BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0546100 Os08g0546100|Os08g0546100
(501 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G52060.1 | chr5:21152449-21153741 REVERSE LENGTH=343 235 4e-62
AT5G07220.1 | chr5:2265545-2266720 REVERSE LENGTH=304 227 1e-59
AT5G62100.1 | chr5:24940477-24941775 FORWARD LENGTH=297 207 8e-54
AT3G51780.1 | chr3:19207029-19208178 REVERSE LENGTH=270 127 2e-29
AT5G14360.1 | chr5:4631038-4631641 FORWARD LENGTH=164 93 3e-19
AT5G40630.1 | chr5:16271402-16272429 REVERSE LENGTH=166 77 2e-14
>AT5G52060.1 | chr5:21152449-21153741 REVERSE LENGTH=343
Length = 342
Score = 235 bits (599), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 112/198 (56%), Positives = 151/198 (76%), Gaps = 1/198 (0%)
Query: 211 EVRPGGMLVQKRXXXXXXXXXXXXXXTIRVKVKYNGVYHEIYINSQASFGELKKLLSEKT 270
E+RPGGMLVQKR IRV++KY VYHEI I+ QASFGELKK+L+ T
Sbjct: 41 EIRPGGMLVQKRNPDLDPVGPPPPP-MIRVRIKYGAVYHEINISPQASFGELKKMLTGPT 99
Query: 271 GLHPDDQKVVYRDKERDSKAFLDIAGVKDRSKMLLLEDPTAQAKRLLEERRHCKAERAAK 330
G+H DQK++Y+DKERDSKAFLD++GVKD+SKM+L+EDP +Q KR LE R+ K E+A+K
Sbjct: 100 GIHHQDQKLMYKDKERDSKAFLDVSGVKDKSKMVLIEDPLSQEKRFLEMRKIAKTEKASK 159
Query: 331 SVSRVALDVDKLASKVSALEAIVSKGGRVVDADVVALTEALMNELVKLDSIAADGEVKEQ 390
++S ++L+VD+L +VSA E + KGG++ + D+V + E LMNEL+KLD+I A+G+VK Q
Sbjct: 160 AISDISLEVDRLGGRVSAFEMVTKKGGKIAEKDLVTVIELLMNELIKLDAIVAEGDVKLQ 219
Query: 391 RRVQEKRVQKYVEALDAI 408
R++Q KRVQ YVE LDA+
Sbjct: 220 RKMQVKRVQNYVETLDAL 237
>AT5G07220.1 | chr5:2265545-2266720 REVERSE LENGTH=304
Length = 303
Score = 227 bits (579), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 110/199 (55%), Positives = 151/199 (75%), Gaps = 5/199 (2%)
Query: 210 WEVRPGGMLVQKRXXXXXXXXXXXXXXTIRVKVKYNGVYHEIYINSQASFGELKKLLSEK 269
WE RPGGM+VQ+R RV+VKY VYHEI INSQ+SFGELKK+LS++
Sbjct: 22 WESRPGGMVVQRRTDQNSDVPR-----VFRVRVKYGSVYHEININSQSSFGELKKMLSDQ 76
Query: 270 TGLHPDDQKVVYRDKERDSKAFLDIAGVKDRSKMLLLEDPTAQAKRLLEERRHCKAERAA 329
GLH +D KV+Y+DKERDSK FLD+ GVKDRSK+++ EDP +Q KRLL +R++ E+A+
Sbjct: 77 VGLHHEDMKVLYKDKERDSKMFLDLCGVKDRSKLVVKEDPISQEKRLLAKRKNAAIEKAS 136
Query: 330 KSVSRVALDVDKLASKVSALEAIVSKGGRVVDADVVALTEALMNELVKLDSIAADGEVKE 389
KS+S ++ +VD+LA +VSA E +++KGG+V + +V L E LMN+L++LD+I ADG+VK
Sbjct: 137 KSISDISFEVDRLAGQVSAFETVINKGGKVEEKSLVNLIEMLMNQLLRLDAIIADGDVKL 196
Query: 390 QRRVQEKRVQKYVEALDAI 408
R++Q +RVQKYVEALD +
Sbjct: 197 MRKMQVQRVQKYVEALDLL 215
>AT5G62100.1 | chr5:24940477-24941775 FORWARD LENGTH=297
Length = 296
Score = 207 bits (528), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 102/209 (48%), Positives = 150/209 (71%), Gaps = 16/209 (7%)
Query: 211 EVRPGGMLVQKRXXXXXXXXXXXXXXTIRVKVKYNGVYHEIYINSQASFGELKKLLSEKT 270
E+RPGGM+VQKR IRV+VKY V+HEI INSQ++FGELKK+LS T
Sbjct: 17 ELRPGGMVVQKRTDHSSSVPRG-----IRVRVKYGSVHHEISINSQSTFGELKKILSGAT 71
Query: 271 GLHPDDQKVVYRDKERDSKAFLDIAGVKDRSKMLLLEDPTAQAKRLLEERRHCKAERAAK 330
G+H D +++Y+DKERDSK FLD++GVKDRSK++L+EDP +Q KRLLE R+ E+++K
Sbjct: 72 GVHHQDMQIIYKDKERDSKMFLDLSGVKDRSKLILIEDPISQEKRLLELRKIATKEKSSK 131
Query: 331 SVSRVALDVDKLASKVSALEAIVSKGGRVVDADVVALTEALMNELVKLDSIAADGEVKEQ 390
++S ++ V++LA ++SA + ++ KGG+V + ++ L E LMN+LVKLD+I+ DG+VK +
Sbjct: 132 AISDISFQVERLAGQLSAFDTVIGKGGKVEEKNLENLMEMLMNQLVKLDAISGDGDVKLK 191
Query: 391 RRVQ-----------EKRVQKYVEALDAI 408
+++Q E+R+ KYVEALD +
Sbjct: 192 KKMQNLMIRFTNCWKEERLHKYVEALDLL 220
>AT3G51780.1 | chr3:19207029-19208178 REVERSE LENGTH=270
Length = 269
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 120/212 (56%), Gaps = 9/212 (4%)
Query: 206 KEEVWEVRPGGMLVQKRXXXXXX---------XXXXXXXXTIRVKVKYNGVYHEIYINSQ 256
+E WEVRPGGMLVQ+R TIR+ V + +H+++I++
Sbjct: 7 EESEWEVRPGGMLVQRRDDAASSDHKPLQDPDSASAAFAQTIRITVSHGSSHHDLHISAH 66
Query: 257 ASFGELKKLLSEKTGLHPDDQKVVYRDKERDSKAFLDIAGVKDRSKMLLLEDPTAQAKRL 316
A+FG++KK L +KTGL + K+++R ERD L AGVKD SK++++ + T +
Sbjct: 67 ATFGDVKKALVQKTGLEASELKILFRGVERDDAEQLQAAGVKDASKLVVVVEDTNKRVEQ 126
Query: 317 LEERRHCKAERAAKSVSRVALDVDKLASKVSALEAIVSKGGRVVDADVVALTEALMNELV 376
+ E+A +V+ V +VDKL+ +V ALE V+ G +V + E LM +L+
Sbjct: 127 QPPVVTKEMEKAIAAVNAVTGEVDKLSDRVVALEVAVNGGTQVAVREFDMAAELLMRQLL 186
Query: 377 KLDSIAADGEVKEQRRVQEKRVQKYVEALDAI 408
KLD I A+G+ K QR+ + +R+Q EA+D +
Sbjct: 187 KLDGIEAEGDAKVQRKAEVRRIQNLQEAVDKL 218
>AT5G14360.1 | chr5:4631038-4631641 FORWARD LENGTH=164
Length = 163
Score = 93.2 bits (230), Expect = 3e-19, Method: Composition-based stats.
Identities = 46/109 (42%), Positives = 68/109 (62%), Gaps = 7/109 (6%)
Query: 210 WEVRPGGMLVQKRXXXXXXXXXXXXXXTIRVKVKYNGVYHEIYINSQASFGELKKLLSEK 269
WE+RPGGMLVQKR I ++V +H++ I + ++FGELK +LS
Sbjct: 49 WELRPGGMLVQKRQESIGEDL-------ISIRVSTFAHFHDLSIEATSTFGELKMVLSLL 101
Query: 270 TGLHPDDQKVVYRDKERDSKAFLDIAGVKDRSKMLLLEDPTAQAKRLLE 318
TGL P Q++V++ KER+ +L + GV D+ K+LLLEDP + K+LL+
Sbjct: 102 TGLEPKQQRLVFKGKEREDHEYLHMVGVGDKDKVLLLEDPGFKDKKLLD 150
>AT5G40630.1 | chr5:16271402-16272429 REVERSE LENGTH=166
Length = 165
Score = 77.0 bits (188), Expect = 2e-14, Method: Composition-based stats.
Identities = 36/100 (36%), Positives = 60/100 (60%), Gaps = 5/100 (5%)
Query: 210 WEVRPGGMLVQKRXXXXXXXXXXXXXXTIRVKVKYNGVYHEIYINSQASFGELKKLLSEK 269
WE+RPGGMLVQKR + ++ Y EI I++ ++FGELK +++
Sbjct: 57 WEMRPGGMLVQKRSEDSNTEDLISLRVSTVSQLSY-----EISIDANSTFGELKMMIAIV 111
Query: 270 TGLHPDDQKVVYRDKERDSKAFLDIAGVKDRSKMLLLEDP 309
+G+ +Q++++R KER+ + +L + GV D K+ LL+DP
Sbjct: 112 SGIEAKEQRLLFRGKEREDREYLHMIGVGDGDKVFLLQDP 151
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.134 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,358,755
Number of extensions: 319613
Number of successful extensions: 1021
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1013
Number of HSP's successfully gapped: 6
Length of query: 501
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 398
Effective length of database: 8,282,721
Effective search space: 3296522958
Effective search space used: 3296522958
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)