127.42 | temperature | 15 | 90 | > th | dose dependent | rect. | 18 | 10 |
| 194 | 127.45 | temperature | 20 | 10 | < th | dose independent | sin | 9 | NA |
| 199 | 127.54 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 10 |
| 207 | 127.67 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 11 |
| 234 | 128.16 | temperature | 20 | 90 | > th | dose independent | rect. | 18 | 18 |
| 236 | 128.20 | temperature | 20 | 90 | < th | dose independent | rect. | 23 | 6 |
| 244 | 128.30 | temperature | 20 | 10 | < th | dose independent | rect. | 22 | 21 |
| 247 | 128.33 | temperature | 25 | 90 | < th | dose dependent | sin | 11 | NA |
| 256 | 128.40 | wind | 1 | 43200 | < th | dose independent | rect. | 13 | 13 |
| 265 | 128.46 | temperature | 20 | 30 | > th | dose independent | rect. | 9 | 20 |
| 273 | 128.58 | radiation | 10 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 296 | 128.70 | temperature | 20 | 10 | < th | dose independent | rect. | 22 | 12 |
| 301 | 128.75 | temperature | 25 | 10 | < th | dose dependent | sin | 10 | NA |
| 317 | 128.91 | temperature | 15 | 10 | > th | dose dependent | rect. | 18 | 11 |
| 328 | 129.08 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 14 |
| 345 | 129.14 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 8 |
| 392 | 129.55 | temperature | 20 | 90 | < th | dose independent | rect. | 23 | 8 |
| 395 | 129.57 | temperature | 20 | 30 | > th | dose independent | rect. | 9 | 23 |
| 407 | 129.64 | wind | 1 | 43200 | < th | dose dependent | rect. | 9 | 16 |
| 421 | 129.72 | temperature | 20 | 30 | > th | dose independent | rect. | 18 | 20 |
| 428 | 129.77 | temperature | 20 | 10 | < th | dose independent | rect. | 22 | 8 |
| 432 | 129.80 | temperature | 20 | 10 | < th | dose independent | rect. | 20 | 23 |
| 487 | 130.13 | wind | 1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 490 | 130.15 | temperature | 20 | 90 | > th | dose independent | sin | 13 | NA |
| 491 | 130.15 | wind | 3 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 545 | 130.46 | radiation | 20 | 14400 | < th | dose independent | rect. | 19 | 11 |
| 555 | 130.56 | wind | 1 | 43200 | > th | dose independent | sin | 17 | NA |
| 556 | 130.56 | temperature | 20 | 90 | > th | dose independent | rect. | 17 | 23 |
| 568 | 130.64 | humidity | 80 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 571 | 130.65 | temperature | 20 | 10 | < th | dose independent | rect. | 20 | 14 |
| 575 | 130.70 | temperature | 20 | 30 | < th | dose independent | rect. | 7 | 23 |
| 579 | 130.71 | temperature | 20 | 30 | < th | dose independent | rect. | 9 | 23 |
| 580 | 130.72 | temperature | 20 | 30 | < th | dose independent | no | NA | NA |
| 589 | 130.74 | temperature | 20 | 30 | < th | dose independent | rect. | 17 | 23 |
| 591 | 130.75 | wind | 1 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 606 | 130.79 | temperature | 20 | 30 | < th | dose independent | rect. | 15 | 23 |
| 624 | 130.88 | temperature | 20 | 30 | < th | dose independent | rect. | 1 | 23 |
| 625 | 130.88 | temperature | 20 | 30 | < th | dose independent | rect. | 3 | 23 |
| 629 | 130.90 | temperature | 20 | 30 | > th | dose independent | no | NA | NA |
| 631 | 130.91 | wind | 3 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 635 | 130.96 | wind | 1 | 43200 | < th | dose dependent | sin | 19 | NA |
| 637 | 130.98 | temperature | 20 | 30 | < th | dose independent | rect. | 5 | 23 |
| 644 | 131.00 | temperature | 20 | 90 | > th | dose independent | rect. | 13 | 23 |
| 669 | 131.15 | wind | 1 | 43200 | < th | dose independent | sin | 17 | NA |
| 704 | 131.40 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 8 |
| 709 | 131.42 | temperature | 20 | 30 | > th | dose independent | rect. | 11 | 23 |
| 724 | 131.50 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 21 |
| 737 | 131.57 | wind | 3 | 43200 | < th | dose independent | rect. | 14 | 3 |
| 746 | 131.66 | humidity | 80 | 43200 | < th | dose independent | rect. | 3 | 9 |
| 788 | 131.82 | temperature | 20 | 10 | < th | dose independent | rect. | 20 | 10 |
| 806 | 131.93 | wind | 5 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 846 | 132.13 | temperature | 25 | 10 | < th | dose dependent | rect. | 22 | 9 |
| 853 | 132.16 | temperature | 25 | 10 | < th | dose dependent | rect. | 20 | 11 |
| 862 | 132.21 | radiation | 40 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 877 | 132.28 | radiation | 40 | 43200 | < th | dose dependent | rect. | 22 | 7 |
| 934 | 132.55 | wind | 3 | 43200 | < th | dose independent | rect. | 13 | 7 |
| 949 | 132.59 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 1 |