BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0649800 Os02g0649800|AK066861
(138 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0649800 Similar to Cytochrome B5 homolog (Fragment) 284 1e-77
Os10g0518200 Similar to Cytochome b5 (Fragment) 163 3e-41
Os05g0108800 Cytochrome b5 141 2e-34
Os01g0971500 Similar to Cytochrome b5 131 1e-31
D10954 99 1e-21
Os12g0223300 Similar to Outer membrane cytochrome b(5) (Fra... 94 4e-20
Os08g0386300 Cytochrome b5 domain containing protein 75 1e-14
Os08g0468700 Similar to Nitrate reductase [NADH] 1 (EC 1.7.... 64 4e-11
Os08g0468100 Nitrate reductase [NADH] 1 (EC 1.7.1.1) (NR1) 64 4e-11
Os09g0338500 Similar to Desaturase/cytochrome b5 protein 63 7e-11
>Os02g0649800 Similar to Cytochrome B5 homolog (Fragment)
Length = 138
Score = 284 bits (727), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 138/138 (100%), Positives = 138/138 (100%)
Query: 1 MAGGKAVYSFQEVSKHNDRKDCWLIIAGKVYDVSPFMEEHPGGDEVLLACTGKDATADFN 60
MAGGKAVYSFQEVSKHNDRKDCWLIIAGKVYDVSPFMEEHPGGDEVLLACTGKDATADFN
Sbjct: 1 MAGGKAVYSFQEVSKHNDRKDCWLIIAGKVYDVSPFMEEHPGGDEVLLACTGKDATADFN 60
Query: 61 DIGHTATAKELMPQYCIGEVDASTVPAKPAYRVVSEDASAKPDAASQGAWLTALQLAVPV 120
DIGHTATAKELMPQYCIGEVDASTVPAKPAYRVVSEDASAKPDAASQGAWLTALQLAVPV
Sbjct: 61 DIGHTATAKELMPQYCIGEVDASTVPAKPAYRVVSEDASAKPDAASQGAWLTALQLAVPV 120
Query: 121 VLLGLAYALQDFAKTKTA 138
VLLGLAYALQDFAKTKTA
Sbjct: 121 VLLGLAYALQDFAKTKTA 138
>Os10g0518200 Similar to Cytochome b5 (Fragment)
Length = 134
Score = 163 bits (413), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 76/136 (55%), Positives = 100/136 (73%), Gaps = 2/136 (1%)
Query: 1 MAGGKAVYSFQEVSKHNDRKDCWLIIAGKVYDVSPFMEEHPGGDEVLLACTGKDATADFN 60
MAG K V+ F+EV+ HN KDCWLIIAGKVYDV+ FM+EHPGGDEVLLA TGKDAT DF
Sbjct: 1 MAGEKKVFGFEEVAGHNVTKDCWLIIAGKVYDVTSFMDEHPGGDEVLLAVTGKDATNDFE 60
Query: 61 DIGHTATAKELMPQYCIGEVDASTVPAKPAYRVVSEDASAKPDAASQGAWLTALQLAVPV 120
DIGH+ +A+E+M +Y IGE+DAST+P K + V + A PD + LQ VP+
Sbjct: 61 DIGHSESAREMMEKYLIGEIDASTIPVKRTH-VTPQQAPGNPDKGDD-MLIKILQFLVPI 118
Query: 121 VLLGLAYALQDFAKTK 136
++LGLA+A++ + K++
Sbjct: 119 LILGLAFAIRQYTKSE 134
>Os05g0108800 Cytochrome b5
Length = 137
Score = 141 bits (355), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 65/135 (48%), Positives = 95/135 (70%), Gaps = 2/135 (1%)
Query: 4 GKAVYSFQEVSKHNDRKDCWLIIAGKVYDVSPFMEEHPGGDEVLLACTGKDATADFNDIG 63
K VY+ +EV+KHN + DCWLII GKVY+VS F+E+HPGGD+VLL+ TGKDAT DF D+G
Sbjct: 5 NKKVYTLEEVAKHNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDFEDVG 64
Query: 64 HTATAKELMPQYCIGEVDASTVPAKPAYRVVSEDASAKPDAASQGAWLTALQLAVPVVLL 123
H+ TA+ +M +Y +G++D ST+PA+ Y V + D + + LQ VP+ +L
Sbjct: 65 HSTTARAMMDEYYVGDIDTSTIPARTKY-VPPKQPHYNQDKTPE-FIIKILQFLVPLAIL 122
Query: 124 GLAYALQDFAKTKTA 138
GLA A++ + K+++A
Sbjct: 123 GLAVAIRIYTKSESA 137
>Os01g0971500 Similar to Cytochrome b5
Length = 135
Score = 131 bits (330), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 95/141 (67%), Gaps = 9/141 (6%)
Query: 1 MAGGKAVYSFQEVSKHNDRKDCWLIIAGKVYDVSPFMEEHPGGDEVLLACTGKDATADFN 60
M+ K V + +EVSKHN + DCWLII GKVY+V+ F+E+HPGGD+VLL+ T KDAT DF
Sbjct: 1 MSNNK-VLTLEEVSKHNTKDDCWLIIGGKVYNVTKFLEDHPGGDDVLLSSTAKDATDDFE 59
Query: 61 DIGHTATAKELMPQYCIGEVDASTVPAKPAYRVVSE---DASAKPDAASQGAWLTALQLA 117
D+GH+ TA+ +M +Y +G++DA+T+P K Y + + P+ + LQ
Sbjct: 60 DVGHSTTARAMMDEYYVGDIDATTIPTKVKYTPPKQPHYNQDKTPEFI-----IKILQFL 114
Query: 118 VPVVLLGLAYALQDFAKTKTA 138
VP+ +LGLA A++ + K+++A
Sbjct: 115 VPLAILGLAVAVRIYTKSESA 135
>D10954
Length = 65
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 45/62 (72%), Positives = 51/62 (82%)
Query: 1 MAGGKAVYSFQEVSKHNDRKDCWLIIAGKVYDVSPFMEEHPGGDEVLLACTGKDATADFN 60
MAG K V+ F+EV+ HN +DCWLIIAGKVYD + FM+EHPGGDEVLLA TGKDAT DF
Sbjct: 1 MAGEKKVFGFEEVAGHNVXRDCWLIIAGKVYDXTSFMDEHPGGDEVLLAVTGKDATNDFX 60
Query: 61 DI 62
DI
Sbjct: 61 DI 62
>Os12g0223300 Similar to Outer membrane cytochrome b(5) (Fragment)
Length = 150
Score = 93.6 bits (231), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 73/133 (54%), Gaps = 6/133 (4%)
Query: 2 AGGKAVYSFQEVSKHNDRKDCWLIIAGKVYDVSPFMEEHPGGDEVLL-ACTGKDATADFN 60
A K ++S +V H RKDCW++I GKVYDV+ F+E+HPGG++VLL A DAT F
Sbjct: 7 ASAKKLFSASDVVGHASRKDCWVVIHGKVYDVTKFLEDHPGGEDVLLHASASGDATEAFE 66
Query: 61 DIGHTATAKELMPQYCIGEVDASTVP-AKPAYRVVSEDASAK----PDAASQGAWLTALQ 115
D+GH+ +A +M Y IG + P A A + D P A T L
Sbjct: 67 DVGHSTSAISMMNNYLIGSIKDYVPPSASEATTIGGNDVPPNFRRMPQKKGPPAPNTFLD 126
Query: 116 LAVPVVLLGLAYA 128
+P+ +LGLA+A
Sbjct: 127 FLLPLFVLGLAFA 139
>Os08g0386300 Cytochrome b5 domain containing protein
Length = 119
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 8 YSFQEVSKHNDRKDCWLIIAGKVYDVSPFMEEHPGGDEVLLACTGKDATADFNDIGHTAT 67
Y+ +E+S HN R DCW+II KVYDV+ ++EEHPGGD +L G D+T F H
Sbjct: 45 YTKEEISAHNTRTDCWVIIKDKVYDVTSYVEEHPGGD-AILNNAGGDSTEGFFGPQHGFR 103
Query: 68 AKELMPQYCIGEVDAS 83
E++ +CIGE+ S
Sbjct: 104 VFEIIEDFCIGELKHS 119
>Os08g0468700 Similar to Nitrate reductase [NADH] 1 (EC 1.7.1.1) (NR1)
Length = 916
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 8 YSFQEVSKHNDRKDCWLIIAGKVYDVSPFMEEHPGGDEVLLACTGKDATADFNDIGHTAT 67
++ EV KH+ + W+++ G VYD + F+++HPGG + +L G D T +F+ I H+
Sbjct: 544 FTMSEVRKHSSQDSAWIVVHGHVYDCTAFLKDHPGGADSILINAGTDCTEEFDAI-HSDK 602
Query: 68 AKELMPQYCIGEV 80
AK L+ Y IGE+
Sbjct: 603 AKALLDTYRIGEL 615
>Os08g0468100 Nitrate reductase [NADH] 1 (EC 1.7.1.1) (NR1)
Length = 916
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 8 YSFQEVSKHNDRKDCWLIIAGKVYDVSPFMEEHPGGDEVLLACTGKDATADFNDIGHTAT 67
++ EV KH+ + W+++ G VYD + F+++HPGG + +L G D T +F+ I H+
Sbjct: 544 FTMSEVRKHSSQDSAWIVVHGHVYDCTAFLKDHPGGADSILINAGTDCTEEFDAI-HSDK 602
Query: 68 AKELMPQYCIGEV 80
AK L+ Y IGE+
Sbjct: 603 AKALLDTYRIGEL 615
>Os09g0338500 Similar to Desaturase/cytochrome b5 protein
Length = 466
Score = 62.8 bits (151), Expect = 7e-11, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 2 AGGKAVYSFQEVSKHNDRKDCWLIIAGKVYDVSPFMEEHPGGDEVLLACTGKDATADFND 61
G + S +E+ H R D W+ I+G VYDV+ ++ HPGGD LL G+DAT F
Sbjct: 22 GAGVRMISSEELRAHASRDDLWISISGDVYDVTAWVPHHPGGDIPLLTLAGQDATDAFAA 81
Query: 62 IGHTATAKELMPQYCIGEVDASTV-PAKPAYR 92
H +A+ L+ ++ +G ++ TV PA +R
Sbjct: 82 Y-HPPSARPLLGRFLVGRLEDYTVSPASADFR 112
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.131 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,909,221
Number of extensions: 190913
Number of successful extensions: 463
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 458
Number of HSP's successfully gapped: 10
Length of query: 138
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 48
Effective length of database: 12,336,541
Effective search space: 592153968
Effective search space used: 592153968
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 150 (62.4 bits)