BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0907200 Os01g0907200|J065002B08
(172 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G14360.1 | chr5:4631038-4631641 FORWARD LENGTH=164 134 3e-32
AT5G40630.1 | chr5:16271402-16272429 REVERSE LENGTH=166 115 8e-27
AT5G52060.1 | chr5:21152449-21153741 REVERSE LENGTH=343 90 6e-19
AT5G62100.1 | chr5:24940477-24941775 FORWARD LENGTH=297 90 6e-19
AT5G07220.1 | chr5:2265545-2266720 REVERSE LENGTH=304 85 2e-17
AT3G51780.1 | chr3:19207029-19208178 REVERSE LENGTH=270 83 9e-17
>AT5G14360.1 | chr5:4631038-4631641 FORWARD LENGTH=164
Length = 163
Score = 134 bits (336), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 66/116 (56%), Positives = 88/116 (75%), Gaps = 13/116 (11%)
Query: 38 KIEWEVRPGGMLVQKRRAPEEQDDGSSSMSAHSGADAIVVRVSTGWQWHDVSIDSTATFG 97
+I+WE+RPGGMLVQKR+ G D I +RVST +HD+SI++T+TFG
Sbjct: 46 EIKWELRPGGMLVQKRQES-------------IGEDLISIRVSTFAHFHDLSIEATSTFG 92
Query: 98 DLKVMLSLVTGLWPRDQRLLYKGKERDDGDHLHMVGVQDKDKVLLLEDPAVKERKL 153
+LK++LSL+TGL P+ QRL++KGKER+D ++LHMVGV DKDKVLLLEDP K++KL
Sbjct: 93 ELKMVLSLLTGLEPKQQRLVFKGKEREDHEYLHMVGVGDKDKVLLLEDPGFKDKKL 148
>AT5G40630.1 | chr5:16271402-16272429 REVERSE LENGTH=166
Length = 165
Score = 115 bits (289), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 86/120 (71%), Gaps = 13/120 (10%)
Query: 34 AEHEKIEWEVRPGGMLVQKRRAPEEQDDGSSSMSAHSGADAIVVRVSTGWQW-HDVSIDS 92
+ I+WE+RPGGMLVQKR +D ++ D I +RVST Q +++SID+
Sbjct: 50 CNNNNIKWEMRPGGMLVQKR-----SEDSNTE-------DLISLRVSTVSQLSYEISIDA 97
Query: 93 TATFGDLKVMLSLVTGLWPRDQRLLYKGKERDDGDHLHMVGVQDKDKVLLLEDPAVKERK 152
+TFG+LK+M+++V+G+ ++QRLL++GKER+D ++LHM+GV D DKV LL+DPA KE K
Sbjct: 98 NSTFGELKMMIAIVSGIEAKEQRLLFRGKEREDREYLHMIGVGDGDKVFLLQDPAFKELK 157
>AT5G52060.1 | chr5:21152449-21153741 REVERSE LENGTH=343
Length = 342
Score = 90.1 bits (222), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 69/114 (60%), Gaps = 7/114 (6%)
Query: 40 EWEVRPGGMLVQKRRAPEEQDDGSSSMSAHSGADAIVVRVSTGWQWHDVSIDSTATFGDL 99
+ E+RPGGMLVQKR + I VR+ G +H+++I A+FG+L
Sbjct: 39 DLEIRPGGMLVQKR-------NPDLDPVGPPPPPMIRVRIKYGAVYHEINISPQASFGEL 91
Query: 100 KVMLSLVTGLWPRDQRLLYKGKERDDGDHLHMVGVQDKDKVLLLEDPAVKERKL 153
K ML+ TG+ +DQ+L+YK KERD L + GV+DK K++L+EDP +E++
Sbjct: 92 KKMLTGPTGIHHQDQKLMYKDKERDSKAFLDVSGVKDKSKMVLIEDPLSQEKRF 145
>AT5G62100.1 | chr5:24940477-24941775 FORWARD LENGTH=297
Length = 296
Score = 89.7 bits (221), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 74/114 (64%), Gaps = 11/114 (9%)
Query: 40 EWEVRPGGMLVQKRRAPEEQDDGSSSMSAHSGADAIVVRVSTGWQWHDVSIDSTATFGDL 99
E E+RPGGM+VQKR D SSS+ I VRV G H++SI+S +TFG+L
Sbjct: 15 EMELRPGGMVVQKR------TDHSSSV-----PRGIRVRVKYGSVHHEISINSQSTFGEL 63
Query: 100 KVMLSLVTGLWPRDQRLLYKGKERDDGDHLHMVGVQDKDKVLLLEDPAVKERKL 153
K +LS TG+ +D +++YK KERD L + GV+D+ K++L+EDP +E++L
Sbjct: 64 KKILSGATGVHHQDMQIIYKDKERDSKMFLDLSGVKDRSKLILIEDPISQEKRL 117
>AT5G07220.1 | chr5:2265545-2266720 REVERSE LENGTH=304
Length = 303
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 70/114 (61%), Gaps = 11/114 (9%)
Query: 40 EWEVRPGGMLVQKRRAPEEQDDGSSSMSAHSGADAIVVRVSTGWQWHDVSIDSTATFGDL 99
EWE RPGGM+VQ+R D +S + VRV G +H+++I+S ++FG+L
Sbjct: 21 EWESRPGGMVVQRR------TDQNSDVPR-----VFRVRVKYGSVYHEININSQSSFGEL 69
Query: 100 KVMLSLVTGLWPRDQRLLYKGKERDDGDHLHMVGVQDKDKVLLLEDPAVKERKL 153
K MLS GL D ++LYK KERD L + GV+D+ K+++ EDP +E++L
Sbjct: 70 KKMLSDQVGLHHEDMKVLYKDKERDSKMFLDLCGVKDRSKLVVKEDPISQEKRL 123
>AT3G51780.1 | chr3:19207029-19208178 REVERSE LENGTH=270
Length = 269
Score = 82.8 bits (203), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 70/119 (58%), Gaps = 16/119 (13%)
Query: 37 EKIEWEVRPGGMLVQKRRAPEEQDDGSSS---------MSAHSGADAIVVRVSTGWQWHD 87
E+ EWEVRPGGMLVQ+R DD +SS ++ + A I + VS G HD
Sbjct: 7 EESEWEVRPGGMLVQRR------DDAASSDHKPLQDPDSASAAFAQTIRITVSHGSSHHD 60
Query: 88 VSIDSTATFGDLKVMLSLVTGLWPRDQRLLYKGKERDDGDHLHMVGVQDKDK-VLLLED 145
+ I + ATFGD+K L TGL + ++L++G ERDD + L GV+D K V+++ED
Sbjct: 61 LHISAHATFGDVKKALVQKTGLEASELKILFRGVERDDAEQLQAAGVKDASKLVVVVED 119
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.134 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,481,184
Number of extensions: 132205
Number of successful extensions: 388
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 382
Number of HSP's successfully gapped: 6
Length of query: 172
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 80
Effective length of database: 8,584,297
Effective search space: 686743760
Effective search space used: 686743760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 108 (46.2 bits)