BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0619900 Os04g0619900|Os04g0619900
(272 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G52060.1 | chr5:21152449-21153741 REVERSE LENGTH=343 188 2e-48
AT5G07220.1 | chr5:2265545-2266720 REVERSE LENGTH=304 177 5e-45
AT5G62100.1 | chr5:24940477-24941775 FORWARD LENGTH=297 169 1e-42
AT3G51780.1 | chr3:19207029-19208178 REVERSE LENGTH=270 137 7e-33
AT5G14360.1 | chr5:4631038-4631641 FORWARD LENGTH=164 77 1e-14
AT5G40630.1 | chr5:16271402-16272429 REVERSE LENGTH=166 69 2e-12
>AT5G52060.1 | chr5:21152449-21153741 REVERSE LENGTH=343
Length = 342
Score = 188 bits (478), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 99/212 (46%), Positives = 134/212 (63%), Gaps = 10/212 (4%)
Query: 35 EVRPSGMVVQAREEXXXXXXXXXXXXXXXXXXXXXEIKVRVKYGAARHEVAVSSIASFGE 94
E+RP GM+VQ R I+VR+KYGA HE+ +S ASFGE
Sbjct: 41 EIRPGGMLVQKRNPDLDPVGPPPPPM----------IRVRIKYGAVYHEINISPQASFGE 90
Query: 95 LKKLLAARTGLPAADQRLTYRGKERGNADYLDVCGVKNRSKLYLAEDPTSVERRYIERQK 154
LKK+L TG+ DQ+L Y+ KER + +LDV GVK++SK+ L EDP S E+R++E +K
Sbjct: 91 LKKMLTGPTGIHHQDQKLMYKDKERDSKAFLDVSGVKDKSKMVLIEDPLSQEKRFLEMRK 150
Query: 155 SAKIETANRAIGAIALEVDKLADQVRSIEKSITRGSKVAEVQITTLIELLMRLAVKLDSI 214
AK E A++AI I+LEVD+L +V + E +G K+AE + T+IELLM +KLD+I
Sbjct: 151 IAKTEKASKAISDISLEVDRLGGRVSAFEMVTKKGGKIAEKDLVTVIELLMNELIKLDAI 210
Query: 215 HAEGDSSSQKNIQAKRVQKCVETLDVLKISNA 246
AEGD Q+ +Q KRVQ VETLD LK+ N+
Sbjct: 211 VAEGDVKLQRKMQVKRVQNYVETLDALKVKNS 242
>AT5G07220.1 | chr5:2265545-2266720 REVERSE LENGTH=304
Length = 303
Score = 177 bits (449), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 105/295 (35%), Positives = 151/295 (51%), Gaps = 71/295 (24%)
Query: 35 EVRPSGMVVQAREEXXXXXXXXXXXXXXXXXXXXXEIKVRVKYGAARHEVAVSSIASFGE 94
E RP GMVVQ R + +VRVKYG+ HE+ ++S +SFGE
Sbjct: 23 ESRPGGMVVQRRTDQNSDVPRV--------------FRVRVKYGSVYHEININSQSSFGE 68
Query: 95 LKKLLAARTGLPAADQRLTYRGKERGNADYLDVCGVKNRSKLYLAEDPTSVERRYIERQK 154
LKK+L+ + GL D ++ Y+ KER + +LD+CGVK+RSKL + EDP S E+R + ++K
Sbjct: 69 LKKMLSDQVGLHHEDMKVLYKDKERDSKMFLDLCGVKDRSKLVVKEDPISQEKRLLAKRK 128
Query: 155 SAKIETANRAIGAIALEVDKLADQVRSIEKSITRGSKVAEVQITTLIELLMRLAVKLDSI 214
+A IE A+++I I+ EVD+LA QV + E I +G KV E + LIE+LM ++LD+I
Sbjct: 129 NAAIEKASKSISDISFEVDRLAGQVSAFETVINKGGKVEEKSLVNLIEMLMNQLLRLDAI 188
Query: 215 HAEGDSSSQKNIQAKRVQKCVETLDVLKISNA---------------------------- 246
A+GD + +Q +RVQK VE LD+LK+ N+
Sbjct: 189 IADGDVKLMRKMQVQRVQKYVEALDLLKVKNSAKKVEVNKSVRHKPQTQTRFEQRDLLSF 248
Query: 247 --------RLQN--------VIVTTKWETFDA-------------PATTQWELFD 272
R N +V +KWE FD+ P +WE FD
Sbjct: 249 VEEEEEEPRNSNASSSSGTPAVVASKWEMFDSASTAKAAETVKPVPPRFKWEFFD 303
>AT5G62100.1 | chr5:24940477-24941775 FORWARD LENGTH=297
Length = 296
Score = 169 bits (429), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 102/294 (34%), Positives = 154/294 (52%), Gaps = 70/294 (23%)
Query: 35 EVRPSGMVVQAREEXXXXXXXXXXXXXXXXXXXXXEIKVRVKYGAARHEVAVSSIASFGE 94
E+RP GMVVQ R + I+VRVKYG+ HE++++S ++FGE
Sbjct: 17 ELRPGGMVVQKRTDHSSSVPRG--------------IRVRVKYGSVHHEISINSQSTFGE 62
Query: 95 LKKLLAARTGLPAADQRLTYRGKERGNADYLDVCGVKNRSKLYLAEDPTSVERRYIERQK 154
LKK+L+ TG+ D ++ Y+ KER + +LD+ GVK+RSKL L EDP S E+R +E +K
Sbjct: 63 LKKILSGATGVHHQDMQIIYKDKERDSKMFLDLSGVKDRSKLILIEDPISQEKRLLELRK 122
Query: 155 SAKIETANRAIGAIALEVDKLADQVRSIEKSITRGSKVAEVQITTLIELLMRLAVKLDSI 214
A E +++AI I+ +V++LA Q+ + + I +G KV E + L+E+LM VKLD+I
Sbjct: 123 IATKEKSSKAISDISFQVERLAGQLSAFDTVIGKGGKVEEKNLENLMEMLMNQLVKLDAI 182
Query: 215 HAEGDSSSQKNIQ-----------AKRVQKCVETLDVLKISNARLQN------------- 250
+GD +K +Q +R+ K VE LD+LKI N+R
Sbjct: 183 SGDGDVKLKKKMQNLMIRFTNCWKEERLHKYVEALDLLKIKNSRQPQTKPKPQYKEREML 242
Query: 251 ------------------VIVTTKWETFDAPATT--------------QWELFD 272
VI+TT+WETFD+ + + +WELF+
Sbjct: 243 TFYEEASRKPTASSSSPPVIITTRWETFDSSSASTATLQPVRPVHPKFKWELFN 296
>AT3G51780.1 | chr3:19207029-19208178 REVERSE LENGTH=270
Length = 269
Score = 137 bits (345), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 88/264 (33%), Positives = 142/264 (53%), Gaps = 32/264 (12%)
Query: 35 EVRPSGMVVQAREEXXXXXXXXXXXXXXXXXXXXXEIKVRVKYGAARHEVAVSSIASFGE 94
EVRP GM+VQ R++ I++ V +G++ H++ +S+ A+FG+
Sbjct: 12 EVRPGGMLVQRRDDAASSDHKPLQDPDSASAAFAQTIRITVSHGSSHHDLHISAHATFGD 71
Query: 95 LKKLLAARTGLPAADQRLTYRGKERGNADYLDVCGVKNRSKLYLAEDPTSVERRYIERQK 154
+KK L +TGL A++ ++ +RG ER +A+ L GVK+ SKL + + T+ + +E+Q
Sbjct: 72 VKKALVQKTGLEASELKILFRGVERDDAEQLQAAGVKDASKLVVVVEDTN---KRVEQQP 128
Query: 155 ---SAKIETANRAIGAIALEVDKLADQVRSIEKSITRGSKVAEVQITTLIELLMRLAVKL 211
+ ++E A A+ A+ EVDKL+D+V ++E ++ G++VA + ELLMR +KL
Sbjct: 129 PVVTKEMEKAIAAVNAVTGEVDKLSDRVVALEVAVNGGTQVAVREFDMAAELLMRQLLKL 188
Query: 212 DSIHAEGDSSSQKNIQAKRVQKCVETLDVLKISNARLQNVI--------VTTKWETFD-- 261
D I AEGD+ Q+ + +R+Q E +D LK AR N V+T+WE+F
Sbjct: 189 DGIEAEGDAKVQRKAEVRRIQNLQEAVDKLK---ARCSNPFVDQSKAAAVSTEWESFGNG 245
Query: 262 -------------APATTQWELFD 272
A T WE FD
Sbjct: 246 VGSLNPPPPASPSANVTQDWEKFD 269
>AT5G14360.1 | chr5:4631038-4631641 FORWARD LENGTH=164
Length = 163
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 65/117 (55%), Gaps = 16/117 (13%)
Query: 35 EVRPSGMVVQAREEXXXXXXXXXXXXXXXXXXXXXEIKVRVKYGAARHEVAVSSIASFGE 94
E+RP GM+VQ R+E I +RV A H++++ + ++FGE
Sbjct: 50 ELRPGGMLVQKRQESIGEDL----------------ISIRVSTFAHFHDLSIEATSTFGE 93
Query: 95 LKKLLAARTGLPAADQRLTYRGKERGNADYLDVCGVKNRSKLYLAEDPTSVERRYIE 151
LK +L+ TGL QRL ++GKER + +YL + GV ++ K+ L EDP +++ ++
Sbjct: 94 LKMVLSLLTGLEPKQQRLVFKGKEREDHEYLHMVGVGDKDKVLLLEDPGFKDKKLLD 150
>AT5G40630.1 | chr5:16271402-16272429 REVERSE LENGTH=166
Length = 165
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 16/118 (13%)
Query: 35 EVRPSGMVVQAREEXXXXXXXXXXXXXXXXXXXXXEIKVRVK-YGAARHEVAVSSIASFG 93
E+RP GM+VQ R E I +RV +E+++ + ++FG
Sbjct: 58 EMRPGGMLVQKRSEDSNTEDL---------------ISLRVSTVSQLSYEISIDANSTFG 102
Query: 94 ELKKLLAARTGLPAADQRLTYRGKERGNADYLDVCGVKNRSKLYLAEDPTSVERRYIE 151
ELK ++A +G+ A +QRL +RGKER + +YL + GV + K++L +DP E ++I
Sbjct: 103 ELKMMIAIVSGIEAKEQRLLFRGKEREDREYLHMIGVGDGDKVFLLQDPAFKELKHIH 160
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.129 0.346
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,811,301
Number of extensions: 122172
Number of successful extensions: 516
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 508
Number of HSP's successfully gapped: 6
Length of query: 272
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 175
Effective length of database: 8,447,217
Effective search space: 1478262975
Effective search space used: 1478262975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)