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Os04g0585700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF581 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12 (0.0441) R2 : 0.509
β1 : -0.0909 (0.164) R2dD : 0.000365 R2D : -0.0404
β2 : 1.62 (0.116) R2dC : 0.256 R2C : 0.282
β3 : 0.82 (0.187) R2dE : 0.0267 R2E : 0.0294
β4 : 3.99 (0.439) R2dD*C : 0.102 R2D*C : -0.0244
β5 : -8.52 (0.835) R2dD*E : 0.14 R2D*E : -0.0208
γ1 : -0.697 (0.0944) R2dN8 : 0.0807 R2N8 : 0.0371
σ : 0.824
deviance : 307.51
__
_____
C
peak time of C : 22.1
E
wheather : humidity
threshold : 80.15
memory length : 874
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 22.7
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
307.51 0.824 12 -0.0909 1.62 0.82 3.99 -8.52 -0.697 22.1 80.15 874 22.7 --
345.03 0.872 11.9 0.257 0.198 -1.81 3.8 -- -0.528 2.18 215.1 6700 21 --
332.62 0.849 12 -0.072 1.88 0.861 -- -8.46 -0.621 22.1 80.97 556 23.4 --
397.7 0.935 12 0.138 1.97 0.239 -- -- -0.545 21.5 80.97 556 23.4 --
489.24 1.04 11.9 0.275 -- -1.14 -- -4.27 -0.57 -- 79 956 23.2 --
380.04 0.914 12 0.229 1.82 -- 2.38 -- -0.552 21.9 -- -- -- --
399.06 0.935 12 0.147 1.85 -- -- -- -0.55 21.4 -- -- -- --
400.33 0.932 11.9 0.154 -- -1.8 -- -- -0.495 -- 147.9 13344 23.7 --
398.2 0.934 12 -- 1.97 0.244 -- -- -0.561 21.5 80.97 556 23.4 --
598.77 1.14 11.9 0.158 -- -- -- -- -0.557 -- -- -- -- --
399.63 0.935 12 -- 1.85 -- -- -- -0.567 21.4 -- -- -- --
399.77 0.931 11.9 -- -- -1.83 -- -- -0.607 -- 137.7 17725 0.29 --
599.43 1.14 11.9 -- -- -- -- -- -0.574 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 314.80 humidity 80.0 720 < th dose independent rect. 6 7
16 316.31 humidity 80.0 720 < th dose independent sin 4 NA
39 319.20 radiation 1.0 30 > th dose independent rect. 7 23
41 319.45 temperature 15.0 270 > th dose dependent rect. 1 6
43 319.73 radiation 1.0 90 > th dose independent rect. 7 11
89 322.24 temperature 20.0 270 > th dose independent rect. 1 6
92 322.49 humidity 80.0 270 > th dose independent rect. 23 15
99 323.01 humidity 80.0 720 < th dose independent rect. 9 1
101 323.15 humidity 70.0 90 > th dose independent rect. 13 18
105 323.54 radiation 1.0 720 < th dose independent rect. 11 16
107 323.62 radiation 20.0 10 < th dose dependent rect. 17 23
109 323.68 humidity 60.0 90 > th dose dependent rect. 12 23
123 323.96 radiation 1.0 720 < th dose independent rect. 21 18
127 324.22 humidity 80.0 270 > th dose independent sin 6 NA
140 324.76 radiation 20.0 90 < th dose dependent rect. 12 22
143 324.84 humidity 80.0 10 > th dose independent sin 5 NA
145 324.84 humidity 60.0 30 > th dose dependent rect. 13 21
161 325.21 humidity 60.0 90 > th dose dependent sin 6 NA
167 325.44 radiation 1.0 720 < th dose dependent rect. 11 16
173 325.57 radiation 10.0 90 < th dose independent rect. 13 21
178 325.68 radiation 10.0 10 < th dose independent sin 4 NA
192 325.88 radiation 1.0 720 < th dose dependent rect. 21 20
196 325.93 humidity 50.0 90 > th dose dependent rect. 13 18
198 325.94 radiation 20.0 10 < th dose dependent sin 4 NA
199 325.96 radiation 1.0 720 < th dose independent sin 17 NA
200 325.99 radiation 20.0 10 < th dose dependent rect. 19 23
201 326.00 radiation 30.0 720 < th dose independent rect. 17 16
203 326.09 humidity 80.0 10 > th dose independent rect. 2 9
207 326.18 atmosphere 1000.0 90 > th dose independent rect. 7 10
219 326.33 humidity 90.0 720 < th dose dependent rect. 3 10
227 326.44 radiation 10.0 10 < th dose independent rect. 17 21
242 326.58 humidity 70.0 270 > th dose dependent rect. 23 15
246 326.65 wind 3.0 30 < th dose independent sin 7 NA
247 326.65 radiation 1.0 720 > th dose independent sin 18 NA
255 326.71 wind 5.0 270 < th dose independent sin 11 NA
256 326.73 humidity 80.0 270 > th dose independent rect. 23 11
259 326.78 wind 5.0 30 < th dose dependent sin 7 NA
266 326.86 humidity 80.0 90 > th dose independent rect. 1 10
273 326.95 radiation 1.0 720 > th dose independent rect. 13 6
293 327.05 radiation 1.0 720 < th dose independent rect. 21 10
300 327.10 radiation 20.0 10 < th dose dependent rect. 5 23
320 327.31 radiation 30.0 90 < th dose dependent rect. 13 18
321 327.32 radiation 20.0 30 < th dose dependent rect. 1 23
334 327.42 radiation 20.0 10 < th dose dependent rect. 11 23
349 327.53 radiation 1.0 720 > th dose independent rect. 11 8
361 327.55 humidity 70.0 270 > th dose dependent rect. 23 11
365 327.58 radiation 1.0 720 < th dose dependent sin 17 NA
367 327.60 humidity 70.0 90 > th dose independent rect. 15 16
369 327.62 radiation 10.0 90 < th dose independent rect. 15 19
387 327.69 radiation 20.0 10 < th dose dependent rect. 13 23
391 327.72 radiation 20.0 10 < th dose dependent rect. 15 23
398 327.78 radiation 20.0 10 < th dose dependent no NA NA
411 327.87 radiation 40.0 720 < th dose independent sin 10 NA
421 327.93 humidity 70.0 270 > th dose independent rect. 10 21
445 328.11 radiation 30.0 10 < th dose dependent rect. 12 21
448 328.12 radiation 20.0 10 < th dose dependent rect. 17 21
455 328.15 humidity 90.0 720 < th dose dependent sin 5 NA
456 328.15 atmosphere 995.0 90 > th dose dependent rect. 7 10
460 328.19 temperature 30.0 270 < th dose independent rect. 13 16
500 328.53 radiation 1.0 720 < th dose independent rect. 11 12
501 328.53 radiation 40.0 720 < th dose dependent rect. 17 17
507 328.56 humidity 70.0 90 > th dose dependent rect. 1 10
514 328.59 radiation 1.0 720 < th dose dependent rect. 11 12
527 328.65 radiation 1.0 720 < th dose independent rect. 13 10
544 328.71 humidity 70.0 720 > th dose independent rect. 19 16
554 328.78 radiation 20.0 10 < th dose independent rect. 2 8
559 328.84 radiation 40.0 720 < th dose dependent sin 10 NA
560 328.84 humidity 50.0 90 > th dose dependent rect. 15 16
564 328.88 humidity 60.0 14400 > th dose independent rect. 21 10
566 328.88 radiation 40.0 720 < th dose dependent rect. 19 15
569 328.89 radiation 1.0 720 > th dose independent rect. 11 21
572 328.92 radiation 1.0 720 < th dose dependent rect. 13 10
599 328.95 humidity 50.0 270 > th dose dependent rect. 10 21
613 329.05 humidity 70.0 90 > th dose independent rect. 17 14
621 329.07 wind 5.0 270 < th dose dependent rect. 22 8
633 329.12 radiation 20.0 90 < th dose independent rect. 17 14
655 329.20 temperature 30.0 270 < th dose independent rect. 10 23
661 329.22 humidity 50.0 90 > th dose dependent rect. 17 14
683 329.34 radiation 1.0 720 > th dose dependent rect. 5 6
688 329.36 atmosphere 995.0 270 > th dose dependent sin 21 NA
711 329.40 atmosphere 995.0 90 > th dose dependent sin 19 NA
713 329.41 radiation 10.0 10 < th dose independent rect. 17 19
720 329.44 temperature 30.0 90 < th dose independent rect. 7 10
759 329.60 atmosphere 995.0 720 > th dose dependent rect. 7 8
772 329.67 radiation 1.0 720 > th dose independent rect. 7 12
815 329.77 radiation 1.0 720 > th dose dependent sin 8 NA
853 329.91 radiation 10.0 270 < th dose independent rect. 23 9
856 329.91 atmosphere 995.0 270 > th dose dependent rect. 7 15
877 330.01 radiation 10.0 10 < th dose independent rect. 2 12
881 330.03 radiation 1.0 720 < th dose independent rect. 2 21
884 330.03 radiation 1.0 720 < th dose dependent rect. 2 21
890 330.05 radiation 1.0 720 < th dose independent rect. 5 18
898 330.09 radiation 40.0 90 < th dose independent sin 6 NA
905 330.12 radiation 20.0 90 < th dose dependent rect. 15 18
909 330.14 wind 1.0 90 > th dose independent rect. 7 18
913 330.15 humidity 70.0 720 > th dose independent rect. 19 18
930 330.20 humidity 70.0 270 > th dose dependent rect. 23 8
945 330.26 radiation 40.0 90 < th dose dependent sin 5 NA
950 330.28 radiation 10.0 90 < th dose independent rect. 1 9
960 330.31 atmosphere 1000.0 90 > th dose independent rect. 17 14
979 330.36 precipitation 0.1 90 < th dose independent rect. 7 10
980 330.36 precipitation 0.1 90 < th dose dependent rect. 7 10
981 330.36 temperature 10.0 720 > th dose dependent rect. 19 12
997 330.39 radiation 10.0 720 < th dose dependent rect. 21 10