BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0546100 Os08g0546100|Os08g0546100
(501 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0546100 Ubiquitin domain containing protein 772 0.0
Os09g0524800 Ubiquitin domain containing protein 319 3e-87
Os06g0126500 Ubiquitin domain containing protein 248 7e-66
Os04g0619900 Ubiquitin domain containing protein 171 1e-42
Os01g0831200 Ubiquitin domain containing protein 124 1e-28
Os01g0907200 Ubiquitin domain containing protein 94 2e-19
AK058550 94 2e-19
Os02g0597700 Ubiquitin domain containing protein 87 4e-17
>Os08g0546100 Ubiquitin domain containing protein
Length = 501
Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/501 (79%), Positives = 398/501 (79%)
Query: 1 MEDXXXXXXXXXXXLHVCPGCRWPPLPEEEDSAALADRWPPPVIGTRAASDDWHTGFRIY 60
MED LHVCPGCRWPPLPEEEDSAALADRWPPPVIGTRAASDDWHTGFRIY
Sbjct: 1 MEDVGARRRGRVAVLHVCPGCRWPPLPEEEDSAALADRWPPPVIGTRAASDDWHTGFRIY 60
Query: 61 LSEELDCCCGSSPMQGCLCLAIFCFCSPNNADFLLASVSFIFHFVPNTFSSVGAKLATLQ 120
LSEELDCCCGSSPMQGCLCLAIFCFCSPNNADFLLASVSFIFHFVPNTFSSVGAKLATLQ
Sbjct: 61 LSEELDCCCGSSPMQGCLCLAIFCFCSPNNADFLLASVSFIFHFVPNTFSSVGAKLATLQ 120
Query: 121 CTQACKMLGSSNAVVISEIKEDAICPADRSAEGIEHDEASDLFLPFLLRFIPVSNWRIVL 180
CTQACKMLGSSNAVVISEIKEDAICPADRSAEGIEHDEASDLFLPFLLRFIPVSNWRIVL
Sbjct: 121 CTQACKMLGSSNAVVISEIKEDAICPADRSAEGIEHDEASDLFLPFLLRFIPVSNWRIVL 180
Query: 181 LYEKKMMRGKDQKFPAMKKETAAVAKEEVWEVRPGGMLVQKRXXXXXXXXXXXXXXTIRV 240
LYEKKMMRGKDQKFPAMKKETAAVAKEEVWEVRPGGMLVQKR TIRV
Sbjct: 181 LYEKKMMRGKDQKFPAMKKETAAVAKEEVWEVRPGGMLVQKRSPESEPPPGGAPVPTIRV 240
Query: 241 KVKYNGVYHEIYINSQASFGELKKLLSEKTGLHPDDQKVVYRDKERDSKAFLDIAGVKDR 300
KVKYNGVYHEIYINSQASFGELKKLLSEKTGLHPDDQKVVYRDKERDSKAFLDIAGVKDR
Sbjct: 241 KVKYNGVYHEIYINSQASFGELKKLLSEKTGLHPDDQKVVYRDKERDSKAFLDIAGVKDR 300
Query: 301 SKMLLLEDPTAQAKRLLEERRHCKAERAAKSVSRVALDVDKLASKVSALEAIVSKGGRVV 360
SKMLLLEDPTAQAKRLLEERRHCKAERAAKSVSRVALDVDKLASKVSALEAIVSKGGRVV
Sbjct: 301 SKMLLLEDPTAQAKRLLEERRHCKAERAAKSVSRVALDVDKLASKVSALEAIVSKGGRVV 360
Query: 361 DADVVALTEALMNELVKLDSIAADGEVKEQRRVQEKRVQKYVEALDAIXXXXXXXXXXXX 420
DADVVALTEALMNELVKLDSIAADGEVKEQRRVQEKRVQKYVEALDAI
Sbjct: 361 DADVVALTEALMNELVKLDSIAADGEVKEQRRVQEKRVQKYVEALDAIRAKTKKAAAAPP 420
Query: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSWESFDLLXXXXXXXXXXXX 480
SWESFDLL
Sbjct: 421 KARPPHLPPRPPPAQQQQRRQFQPPAPATATAPAPQTATASWESFDLLSSVPSTSSAPVT 480
Query: 481 XXXXXXXXXXXXXXRFEWELF 501
RFEWELF
Sbjct: 481 TMAPATTTTTSPSPRFEWELF 501
>Os09g0524800 Ubiquitin domain containing protein
Length = 334
Score = 319 bits (817), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 162/203 (79%), Positives = 180/203 (88%), Gaps = 2/203 (0%)
Query: 206 KEEVWEVRPGGMLVQKRXXXXXXXXXXXXXXTIRVKVKYNGVYHEIYINSQASFGELKKL 265
+E+ WEVRPGGMLVQKR TIRVKVK+NGVYHEIYINSQASFGELKK
Sbjct: 34 REDEWEVRPGGMLVQKRSPDGDAPAAPVP--TIRVKVKFNGVYHEIYINSQASFGELKKQ 91
Query: 266 LSEKTGLHPDDQKVVYRDKERDSKAFLDIAGVKDRSKMLLLEDPTAQAKRLLEERRHCKA 325
LS TGLHP+DQK+VY+DKERDSKAFLD+AGVKDRSKM+LLEDPTAQAKRLLE+RR KA
Sbjct: 92 LSAPTGLHPEDQKIVYKDKERDSKAFLDMAGVKDRSKMVLLEDPTAQAKRLLEQRRTDKA 151
Query: 326 ERAAKSVSRVALDVDKLASKVSALEAIVSKGGRVVDADVVALTEALMNELVKLDSIAADG 385
ERAAKS+SR++LDVDKLA+KV+ALEAIV KGGRVVDADVV LTEALMNELVKLD+IAA+G
Sbjct: 152 ERAAKSISRISLDVDKLATKVTALEAIVGKGGRVVDADVVTLTEALMNELVKLDAIAAEG 211
Query: 386 EVKEQRRVQEKRVQKYVEALDAI 408
EVK QRR+QEKRVQKYVE+LDAI
Sbjct: 212 EVKVQRRMQEKRVQKYVESLDAI 234
>Os06g0126500 Ubiquitin domain containing protein
Length = 339
Score = 248 bits (633), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 134/203 (66%), Positives = 166/203 (81%), Gaps = 1/203 (0%)
Query: 207 EEVWEVRPGGMLVQKRXXXXXXXXXXXXXX-TIRVKVKYNGVYHEIYINSQASFGELKKL 265
EEVWEVRPGGMLVQKR TIRVKVK+ G+ HEIYINSQASFGELKK+
Sbjct: 46 EEVWEVRPGGMLVQKRGGGADEEPVNVKPVPTIRVKVKHAGITHEIYINSQASFGELKKM 105
Query: 266 LSEKTGLHPDDQKVVYRDKERDSKAFLDIAGVKDRSKMLLLEDPTAQAKRLLEERRHCKA 325
++ +TGLHPDDQKV+Y+DKERDSKAFLD+AGVKDRSK++++EDP A+A+RL+EERR+
Sbjct: 106 VAARTGLHPDDQKVMYKDKERDSKAFLDMAGVKDRSKLVVVEDPEARARRLIEERRNGHL 165
Query: 326 ERAAKSVSRVALDVDKLASKVSALEAIVSKGGRVVDADVVALTEALMNELVKLDSIAADG 385
E+AAK+V+ V +VDKLA KV+AL+A V KG +V + DVV +TE LMNEL+KLD++ ADG
Sbjct: 166 EKAAKAVAAVTAEVDKLAPKVAALDASVRKGEKVAENDVVQVTELLMNELLKLDAVVADG 225
Query: 386 EVKEQRRVQEKRVQKYVEALDAI 408
+VK QRR+Q KRVQKYVE LDA+
Sbjct: 226 DVKAQRRLQVKRVQKYVETLDAV 248
>Os04g0619900 Ubiquitin domain containing protein
Length = 272
Score = 171 bits (434), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 129/208 (62%), Gaps = 9/208 (4%)
Query: 210 WEVRPGGMLVQKRXXXXXXXXXXXXXXT---------IRVKVKYNGVYHEIYINSQASFG 260
WEVRP GM+VQ R I+V+VKY HE+ ++S ASFG
Sbjct: 34 WEVRPSGMVVQAREEGPGGGGGGGGGMGIPPRPPPPEIKVRVKYGAARHEVAVSSIASFG 93
Query: 261 ELKKLLSEKTGLHPDDQKVVYRDKERDSKAFLDIAGVKDRSKMLLLEDPTAQAKRLLEER 320
ELKKLL+ +TGL DQ++ YR KER + +LD+ GVK+RSK+ L EDPT+ +R +E +
Sbjct: 94 ELKKLLAARTGLPAADQRLTYRGKERGNADYLDVCGVKNRSKLYLAEDPTSVERRYIERQ 153
Query: 321 RHCKAERAAKSVSRVALDVDKLASKVSALEAIVSKGGRVVDADVVALTEALMNELVKLDS 380
+ K E A +++ +AL+VDKLA +V ++E +++G +V + + L E LM VKLDS
Sbjct: 154 KSAKIETANRAIGAIALEVDKLADQVRSIEKSITRGSKVAEVQITTLIELLMRLAVKLDS 213
Query: 381 IAADGEVKEQRRVQEKRVQKYVEALDAI 408
I A+G+ Q+ +Q KRVQK VE LD +
Sbjct: 214 IHAEGDSSSQKNIQAKRVQKCVETLDVL 241
>Os01g0831200 Ubiquitin domain containing protein
Length = 262
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/204 (40%), Positives = 123/204 (60%), Gaps = 16/204 (7%)
Query: 210 WEVRPGGMLVQKRXXXXXXXXXXXXXXTIRVKVKYNGVYHEIYINSQASFGELKKLLSEK 269
WEVRPGGMLVQ+R +R++V + + ++ + + ++FGELK +L++
Sbjct: 19 WEVRPGGMLVQRR--------DGDTGPAVRLRVSHGASFRDVAVPAHSTFGELKGVLTQA 70
Query: 270 TGLHPDDQKVVYRDKERDSKAFLDIAGVKDRSKMLLLEDPTAQAKRLLEERRHC-----K 324
TG+ P+ Q++ +R KE+ FL AGVKD +K+LLLE P A +E+R
Sbjct: 71 TGVEPERQRLFFRGKEKSDNEFLHTAGVKDGAKLLLLEKP---APANVEQRAEPVIMDES 127
Query: 325 AERAAKSVSRVALDVDKLASKVSALEAIVSKGGRVVDADVVALTEALMNELVKLDSIAAD 384
+A ++V RV +VD+L++KV LE V G ++ D D V LTE LM EL+KLD I A+
Sbjct: 128 MMKACEAVGRVRAEVDRLSAKVCDLEKSVFAGRKIEDKDFVVLTELLMMELLKLDGIEAE 187
Query: 385 GEVKEQRRVQEKRVQKYVEALDAI 408
GE + QR+ + +RVQ VE LD +
Sbjct: 188 GEARAQRKAEVRRVQGLVETLDKL 211
>Os01g0907200 Ubiquitin domain containing protein
Length = 172
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 73/123 (59%), Gaps = 8/123 (6%)
Query: 202 AAVAKEEV--WEVRPGGMLVQKRXX------XXXXXXXXXXXXTIRVKVKYNGVYHEIYI 253
A VA+ E WEVRPGGMLVQKR I V+V +H++ I
Sbjct: 31 AMVAEHEKIEWEVRPGGMLVQKRRAPEEQDDGSSSMSAHSGADAIVVRVSTGWQWHDVSI 90
Query: 254 NSQASFGELKKLLSEKTGLHPDDQKVVYRDKERDSKAFLDIAGVKDRSKMLLLEDPTAQA 313
+S A+FG+LK +LS TGL P DQ+++Y+ KERD L + GV+D+ K+LLLEDP +
Sbjct: 91 DSTATFGDLKVMLSLVTGLWPRDQRLLYKGKERDDGDHLHMVGVQDKDKVLLLEDPAVKE 150
Query: 314 KRL 316
++L
Sbjct: 151 RKL 153
>AK058550
Length = 172
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 73/123 (59%), Gaps = 8/123 (6%)
Query: 202 AAVAKEEV--WEVRPGGMLVQKRXX------XXXXXXXXXXXXTIRVKVKYNGVYHEIYI 253
A VA+ E WEVRPGGMLVQKR I V+V +H++ I
Sbjct: 31 AMVAEHEKIEWEVRPGGMLVQKRRAPEEQDDGSSSMSAHSGADAIVVRVSTGWQWHDVSI 90
Query: 254 NSQASFGELKKLLSEKTGLHPDDQKVVYRDKERDSKAFLDIAGVKDRSKMLLLEDPTAQA 313
+S A+FG+LK +LS TGL P DQ+++Y+ KERD L + GV+D+ K+LLLEDP +
Sbjct: 91 DSTATFGDLKVMLSLVTGLWPRDQRLLYKGKERDDGDHLHMVGVQDKDKVLLLEDPAVKE 150
Query: 314 KRL 316
++L
Sbjct: 151 RKL 153
>Os02g0597700 Ubiquitin domain containing protein
Length = 168
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 62/100 (62%), Gaps = 7/100 (7%)
Query: 210 WEVRPGGMLVQKRXXXXXXXXXXXXXXTIRVKVKYNGVYHEIYINSQASFGELKKLLSEK 269
WEVRPGGMLVQKR I V+V +H++ I + ++FGELK LS
Sbjct: 49 WEVRPGGMLVQKREGRGGEE-------VILVRVSTGFAWHDVSIAATSTFGELKVRLSMV 101
Query: 270 TGLHPDDQKVVYRDKERDSKAFLDIAGVKDRSKMLLLEDP 309
TGL P +Q++++R KER+ L + GV+D+ K+LLLEDP
Sbjct: 102 TGLEPREQRLLFRGKEREDTDHLHMVGVRDKDKVLLLEDP 141
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.134 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,075,277
Number of extensions: 488945
Number of successful extensions: 1526
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 1518
Number of HSP's successfully gapped: 8
Length of query: 501
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 396
Effective length of database: 11,553,331
Effective search space: 4575119076
Effective search space used: 4575119076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)