BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0907200 Os01g0907200|J065002B08
(172 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0907200 Ubiquitin domain containing protein 328 1e-90
AK058550 328 1e-90
Os02g0597700 Ubiquitin domain containing protein 159 1e-39
Os09g0524800 Ubiquitin domain containing protein 101 3e-22
Os08g0546100 Ubiquitin domain containing protein 100 7e-22
Os01g0831200 Ubiquitin domain containing protein 96 1e-20
Os06g0126500 Ubiquitin domain containing protein 91 4e-19
Os04g0483000 Ubiquitin domain containing protein 91 5e-19
Os04g0619900 Ubiquitin domain containing protein 89 2e-18
Os04g0484100 73 1e-13
>Os01g0907200 Ubiquitin domain containing protein
Length = 172
Score = 328 bits (841), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 163/172 (94%), Positives = 163/172 (94%)
Query: 1 MVKIPSPRRLFRSRSKSIXXXXXXXXXDICAMVAEHEKIEWEVRPGGMLVQKRRAPEEQD 60
MVKIPSPRRLFRSRSKSI DICAMVAEHEKIEWEVRPGGMLVQKRRAPEEQD
Sbjct: 1 MVKIPSPRRLFRSRSKSIGGAGGGVGADICAMVAEHEKIEWEVRPGGMLVQKRRAPEEQD 60
Query: 61 DGSSSMSAHSGADAIVVRVSTGWQWHDVSIDSTATFGDLKVMLSLVTGLWPRDQRLLYKG 120
DGSSSMSAHSGADAIVVRVSTGWQWHDVSIDSTATFGDLKVMLSLVTGLWPRDQRLLYKG
Sbjct: 61 DGSSSMSAHSGADAIVVRVSTGWQWHDVSIDSTATFGDLKVMLSLVTGLWPRDQRLLYKG 120
Query: 121 KERDDGDHLHMVGVQDKDKVLLLEDPAVKERKLRSTTLAQLMGVPCHSFIEV 172
KERDDGDHLHMVGVQDKDKVLLLEDPAVKERKLRSTTLAQLMGVPCHSFIEV
Sbjct: 121 KERDDGDHLHMVGVQDKDKVLLLEDPAVKERKLRSTTLAQLMGVPCHSFIEV 172
>AK058550
Length = 172
Score = 328 bits (841), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 163/172 (94%), Positives = 163/172 (94%)
Query: 1 MVKIPSPRRLFRSRSKSIXXXXXXXXXDICAMVAEHEKIEWEVRPGGMLVQKRRAPEEQD 60
MVKIPSPRRLFRSRSKSI DICAMVAEHEKIEWEVRPGGMLVQKRRAPEEQD
Sbjct: 1 MVKIPSPRRLFRSRSKSIGGAGGGVGADICAMVAEHEKIEWEVRPGGMLVQKRRAPEEQD 60
Query: 61 DGSSSMSAHSGADAIVVRVSTGWQWHDVSIDSTATFGDLKVMLSLVTGLWPRDQRLLYKG 120
DGSSSMSAHSGADAIVVRVSTGWQWHDVSIDSTATFGDLKVMLSLVTGLWPRDQRLLYKG
Sbjct: 61 DGSSSMSAHSGADAIVVRVSTGWQWHDVSIDSTATFGDLKVMLSLVTGLWPRDQRLLYKG 120
Query: 121 KERDDGDHLHMVGVQDKDKVLLLEDPAVKERKLRSTTLAQLMGVPCHSFIEV 172
KERDDGDHLHMVGVQDKDKVLLLEDPAVKERKLRSTTLAQLMGVPCHSFIEV
Sbjct: 121 KERDDGDHLHMVGVQDKDKVLLLEDPAVKERKLRSTTLAQLMGVPCHSFIEV 172
>Os02g0597700 Ubiquitin domain containing protein
Length = 168
Score = 159 bits (402), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 82/136 (60%), Positives = 102/136 (75%), Gaps = 14/136 (10%)
Query: 38 KIEWEVRPGGMLVQKRRAPEEQDDGSSSMSAHSGADAIVVRVSTGWQWHDVSIDSTATFG 97
+I WEVRPGGMLVQKR G + I+VRVSTG+ WHDVSI +T+TFG
Sbjct: 46 EIGWEVRPGGMLVQKR-------------EGRGGEEVILVRVSTGFAWHDVSIAATSTFG 92
Query: 98 DLKVMLSLVTGLWPRDQRLLYKGKERDDGDHLHMVGVQDKDKVLLLEDPAVKERKLR-ST 156
+LKV LS+VTGL PR+QRLL++GKER+D DHLHMVGV+DKDKVLLLEDPA+K+ K+R +
Sbjct: 93 ELKVRLSMVTGLEPREQRLLFRGKEREDTDHLHMVGVRDKDKVLLLEDPALKDMKVRAAL 152
Query: 157 TLAQLMGVPCHSFIEV 172
A++M PC FI+V
Sbjct: 153 AAARVMQSPCQPFIQV 168
>Os09g0524800 Ubiquitin domain containing protein
Length = 334
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 72/114 (63%), Gaps = 8/114 (7%)
Query: 40 EWEVRPGGMLVQKRRAPEEQDDGSSSMSAHSGADAIVVRVSTGWQWHDVSIDSTATFGDL 99
EWEVRPGGMLVQKR DG + + I V+V +H++ I+S A+FG+L
Sbjct: 37 EWEVRPGGMLVQKR-----SPDGDAPAAP---VPTIRVKVKFNGVYHEIYINSQASFGEL 88
Query: 100 KVMLSLVTGLWPRDQRLLYKGKERDDGDHLHMVGVQDKDKVLLLEDPAVKERKL 153
K LS TGL P DQ+++YK KERD L M GV+D+ K++LLEDP + ++L
Sbjct: 89 KKQLSAPTGLHPEDQKIVYKDKERDSKAFLDMAGVKDRSKMVLLEDPTAQAKRL 142
>Os08g0546100 Ubiquitin domain containing protein
Length = 501
Score = 100 bits (248), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 77/123 (62%), Gaps = 8/123 (6%)
Query: 31 AMVAEHEKIEWEVRPGGMLVQKRRAPEEQDDGSSSMSAHSGADAIVVRVSTGWQWHDVSI 90
A VA+ E WEVRPGGMLVQKR E G + + I V+V +H++ I
Sbjct: 202 AAVAKEEV--WEVRPGGMLVQKRSPESEPPPGGAPVPT------IRVKVKYNGVYHEIYI 253
Query: 91 DSTATFGDLKVMLSLVTGLWPRDQRLLYKGKERDDGDHLHMVGVQDKDKVLLLEDPAVKE 150
+S A+FG+LK +LS TGL P DQ+++Y+ KERD L + GV+D+ K+LLLEDP +
Sbjct: 254 NSQASFGELKKLLSEKTGLHPDDQKVVYRDKERDSKAFLDIAGVKDRSKMLLLEDPTAQA 313
Query: 151 RKL 153
++L
Sbjct: 314 KRL 316
>Os01g0831200 Ubiquitin domain containing protein
Length = 262
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 69/108 (63%), Gaps = 14/108 (12%)
Query: 40 EWEVRPGGMLVQKRRAPEEQDDGSSSMSAHSGADAIVVRVSTGWQWHDVSIDSTATFGDL 99
EWEVRPGGMLVQ+R DG + A+ +RVS G + DV++ + +TFG+L
Sbjct: 18 EWEVRPGGMLVQRR-------DGDT-------GPAVRLRVSHGASFRDVAVPAHSTFGEL 63
Query: 100 KVMLSLVTGLWPRDQRLLYKGKERDDGDHLHMVGVQDKDKVLLLEDPA 147
K +L+ TG+ P QRL ++GKE+ D + LH GV+D K+LLLE PA
Sbjct: 64 KGVLTQATGVEPERQRLFFRGKEKSDNEFLHTAGVKDGAKLLLLEKPA 111
>Os06g0126500 Ubiquitin domain containing protein
Length = 339
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 5/113 (4%)
Query: 41 WEVRPGGMLVQKRRAPEEQDDGSSSMSAHSGADAIVVRVSTGWQWHDVSIDSTATFGDLK 100
WEVRPGGMLVQKR +++ + I V+V H++ I+S A+FG+LK
Sbjct: 49 WEVRPGGMLVQKRGGGADEEPVNVK-----PVPTIRVKVKHAGITHEIYINSQASFGELK 103
Query: 101 VMLSLVTGLWPRDQRLLYKGKERDDGDHLHMVGVQDKDKVLLLEDPAVKERKL 153
M++ TGL P DQ+++YK KERD L M GV+D+ K++++EDP + R+L
Sbjct: 104 KMVAARTGLHPDDQKVMYKDKERDSKAFLDMAGVKDRSKLVVVEDPEARARRL 156
>Os04g0483000 Ubiquitin domain containing protein
Length = 85
Score = 90.5 bits (223), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 54/64 (84%)
Query: 89 SIDSTATFGDLKVMLSLVTGLWPRDQRLLYKGKERDDGDHLHMVGVQDKDKVLLLEDPAV 148
+ D G+LK ++S+VTGL PR+QRLL++GKER+D DHLHMVGV+DKDKVLLLEDPA+
Sbjct: 1 TCDVAFCAGELKTVVSIVTGLEPREQRLLFRGKEREDSDHLHMVGVRDKDKVLLLEDPAL 60
Query: 149 KERK 152
K+ K
Sbjct: 61 KDMK 64
>Os04g0619900 Ubiquitin domain containing protein
Length = 272
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 67/119 (56%), Gaps = 3/119 (2%)
Query: 37 EKIEWEVRPGGMLVQKRRAPEEQDDGSSSMSAHSGADA---IVVRVSTGWQWHDVSIDST 93
E+ WEVRP GM+VQ R G I VRV G H+V++ S
Sbjct: 30 ERAGWEVRPSGMVVQAREEGPGGGGGGGGGMGIPPRPPPPEIKVRVKYGAARHEVAVSSI 89
Query: 94 ATFGDLKVMLSLVTGLWPRDQRLLYKGKERDDGDHLHMVGVQDKDKVLLLEDPAVKERK 152
A+FG+LK +L+ TGL DQRL Y+GKER + D+L + GV+++ K+ L EDP ER+
Sbjct: 90 ASFGELKKLLAARTGLPAADQRLTYRGKERGNADYLDVCGVKNRSKLYLAEDPTSVERR 148
>Os04g0484100
Length = 63
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 51/66 (77%), Gaps = 7/66 (10%)
Query: 95 TFGDLKVMLSLVTGLWPRDQRLLYKGKERDDGDHLHMVGVQDKDKVLLLEDPAVKERKLR 154
++ +LK ++S+VTGL PR+QR L++GKER+D DHL KD VLLLEDPA+K+ KLR
Sbjct: 2 SYSELKAVVSMVTGLEPREQRPLFRGKEREDSDHL-------KDMVLLLEDPALKDMKLR 54
Query: 155 STTLAQ 160
+T +A+
Sbjct: 55 ATLVAR 60
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,725,136
Number of extensions: 224628
Number of successful extensions: 708
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 701
Number of HSP's successfully gapped: 10
Length of query: 172
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 78
Effective length of database: 12,127,685
Effective search space: 945959430
Effective search space used: 945959430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 152 (63.2 bits)