Os04g0619900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ubiquitin domain containing protein.
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Os04g0619900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ubiquitin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 129.73 | 0.535 | 8.54 | -2.48 | 0.834 | 2.11 | 1.71 | -6.71 | -0.393 | 1.33 | 25.45 | 1257 | -- | -- |
| 150.36 | 0.571 | 8.37 | -0.826 | 1.04 | 1.51 | 1.7 | -- | -0.149 | 2.09 | 22.53 | 2007 | -- | -- |
| 140.78 | 0.553 | 8.53 | -2.52 | 0.853 | 2.12 | -- | -6.82 | -0.305 | 1.44 | 26.16 | 1265 | -- | -- |
| 153.62 | 0.577 | 8.41 | -0.845 | 0.914 | 1.59 | -- | -- | -0.191 | 1.32 | 23.31 | 1244 | -- | -- |
| 175.9 | 0.618 | 8.52 | -2.21 | -- | 2.43 | -- | -5.26 | -0.428 | -- | 24.55 | 1139 | -- | -- |
| 220.51 | 0.696 | 8.3 | -0.317 | 1.1 | -- | 1.71 | -- | 0.152 | 1.33 | -- | -- | -- | -- |
| 232.48 | 0.714 | 8.31 | -0.377 | 1.09 | -- | -- | -- | 0.142 | 1.37 | -- | -- | -- | -- |
| 184.93 | 0.633 | 8.35 | -0.922 | -- | 1.92 | -- | -- | -0.117 | -- | 24.08 | 1120 | -- | -- |
| 168.45 | 0.604 | 8.3 | -- | 0.845 | 1.29 | -- | -- | 0.165 | 1.42 | 26.08 | 1214 | -- | -- |
| 306.25 | 0.818 | 8.29 | -0.333 | -- | -- | -- | -- | 0.165 | -- | -- | -- | -- | -- |
| 236.21 | 0.719 | 8.3 | -- | 1.09 | -- | -- | -- | 0.184 | 1.36 | -- | -- | -- | -- |
| 205.24 | 0.667 | 8.32 | -- | -- | 1.7 | -- | -- | 0.0412 | -- | 24.5 | 1115 | -- | -- |
| 309.18 | 0.821 | 8.28 | -- | -- | -- | -- | -- | 0.202 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 129.62 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 2 | 130.90 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 8 |
| 22 | 132.23 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 17 |
| 23 | 132.26 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 5 |
| 35 | 132.66 | temperature | 25 | 1440 | > th | dose dependent | sin | 16 | NA |
| 46 | 132.90 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 12 |
| 65 | 133.28 | wind | 7 | 43200 | < th | dose independent | rect. | 9 | 7 |
| 66 | 133.29 | wind | 7 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 82 | 133.58 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 21 |
| 103 | 133.77 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 127 | 134.05 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 10 |
| 132 | 134.12 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 10 |
| 147 | 134.31 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 152 | 134.40 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 9 |
| 180 | 134.73 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 184 | 134.76 | wind | 7 | 43200 | > th | dose independent | sin | 0 | NA |
| 190 | 134.81 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 11 |
| 196 | 134.86 | wind | 7 | 43200 | < th | dose independent | sin | 0 | NA |
| 199 | 134.89 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 17 |
| 223 | 135.09 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 288 | 135.38 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 301 | 135.42 | wind | 7 | 43200 | > th | dose independent | rect. | 9 | 13 |
| 303 | 135.42 | wind | 7 | 43200 | < th | dose independent | rect. | 9 | 13 |
| 334 | 135.54 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 358 | 135.70 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 444 | 136.37 | wind | 7 | 43200 | > th | dose dependent | rect. | 11 | 20 |
| 507 | 136.87 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 17 |
| 586 | 137.40 | wind | 7 | 43200 | > th | dose dependent | sin | 19 | NA |
| 590 | 137.42 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 20 |
| 622 | 137.64 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 20 |
| 685 | 137.98 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 11 |
| 762 | 138.50 | wind | 5 | 43200 | > th | dose dependent | sin | 23 | NA |
| 822 | 138.86 | wind | 9 | 43200 | > th | dose independent | rect. | 13 | 18 |
| 895 | 139.25 | wind | 9 | 43200 | < th | dose independent | rect. | 13 | 17 |
| 968 | 139.61 | wind | 7 | 43200 | > th | dose independent | rect. | 16 | 23 |
| 974 | 139.63 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 17 |
| 989 | 139.70 | wind | 7 | 43200 | < th | dose independent | rect. | 16 | 23 |
| 996 | 139.74 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 1 |