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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0907200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ubiquitin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.35 (0.109) R2 : 0.294
β1 : -1.81 (0.297) R2dD : 0.11 R2D : -0.0899
β2 : 1.3 (0.147) R2dC : 0.131 R2C : -0.0546
β3 : 4.76 (2.61) R2dE : 0.212 R2E : -0.363
β4 : -4.93 (0.592) R2dD*C : 0.13 R2D*C : -0.116
β5 : 25.8 (7.72) R2dD*E : 0.727 R2D*E : -0.6
γ1 : -0.697 (0.133) R2dN8 : 0.0622 R2N8 : -0.0774
σ : 1.13
deviance : 573.87
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_____
C
peak time of C : 0.346
E
wheather : radiation
threshold : 3.12
memory length : 587
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18
open length of G : 10.9

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
573.87 1.13 4.35 -1.81 1.3 4.76 -4.93 25.8 -0.697 0.346 3.12 587 18 10.9
663.29 1.21 3.98 -1.48 0.989 0.0917 -2.91 -- -0.388 0.588 3.12 587 18 10.9
647.87 1.19 4.34 -1.5 1.2 5.53 -- 25.1 -0.656 0.765 3.634 568 17.9 11.1
671.2 1.21 3.98 -1.78 0.993 -1.16 -- -- -0.406 0.933 20.16 46354 21.3 16.3
698.9 1.23 4.45 -1.34 -- 5.94 -- 25.6 -0.675 -- 5.915 685 18.1 11.1
663.31 1.21 3.98 -1.49 0.988 -- -2.92 -- -0.388 0.577 -- -- -- --
698.97 1.24 3.97 -1.38 1.01 -- -- -- -0.376 1.02 -- -- -- --
729.85 1.26 3.98 -1.78 -- -1.16 -- -- -0.406 -- 20.14 46413 21.2 16.3
731.65 1.26 3.93 -- 1.07 -0.713 -- -- -0.123 0.618 8.162 1105 21.7 16.5
761.91 1.29 3.95 -1.34 -- -- -- -- -0.357 -- -- -- -- --
749.15 1.28 3.93 -- 0.984 -- -- -- -0.223 0.966 -- -- -- --
749.66 1.28 3.88 -- -- -1.06 -- -- -0.231 -- -14.39 170 4.15 12.5
809.41 1.33 3.92 -- -- -- -- -- -0.208 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 578.47 radiation 10 720 < th dose independent rect. 14 13
3 580.62 temperature 20 90 > th dose independent rect. 16 12
4 580.97 radiation 10 720 < th dose independent rect. 16 2
5 581.62 radiation 10 720 < th dose independent rect. 16 11
6 582.66 radiation 10 720 < th dose independent rect. 14 5
33 589.95 radiation 10 720 < th dose independent sin 15 NA
60 595.31 radiation 1 720 > th dose dependent rect. 18 11
63 595.69 temperature 20 30 > th dose independent rect. 12 17
77 596.97 radiation 1 720 > th dose dependent rect. 18 1
88 597.09 temperature 20 30 < th dose independent rect. 16 11
95 597.50 temperature 20 90 > th dose independent sin 12 NA
98 597.62 temperature 20 90 > th dose independent sin 14 NA
104 597.86 temperature 20 30 < th dose independent sin 13 NA
119 598.42 radiation 1 720 > th dose dependent rect. 12 3
128 598.79 temperature 20 90 < th dose independent rect. 12 15
132 598.92 temperature 20 10 < th dose independent rect. 23 4
153 599.34 temperature 20 270 < th dose independent rect. 23 1
171 600.07 atmosphere 1005 720 < th dose independent rect. 17 1
180 600.58 radiation 1 720 > th dose dependent rect. 14 1
187 600.73 radiation 40 720 < th dose dependent rect. 12 16
190 600.86 humidity 90 14400 < th dose independent rect. 23 5
200 601.04 radiation 10 720 > th dose dependent rect. 12 1
204 601.17 humidity 90 14400 < th dose independent rect. 22 7
216 601.41 radiation 1 720 > th dose dependent rect. 12 19
220 601.56 humidity 90 14400 < th dose independent rect. 24 3
247 602.40 humidity 80 14400 > th dose dependent rect. 24 3
251 602.50 radiation 40 720 < th dose dependent rect. 14 14
257 602.64 temperature 20 1440 < th dose independent rect. 5 1
258 602.64 temperature 15 1440 > th dose dependent rect. 2 1
262 602.69 radiation 10 720 < th dose independent rect. 16 7
263 602.71 humidity 80 14400 > th dose dependent rect. 23 5
271 602.86 humidity 90 14400 > th dose independent rect. 23 5
272 602.90 temperature 25 1440 < th dose dependent rect. 2 1
294 603.26 humidity 90 14400 < th dose independent rect. 24 1
301 603.44 radiation 20 720 > th dose independent rect. 12 1
311 603.61 temperature 20 90 < th dose independent rect. 12 17
312 603.62 radiation 1 720 > th dose dependent rect. 12 7
345 604.02 humidity 90 14400 > th dose independent rect. 24 3
348 604.09 radiation 40 14400 < th dose independent rect. 1 7
372 604.49 radiation 40 720 < th dose dependent rect. 11 8
376 604.59 humidity 80 14400 > th dose dependent rect. 24 1
413 605.25 radiation 40 14400 < th dose independent rect. 18 14
436 605.58 radiation 40 14400 < th dose independent rect. 20 12
438 605.62 temperature 20 90 < th dose independent rect. 15 18
439 605.63 temperature 20 90 > th dose independent rect. 16 17
440 605.65 radiation 40 14400 < th dose independent rect. 22 10
450 605.81 temperature 20 90 < th dose independent rect. 15 20
463 605.95 temperature 20 1440 > th dose independent rect. 5 2
465 605.96 radiation 40 14400 < th dose independent rect. 7 1
479 606.13 temperature 20 90 > th dose independent rect. 6 23
485 606.20 atmosphere 1005 270 > th dose independent rect. 13 11
493 606.29 temperature 20 90 < th dose independent rect. 13 22
497 606.33 temperature 20 90 < th dose independent rect. 17 16
513 606.58 humidity 70 720 > th dose independent rect. 16 2
537 606.76 temperature 20 270 > th dose dependent sin 12 NA
539 606.79 radiation 20 720 > th dose independent rect. 12 3
541 606.83 atmosphere 1005 270 > th dose independent rect. 15 9
553 606.94 temperature 15 30 > th dose dependent rect. 17 11
562 607.02 humidity 90 14400 > th dose dependent rect. 4 3
598 607.43 radiation 20 4320 < th dose independent rect. 17 13
618 607.67 radiation 10 720 < th dose dependent rect. 9 19
649 608.09 temperature 20 90 > th dose independent rect. 11 23
668 608.25 radiation 20 1440 < th dose independent rect. 11 2
715 608.59 temperature 20 90 < th dose independent rect. 22 22
718 608.61 temperature 20 90 < th dose independent rect. 6 21
733 608.79 radiation 20 4320 < th dose independent rect. 17 2
740 608.88 temperature 20 90 < th dose independent rect. 22 11
758 609.04 radiation 30 14400 > th dose dependent rect. 7 1
794 609.22 radiation 10 720 < th dose dependent rect. 9 10
817 609.40 temperature 20 90 < th dose independent rect. 9 18
851 609.67 radiation 40 720 < th dose dependent rect. 14 5
865 609.75 temperature 20 90 < th dose independent rect. 22 13
892 609.95 radiation 20 720 < th dose independent rect. 24 19
960 610.36 temperature 20 1440 > th dose dependent rect. 22 1
997 610.57 radiation 10 720 > th dose independent rect. 14 1
998 610.58 radiation 20 4320 < th dose independent rect. 17 4