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Os08g0546100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ubiquitin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.45 (0.314) R2 : 0.405
β1 : 10.2 (2.9) R2dD : 3.48 R2D : -6
β2 : 0.776 (0.151) R2dC : 0.0401 R2C : -0.908
β3 : -12.3 (3.11) R2dE : 7.43 R2E : -9.91
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 132 (29.2) R2dD*E : 14.3 R2D*E : -9.26
γ1 : -0.563 (0.119) R2dN8 : 0.0406 R2N8 : -1.05
σ : 1.03
deviance : 488.26
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C
peak time of C : 16.5
E
wheather : temperature
threshold : 30.19
memory length : 813
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18
open length of G : 0.793

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
486.52 1.04 7.47 10 0.784 -12.3 -0.871 131 -0.564 16.6 30.16 787 18 1.33
598.61 1.15 8.88 -2.64 0.241 1.32 -2.11 -- -0.752 17.2 30.16 787 18 1.33
488.26 1.03 7.45 10.2 0.776 -12.3 -- 132 -0.563 16.5 30.19 813 18 0.793
507.72 1.05 8.84 -2.84 0.633 1.74 -- -- -0.561 15.9 29.32 783 18 1.45
519.36 1.06 7.45 10.2 -- -12.6 -- 132 -0.604 -- 30.2 804 18 4.52
603.2 1.15 8.88 -2.63 0.29 -- -2 -- -0.764 17.1 -- -- -- --
613.29 1.16 8.89 -2.63 0.277 -- -- -- -0.774 16.8 -- -- -- --
527.57 1.07 8.84 -2.86 -- 1.55 -- -- -0.605 -- 29.6 755 17.9 2.65
721.02 1.25 8.78 -- 0.623 1.45 -- -- -0.287 15.9 29.5 759 18 2.01
617.34 1.16 8.88 -2.64 -- -- -- -- -0.781 -- -- -- -- --
795.17 1.32 8.82 -- 0.325 -- -- -- -0.481 16.5 -- -- -- --
739.23 1.27 8.78 -- -- 1.22 -- -- -0.325 -- 31.73 822 17.9 3.16
800.82 1.32 8.82 -- -- -- -- -- -0.488 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 488.17 temperature 30 720 > th dose dependent rect. 18 1
15 494.87 humidity 50 1440 < th dose independent rect. 16 1
16 495.01 humidity 50 1440 < th dose dependent rect. 16 1
32 501.14 temperature 30 720 > th dose independent rect. 18 1
46 501.88 humidity 70 720 < th dose independent rect. 18 14
47 502.05 humidity 70 720 < th dose dependent rect. 18 14
48 502.12 humidity 70 720 < th dose dependent rect. 18 2
59 502.19 humidity 70 720 < th dose independent rect. 18 2
72 502.49 humidity 70 720 > th dose independent rect. 19 8
89 506.02 humidity 50 1440 > th dose independent rect. 16 1
130 508.14 humidity 70 720 > th dose independent rect. 17 14
146 510.11 wind 1 90 < th dose independent rect. 4 1
150 511.06 wind 1 90 < th dose dependent rect. 4 1
156 512.42 humidity 70 720 > th dose independent sin 12 NA
228 515.65 humidity 70 1440 < th dose dependent sin 12 NA
260 517.36 humidity 60 1440 < th dose independent sin 12 NA
287 517.54 humidity 60 1440 > th dose independent rect. 16 3
309 518.22 temperature 25 720 > th dose dependent rect. 21 2
449 520.46 wind 3 4320 > th dose independent rect. 8 1
456 520.90 temperature 30 720 < th dose independent rect. 18 8
465 521.16 wind 3 4320 < th dose independent rect. 8 1
531 521.56 humidity 70 720 > th dose independent rect. 18 2
722 523.72 temperature 30 1440 < th dose independent rect. 18 11
764 523.91 radiation 20 1440 > th dose dependent rect. 16 16
765 523.94 temperature 30 1440 < th dose independent rect. 18 2
824 524.93 temperature 30 1440 < th dose independent rect. 18 14
887 525.77 radiation 20 1440 > th dose independent rect. 16 16