BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0585700 Os04g0585700|AK061584
(150 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0585700 Protein of unknown function DUF581 family protein 180 3e-46
Os02g0686700 Protein of unknown function DUF581 family protein 88 2e-18
Os04g0586000 Protein of unknown function DUF581 family protein 75 2e-14
AK060089 75 2e-14
Os02g0686900 69 2e-12
Os02g0686800 Protein of unknown function DUF581 family protein 65 1e-11
Os06g0714800 Protein of unknown function DUF581 family protein 65 2e-11
Os02g0687200 Protein of unknown function DUF581 family protein 65 2e-11
>Os04g0585700 Protein of unknown function DUF581 family protein
Length = 150
Score = 180 bits (457), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 94/134 (70%), Positives = 94/134 (70%)
Query: 17 ITLXXXXXXXXXXXWTRLVSSGVEDVLVVXXXXXXXXXXXXXXXXXLLPYGHFLEACFLC 76
ITL WTRLVSSGVEDVLVV LLPYGHFLEACFLC
Sbjct: 17 ITLAIGGGGASAAAWTRLVSSGVEDVLVVGGAGGWRGGGGGDGAGGLLPYGHFLEACFLC 76
Query: 77 RKPLASNRDIYMYRGDIPFCSEECRREQIXXXXXXXXXXXXNISKKVAPRTPDPREVEST 136
RKPLASNRDIYMYRGDIPFCSEECRREQI NISKKVAPRTPDPREVEST
Sbjct: 77 RKPLASNRDIYMYRGDIPFCSEECRREQIEMDDEMERKEKKNISKKVAPRTPDPREVEST 136
Query: 137 PRPPKARAGSILAG 150
PRPPKARAGSILAG
Sbjct: 137 PRPPKARAGSILAG 150
>Os02g0686700 Protein of unknown function DUF581 family protein
Length = 92
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Query: 66 YGHFLEACFLCRKPLASNRDIYMYRGDIPFCSEECRREQIXXXXXXXXXXXXNISKKVAP 125
+ HFL+ACFLCRK LA NRDI+MYRGD PFCSEECRREQ+ + K+
Sbjct: 6 HTHFLDACFLCRKRLAGNRDIFMYRGDTPFCSEECRREQMEADAAAERTEKARRAGKLTR 65
Query: 126 RTPDP-REVES-TPRPPKARAGSILA 149
P REVE R RAGSILA
Sbjct: 66 GAPSSRREVEGPQERGNSVRAGSILA 91
>Os04g0586000 Protein of unknown function DUF581 family protein
Length = 127
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 37/43 (86%)
Query: 63 LLPYGHFLEACFLCRKPLASNRDIYMYRGDIPFCSEECRREQI 105
LL + H+L+ CF CR+PL NRDI+MYRGD+PFCSEECR+EQI
Sbjct: 49 LLGHHHYLDICFRCRRPLGGNRDIFMYRGDMPFCSEECRQEQI 91
>AK060089
Length = 127
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 37/43 (86%)
Query: 63 LLPYGHFLEACFLCRKPLASNRDIYMYRGDIPFCSEECRREQI 105
LL + H+L+ CF CR+PL NRDI+MYRGD+PFCSEECR+EQI
Sbjct: 49 LLGHHHYLDICFRCRRPLGGNRDIFMYRGDMPFCSEECRQEQI 91
>Os02g0686900
Length = 125
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 27/40 (67%), Positives = 34/40 (85%)
Query: 66 YGHFLEACFLCRKPLASNRDIYMYRGDIPFCSEECRREQI 105
+ H+L+ACFLC + LA N+DI+MYRGD PFCSEECR+ QI
Sbjct: 46 HHHYLDACFLCGRMLAGNKDIFMYRGDTPFCSEECRQRQI 85
>Os02g0686800 Protein of unknown function DUF581 family protein
Length = 146
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/38 (76%), Positives = 31/38 (81%), Gaps = 2/38 (5%)
Query: 68 HFLEACFLCRKPLASNRDIYMYRGDIPFCSEECRREQI 105
HFL+ C LCRK LA DI+MYRGD PFCSEECRREQI
Sbjct: 72 HFLDECTLCRKGLAG--DIFMYRGDTPFCSEECRREQI 107
>Os06g0714800 Protein of unknown function DUF581 family protein
Length = 136
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 33/38 (86%)
Query: 68 HFLEACFLCRKPLASNRDIYMYRGDIPFCSEECRREQI 105
HFLE+CFLC+ +A +RDI+MYRGD FCS++CR+EQ+
Sbjct: 43 HFLESCFLCKSSIAGDRDIFMYRGDAAFCSDDCRQEQM 80
>Os02g0687200 Protein of unknown function DUF581 family protein
Length = 106
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 35/58 (60%)
Query: 67 GHFLEACFLCRKPLASNRDIYMYRGDIPFCSEECRREQIXXXXXXXXXXXXNISKKVA 124
GH ++AC LCRKPL N DI+MYRG+ PFCSEECR Q+ N ++ A
Sbjct: 26 GHAMDACSLCRKPLTRNCDIFMYRGNTPFCSEECRDHQMEMDEAAVRVSATNARERAA 83
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.140 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,724,079
Number of extensions: 115197
Number of successful extensions: 449
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 450
Number of HSP's successfully gapped: 8
Length of query: 150
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 58
Effective length of database: 12,232,113
Effective search space: 709462554
Effective search space used: 709462554
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 151 (62.8 bits)