BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0597700 Os02g0597700|Os02g0597700
(168 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0597700 Ubiquitin domain containing protein 279 9e-76
Os01g0907200 Ubiquitin domain containing protein 162 8e-41
AK058550 162 8e-41
Os04g0483000 Ubiquitin domain containing protein 123 7e-29
Os01g0831200 Ubiquitin domain containing protein 112 1e-25
Os09g0524800 Ubiquitin domain containing protein 94 3e-20
Os08g0546100 Ubiquitin domain containing protein 92 2e-19
Os04g0484100 88 3e-18
Os06g0126500 Ubiquitin domain containing protein 86 1e-17
Os04g0619900 Ubiquitin domain containing protein 86 1e-17
>Os02g0597700 Ubiquitin domain containing protein
Length = 168
Score = 279 bits (713), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 147/168 (87%), Positives = 147/168 (87%)
Query: 1 MIKLRYSKRLFKRSCSSSKATACVXXXXXXXXXXXXXXXXXXXXXEIGWEVRPGGMLVQK 60
MIKLRYSKRLFKRSCSSSKATACV EIGWEVRPGGMLVQK
Sbjct: 1 MIKLRYSKRLFKRSCSSSKATACVGGGGGGHGNAVAAGGGGGGAGEIGWEVRPGGMLVQK 60
Query: 61 REGRGGEEVILVRVSTGFAWHDVSIAATSTFGELKVRLSMVTGLEPREQRLLFRGKERED 120
REGRGGEEVILVRVSTGFAWHDVSIAATSTFGELKVRLSMVTGLEPREQRLLFRGKERED
Sbjct: 61 REGRGGEEVILVRVSTGFAWHDVSIAATSTFGELKVRLSMVTGLEPREQRLLFRGKERED 120
Query: 121 TDHLHMVGVRDKDKVLLLEDPALKDMKVRAALAAARVMQSPCQPFIQV 168
TDHLHMVGVRDKDKVLLLEDPALKDMKVRAALAAARVMQSPCQPFIQV
Sbjct: 121 TDHLHMVGVRDKDKVLLLEDPALKDMKVRAALAAARVMQSPCQPFIQV 168
>Os01g0907200 Ubiquitin domain containing protein
Length = 172
Score = 162 bits (411), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 82/136 (60%), Positives = 102/136 (75%), Gaps = 14/136 (10%)
Query: 46 EIGWEVRPGGMLVQKR-------------EGRGGEEVILVRVSTGFAWHDVSIAATSTFG 92
+I WEVRPGGMLVQKR G + I+VRVSTG+ WHDVSI +T+TFG
Sbjct: 38 KIEWEVRPGGMLVQKRRAPEEQDDGSSSMSAHSGADAIVVRVSTGWQWHDVSIDSTATFG 97
Query: 93 ELKVRLSMVTGLEPREQRLLFRGKEREDTDHLHMVGVRDKDKVLLLEDPALKDMKVRAAL 152
+LKV LS+VTGL PR+QRLL++GKER+D DHLHMVGV+DKDKVLLLEDPA+K+ K+R+
Sbjct: 98 DLKVMLSLVTGLWPRDQRLLYKGKERDDGDHLHMVGVQDKDKVLLLEDPAVKERKLRST- 156
Query: 153 AAARVMQSPCQPFIQV 168
A++M PC FI+V
Sbjct: 157 TLAQLMGVPCHSFIEV 172
>AK058550
Length = 172
Score = 162 bits (411), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 82/136 (60%), Positives = 102/136 (75%), Gaps = 14/136 (10%)
Query: 46 EIGWEVRPGGMLVQKR-------------EGRGGEEVILVRVSTGFAWHDVSIAATSTFG 92
+I WEVRPGGMLVQKR G + I+VRVSTG+ WHDVSI +T+TFG
Sbjct: 38 KIEWEVRPGGMLVQKRRAPEEQDDGSSSMSAHSGADAIVVRVSTGWQWHDVSIDSTATFG 97
Query: 93 ELKVRLSMVTGLEPREQRLLFRGKEREDTDHLHMVGVRDKDKVLLLEDPALKDMKVRAAL 152
+LKV LS+VTGL PR+QRLL++GKER+D DHLHMVGV+DKDKVLLLEDPA+K+ K+R+
Sbjct: 98 DLKVMLSLVTGLWPRDQRLLYKGKERDDGDHLHMVGVQDKDKVLLLEDPAVKERKLRST- 156
Query: 153 AAARVMQSPCQPFIQV 168
A++M PC FI+V
Sbjct: 157 TLAQLMGVPCHSFIEV 172
>Os04g0483000 Ubiquitin domain containing protein
Length = 85
Score = 123 bits (308), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 69/87 (79%), Positives = 75/87 (86%), Gaps = 4/87 (4%)
Query: 82 DVSIAATSTFGELKVRLSMVTGLEPREQRLLFRGKEREDTDHLHMVGVRDKDKVLLLEDP 141
DV+ A GELK +S+VTGLEPREQRLLFRGKERED+DHLHMVGVRDKDKVLLLEDP
Sbjct: 3 DVAFCA----GELKTVVSIVTGLEPREQRLLFRGKEREDSDHLHMVGVRDKDKVLLLEDP 58
Query: 142 ALKDMKVRAALAAARVMQSPCQPFIQV 168
ALKDMK+RAALAA +QSP QPFIQV
Sbjct: 59 ALKDMKLRAALAARATVQSPYQPFIQV 85
>Os01g0831200 Ubiquitin domain containing protein
Length = 262
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/102 (56%), Positives = 73/102 (71%), Gaps = 1/102 (0%)
Query: 49 WEVRPGGMLVQKREGRGGEEVILVRVSTGFAWHDVSIAATSTFGELKVRLSMVTGLEPRE 108
WEVRPGGMLVQ+R+G G V L RVS G ++ DV++ A STFGELK L+ TG+EP
Sbjct: 19 WEVRPGGMLVQRRDGDTGPAVRL-RVSHGASFRDVAVPAHSTFGELKGVLTQATGVEPER 77
Query: 109 QRLLFRGKEREDTDHLHMVGVRDKDKVLLLEDPALKDMKVRA 150
QRL FRGKE+ D + LH GV+D K+LLLE PA +++ RA
Sbjct: 78 QRLFFRGKEKSDNEFLHTAGVKDGAKLLLLEKPAPANVEQRA 119
>Os09g0524800 Ubiquitin domain containing protein
Length = 334
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/101 (46%), Positives = 66/101 (65%), Gaps = 5/101 (4%)
Query: 46 EIGWEVRPGGMLVQKREGRG---GEEVILVRVSTGF--AWHDVSIAATSTFGELKVRLSM 100
E WEVRPGGMLVQKR G V +RV F +H++ I + ++FGELK +LS
Sbjct: 35 EDEWEVRPGGMLVQKRSPDGDAPAAPVPTIRVKVKFNGVYHEIYINSQASFGELKKQLSA 94
Query: 101 VTGLEPREQRLLFRGKEREDTDHLHMVGVRDKDKVLLLEDP 141
TGL P +Q+++++ KER+ L M GV+D+ K++LLEDP
Sbjct: 95 PTGLHPEDQKIVYKDKERDSKAFLDMAGVKDRSKMVLLEDP 135
>Os08g0546100 Ubiquitin domain containing protein
Length = 501
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 65/100 (65%), Gaps = 7/100 (7%)
Query: 49 WEVRPGGMLVQKREGR-----GGEEVILVRVSTGF--AWHDVSIAATSTFGELKVRLSMV 101
WEVRPGGMLVQKR GG V +RV + +H++ I + ++FGELK LS
Sbjct: 210 WEVRPGGMLVQKRSPESEPPPGGAPVPTIRVKVKYNGVYHEIYINSQASFGELKKLLSEK 269
Query: 102 TGLEPREQRLLFRGKEREDTDHLHMVGVRDKDKVLLLEDP 141
TGL P +Q++++R KER+ L + GV+D+ K+LLLEDP
Sbjct: 270 TGLHPDDQKVVYRDKERDSKAFLDIAGVKDRSKMLLLEDP 309
>Os04g0484100
Length = 63
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/65 (70%), Positives = 51/65 (78%), Gaps = 7/65 (10%)
Query: 90 TFGELKVRLSMVTGLEPREQRLLFRGKEREDTDHLHMVGVRDKDKVLLLEDPALKDMKVR 149
++ ELK +SMVTGLEPREQR LFRGKERED+DHL KD VLLLEDPALKDMK+R
Sbjct: 2 SYSELKAVVSMVTGLEPREQRPLFRGKEREDSDHL-------KDMVLLLEDPALKDMKLR 54
Query: 150 AALAA 154
A L A
Sbjct: 55 ATLVA 59
>Os06g0126500 Ubiquitin domain containing protein
Length = 339
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 64/101 (63%), Gaps = 8/101 (7%)
Query: 49 WEVRPGGMLVQKREGRGGEE--------VILVRVSTGFAWHDVSIAATSTFGELKVRLSM 100
WEVRPGGMLVQKR G EE I V+V H++ I + ++FGELK ++
Sbjct: 49 WEVRPGGMLVQKRGGGADEEPVNVKPVPTIRVKVKHAGITHEIYINSQASFGELKKMVAA 108
Query: 101 VTGLEPREQRLLFRGKEREDTDHLHMVGVRDKDKVLLLEDP 141
TGL P +Q+++++ KER+ L M GV+D+ K++++EDP
Sbjct: 109 RTGLHPDDQKVMYKDKERDSKAFLDMAGVKDRSKLVVVEDP 149
>Os04g0619900 Ubiquitin domain containing protein
Length = 272
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 65/110 (59%), Gaps = 16/110 (14%)
Query: 48 GWEVRPGGMLVQKREGRGGEEV----------------ILVRVSTGFAWHDVSIAATSTF 91
GWEVRP GM+VQ RE G I VRV G A H+V++++ ++F
Sbjct: 33 GWEVRPSGMVVQAREEGPGGGGGGGGGMGIPPRPPPPEIKVRVKYGAARHEVAVSSIASF 92
Query: 92 GELKVRLSMVTGLEPREQRLLFRGKEREDTDHLHMVGVRDKDKVLLLEDP 141
GELK L+ TGL +QRL +RGKER + D+L + GV+++ K+ L EDP
Sbjct: 93 GELKKLLAARTGLPAADQRLTYRGKERGNADYLDVCGVKNRSKLYLAEDP 142
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.136 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,819,471
Number of extensions: 167889
Number of successful extensions: 477
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 468
Number of HSP's successfully gapped: 10
Length of query: 168
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 75
Effective length of database: 12,179,899
Effective search space: 913492425
Effective search space used: 913492425
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 152 (63.2 bits)