BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0619900 Os04g0619900|Os04g0619900
(272 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0619900 Ubiquitin domain containing protein 432 e-121
Os09g0524800 Ubiquitin domain containing protein 170 1e-42
Os08g0546100 Ubiquitin domain containing protein 167 6e-42
Os06g0126500 Ubiquitin domain containing protein 157 1e-38
Os01g0831200 Ubiquitin domain containing protein 133 1e-31
Os01g0907200 Ubiquitin domain containing protein 85 7e-17
AK058550 85 7e-17
Os02g0597700 Ubiquitin domain containing protein 79 2e-15
>Os04g0619900 Ubiquitin domain containing protein
Length = 272
Score = 432 bits (1110), Expect = e-121, Method: Compositional matrix adjust.
Identities = 223/272 (81%), Positives = 223/272 (81%)
Query: 1 MAAVMHXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVRPSGMVVQAREEXXXXXXXXXXXX 60
MAAVMH EVRPSGMVVQAREE
Sbjct: 1 MAAVMHRSSSDGGSSSGWSEAAAASAAGDERAGWEVRPSGMVVQAREEGPGGGGGGGGGM 60
Query: 61 XXXXXXXXXEIKVRVKYGAARHEVAVSSIASFGELKKLLAARTGLPAADQRLTYRGKERG 120
EIKVRVKYGAARHEVAVSSIASFGELKKLLAARTGLPAADQRLTYRGKERG
Sbjct: 61 GIPPRPPPPEIKVRVKYGAARHEVAVSSIASFGELKKLLAARTGLPAADQRLTYRGKERG 120
Query: 121 NADYLDVCGVKNRSKLYLAEDPTSVERRYIERQKSAKIETANRAIGAIALEVDKLADQVR 180
NADYLDVCGVKNRSKLYLAEDPTSVERRYIERQKSAKIETANRAIGAIALEVDKLADQVR
Sbjct: 121 NADYLDVCGVKNRSKLYLAEDPTSVERRYIERQKSAKIETANRAIGAIALEVDKLADQVR 180
Query: 181 SIEKSITRGSKVAEVQITTLIELLMRLAVKLDSIHAEGDSSSQKNIQAKRVQKCVETLDV 240
SIEKSITRGSKVAEVQITTLIELLMRLAVKLDSIHAEGDSSSQKNIQAKRVQKCVETLDV
Sbjct: 181 SIEKSITRGSKVAEVQITTLIELLMRLAVKLDSIHAEGDSSSQKNIQAKRVQKCVETLDV 240
Query: 241 LKISNARLQNVIVTTKWETFDAPATTQWELFD 272
LKISNARLQNVIVTTKWETFDAPATTQWELFD
Sbjct: 241 LKISNARLQNVIVTTKWETFDAPATTQWELFD 272
>Os09g0524800 Ubiquitin domain containing protein
Length = 334
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 134/216 (62%), Gaps = 11/216 (5%)
Query: 35 EVRPSGMVVQAREEXXXXXXXXXXXXXXXXXXXXXEIKVRVKYGAARHEVAVSSIASFGE 94
EVRP GM+VQ R I+V+VK+ HE+ ++S ASFGE
Sbjct: 39 EVRPGGMLVQKRSPDGDAPAAPVPT-----------IRVKVKFNGVYHEIYINSQASFGE 87
Query: 95 LKKLLAARTGLPAADQRLTYRGKERGNADYLDVCGVKNRSKLYLAEDPTSVERRYIERQK 154
LKK L+A TGL DQ++ Y+ KER + +LD+ GVK+RSK+ L EDPT+ +R +E+++
Sbjct: 88 LKKQLSAPTGLHPEDQKIVYKDKERDSKAFLDMAGVKDRSKMVLLEDPTAQAKRLLEQRR 147
Query: 155 SAKIETANRAIGAIALEVDKLADQVRSIEKSITRGSKVAEVQITTLIELLMRLAVKLDSI 214
+ K E A ++I I+L+VDKLA +V ++E + +G +V + + TL E LM VKLD+I
Sbjct: 148 TDKAERAAKSISRISLDVDKLATKVTALEAIVGKGGRVVDADVVTLTEALMNELVKLDAI 207
Query: 215 HAEGDSSSQKNIQAKRVQKCVETLDVLKISNARLQN 250
AEG+ Q+ +Q KRVQK VE+LD ++ NA N
Sbjct: 208 AAEGEVKVQRRMQEKRVQKYVESLDAIRAKNAASHN 243
>Os08g0546100 Ubiquitin domain containing protein
Length = 501
Score = 167 bits (424), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 89/205 (43%), Positives = 127/205 (61%), Gaps = 9/205 (4%)
Query: 35 EVRPSGMVVQAREEXXXXXXXXXXXXXXXXXXXXXEIKVRVKYGAARHEVAVSSIASFGE 94
EVRP GM+VQ R I+V+VKY HE+ ++S ASFGE
Sbjct: 211 EVRPGGMLVQKRSPESEPPPGGAPVPT---------IRVKVKYNGVYHEIYINSQASFGE 261
Query: 95 LKKLLAARTGLPAADQRLTYRGKERGNADYLDVCGVKNRSKLYLAEDPTSVERRYIERQK 154
LKKLL+ +TGL DQ++ YR KER + +LD+ GVK+RSK+ L EDPT+ +R +E ++
Sbjct: 262 LKKLLSEKTGLHPDDQKVVYRDKERDSKAFLDIAGVKDRSKMLLLEDPTAQAKRLLEERR 321
Query: 155 SAKIETANRAIGAIALEVDKLADQVRSIEKSITRGSKVAEVQITTLIELLMRLAVKLDSI 214
K E A +++ +AL+VDKLA +V ++E +++G +V + + L E LM VKLDSI
Sbjct: 322 HCKAERAAKSVSRVALDVDKLASKVSALEAIVSKGGRVVDADVVALTEALMNELVKLDSI 381
Query: 215 HAEGDSSSQKNIQAKRVQKCVETLD 239
A+G+ Q+ +Q KRVQK VE LD
Sbjct: 382 AADGEVKEQRRVQEKRVQKYVEALD 406
>Os06g0126500 Ubiquitin domain containing protein
Length = 339
Score = 157 bits (396), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/212 (43%), Positives = 134/212 (63%), Gaps = 8/212 (3%)
Query: 35 EVRPSGMVVQAREEXXXXXXXXXXXXXXXXXXXXXEIKVRVKYGAARHEVAVSSIASFGE 94
EVRP GM+VQ R I+V+VK+ HE+ ++S ASFGE
Sbjct: 50 EVRPGGMLVQKR--------GGGADEEPVNVKPVPTIRVKVKHAGITHEIYINSQASFGE 101
Query: 95 LKKLLAARTGLPAADQRLTYRGKERGNADYLDVCGVKNRSKLYLAEDPTSVERRYIERQK 154
LKK++AARTGL DQ++ Y+ KER + +LD+ GVK+RSKL + EDP + RR IE ++
Sbjct: 102 LKKMVAARTGLHPDDQKVMYKDKERDSKAFLDMAGVKDRSKLVVVEDPEARARRLIEERR 161
Query: 155 SAKIETANRAIGAIALEVDKLADQVRSIEKSITRGSKVAEVQITTLIELLMRLAVKLDSI 214
+ +E A +A+ A+ EVDKLA +V +++ S+ +G KVAE + + ELLM +KLD++
Sbjct: 162 NGHLEKAAKAVAAVTAEVDKLAPKVAALDASVRKGEKVAENDVVQVTELLMNELLKLDAV 221
Query: 215 HAEGDSSSQKNIQAKRVQKCVETLDVLKISNA 246
A+GD +Q+ +Q KRVQK VETLD + NA
Sbjct: 222 VADGDVKAQRRLQVKRVQKYVETLDAVMAKNA 253
>Os01g0831200 Ubiquitin domain containing protein
Length = 262
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 97/260 (37%), Positives = 139/260 (53%), Gaps = 39/260 (15%)
Query: 35 EVRPSGMVVQAREEXXXXXXXXXXXXXXXXXXXXXEIKVRVKYGAARHEVAVSSIASFGE 94
EVRP GM+VQ R+ +++RV +GA+ +VAV + ++FGE
Sbjct: 20 EVRPGGMLVQRRDGDTGPA-----------------VRLRVSHGASFRDVAVPAHSTFGE 62
Query: 95 LKKLLAARTGLPAADQRLTYRGKERGNADYLDVCGVKNRSKLYLAEDPT--SVERRYIER 152
LK +L TG+ QRL +RGKE+ + ++L GVK+ +KL L E P +VE+R
Sbjct: 63 LKGVLTQATGVEPERQRLFFRGKEKSDNEFLHTAGVKDGAKLLLLEKPAPANVEQRAEPV 122
Query: 153 QKSAKIETANRAIGAIALEVDKLADQVRSIEKSITRGSKVAEVQITTLIELLMRLAVKLD 212
+ A A+G + EVD+L+ +V +EKS+ G K+ + L ELLM +KLD
Sbjct: 123 IMDESMMKACEAVGRVRAEVDRLSAKVCDLEKSVFAGRKIEDKDFVVLTELLMMELLKLD 182
Query: 213 SIHAEGDSSSQKNIQAKRVQKCVETLDVLKISNARL-----QNVIVTTKWETFD------ 261
I AEG++ +Q+ + +RVQ VETLD LK NA ++V VTT+WETFD
Sbjct: 183 GIEAEGEARAQRKAEVRRVQGLVETLDKLKARNANPFSDQNKSVSVTTQWETFDNGMGSL 242
Query: 262 -APA--------TTQWELFD 272
AP T WE FD
Sbjct: 243 NAPPPRVSSTQINTDWEQFD 262
>Os01g0907200 Ubiquitin domain containing protein
Length = 172
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 35 EVRPSGMVVQAREEXXXXXXXXXXXXXXXXXXXXXEIKVRVKYGAARHEVAVSSIASFGE 94
EVRP GM+VQ R I VRV G H+V++ S A+FG+
Sbjct: 42 EVRPGGMLVQKRRAPEEQDDGSSSMSAHSGADA---IVVRVSTGWQWHDVSIDSTATFGD 98
Query: 95 LKKLLAARTGLPAADQRLTYRGKERGNADYLDVCGVKNRSKLYLAEDPTSVERR 148
LK +L+ TGL DQRL Y+GKER + D+L + GV+++ K+ L EDP ER+
Sbjct: 99 LKVMLSLVTGLWPRDQRLLYKGKERDDGDHLHMVGVQDKDKVLLLEDPAVKERK 152
>AK058550
Length = 172
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 35 EVRPSGMVVQAREEXXXXXXXXXXXXXXXXXXXXXEIKVRVKYGAARHEVAVSSIASFGE 94
EVRP GM+VQ R I VRV G H+V++ S A+FG+
Sbjct: 42 EVRPGGMLVQKRRAPEEQDDGSSSMSAHSGADA---IVVRVSTGWQWHDVSIDSTATFGD 98
Query: 95 LKKLLAARTGLPAADQRLTYRGKERGNADYLDVCGVKNRSKLYLAEDPTSVERR 148
LK +L+ TGL DQRL Y+GKER + D+L + GV+++ K+ L EDP ER+
Sbjct: 99 LKVMLSLVTGLWPRDQRLLYKGKERDDGDHLHMVGVQDKDKVLLLEDPAVKERK 152
>Os02g0597700 Ubiquitin domain containing protein
Length = 168
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 62/108 (57%), Gaps = 16/108 (14%)
Query: 35 EVRPSGMVVQAREEXXXXXXXXXXXXXXXXXXXXXEIKVRVKYGAARHEVAVSSIASFGE 94
EVRP GM+VQ RE I VRV G A H+V++++ ++FGE
Sbjct: 50 EVRPGGMLVQKREGRGGEEV----------------ILVRVSTGFAWHDVSIAATSTFGE 93
Query: 95 LKKLLAARTGLPAADQRLTYRGKERGNADYLDVCGVKNRSKLYLAEDP 142
LK L+ TGL +QRL +RGKER + D+L + GV+++ K+ L EDP
Sbjct: 94 LKVRLSMVTGLEPREQRLLFRGKEREDTDHLHMVGVRDKDKVLLLEDP 141
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.129 0.346
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,975,896
Number of extensions: 187409
Number of successful extensions: 736
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 725
Number of HSP's successfully gapped: 8
Length of query: 272
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 173
Effective length of database: 11,866,615
Effective search space: 2052924395
Effective search space used: 2052924395
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)