BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0594700 Os02g0594700|AK111339
(190 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0594700 Similar to Non-phototropic hypocotyl 3 307 3e-84
Os04g0477000 NPH3 domain containing protein 138 3e-33
Os12g0200200 84 8e-17
Os03g0609800 BTB domain containing protein 78 5e-15
Os04g0636500 BTB domain containing protein 74 5e-14
Os08g0130600 BTB domain containing protein 72 2e-13
Os02g0568200 NPH3 domain containing protein 71 5e-13
Os12g0583500 BTB domain containing protein 66 1e-11
Os03g0738900 NPH3 domain containing protein 66 2e-11
>Os02g0594700 Similar to Non-phototropic hypocotyl 3
Length = 190
Score = 307 bits (787), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 160/190 (84%), Positives = 160/190 (84%)
Query: 1 QVHSEMSKSARKRLCRVINCRKLSDKACAHAAQNELLPLRVVVQVLFFEXXXXXXXXXXX 60
QVHSEMSKSARKRLCRVINCRKLSDKACAHAAQNELLPLRVVVQVLFFE
Sbjct: 1 QVHSEMSKSARKRLCRVINCRKLSDKACAHAAQNELLPLRVVVQVLFFEHARAAAMAGGA 60
Query: 61 XXXXELPGSIRALLQSKSSGSDQEDDAADRVDEQRLRALAAGASPGDDWSVEGLRRAASK 120
ELPGSIRALLQSKSSGSDQEDDAADRVDEQRLRALAAGASPGDDWSVEGLRRAASK
Sbjct: 61 HAAAELPGSIRALLQSKSSGSDQEDDAADRVDEQRLRALAAGASPGDDWSVEGLRRAASK 120
Query: 121 IATLRMKLXXXXXXXXXXXXXXXFARRQQAGLARSASLRFRAFCAIPAARPKRMLSKLWP 180
IATLRMKL FARRQQAGLARSASLRFRAFCAIPAARPKRMLSKLWP
Sbjct: 121 IATLRMKLEEDDDHDGGGGDDEEFARRQQAGLARSASLRFRAFCAIPAARPKRMLSKLWP 180
Query: 181 LARGVTTERH 190
LARGVTTERH
Sbjct: 181 LARGVTTERH 190
>Os04g0477000 NPH3 domain containing protein
Length = 627
Score = 138 bits (347), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 91/189 (48%), Positives = 109/189 (57%), Gaps = 17/189 (8%)
Query: 3 HSEMSKSARKRLCRVINCRKLSDKACAHAAQNELLPLRVVVQVLFFEXXXXXXXXXXXXX 62
H EM KS+RK+LCRV+NCRKLS+KA HAAQNELLPLRVVVQVLFFE
Sbjct: 451 HPEMDKSSRKKLCRVLNCRKLSEKASMHAAQNELLPLRVVVQVLFFENARAAGLSSGHGN 510
Query: 63 --XXELP---GSIRALLQSKSSGSDQEDDAADRVDEQRLRALAAGASPGDDWSVEGLRRA 117
P G + ALL + + +E+ D Q A + A+ G DWSVEGLRRA
Sbjct: 511 RVAARFPGDGGDVSALLGTGRPRTTEENGK----DGQSPAAAGSVAADG-DWSVEGLRRA 565
Query: 118 ASKIATLRMKLXXXXXXXXXXXXXXXFARRQQAGLARSASLRFRAFCAIPAARPKRMLSK 177
AS++ATL+M+L F R +AGLARSAS R A A R KRMLS+
Sbjct: 566 ASRVATLKMRL---EEEDGEDAGDEAFVHRTRAGLARSASSRVTA----AAGRSKRMLSR 618
Query: 178 LWPLARGVT 186
LWP +R T
Sbjct: 619 LWPTSRTFT 627
>Os12g0200200
Length = 104
Score = 83.6 bits (205), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 46/71 (64%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
Query: 85 DDAADRVDEQRLRALAAGASPGDDWSVEGLRRAASKIATLRMKLXXXXXXXXXXXXXXXF 144
+D DRVDEQRLR LAAGASPGDDWSVEGLR ASKIATLRMKL F
Sbjct: 35 EDDTDRVDEQRLRVLAAGASPGDDWSVEGLRHTASKIATLRMKL-EEDDHDGAGDDDEEF 93
Query: 145 ARRQQAGLARS 155
RRQQAGL +
Sbjct: 94 VRRQQAGLVQG 104
>Os03g0609800 BTB domain containing protein
Length = 634
Score = 77.8 bits (190), Expect = 5e-15, Method: Composition-based stats.
Identities = 37/79 (46%), Positives = 48/79 (60%)
Query: 3 HSEMSKSARKRLCRVINCRKLSDKACAHAAQNELLPLRVVVQVLFFEXXXXXXXXXXXXX 62
H +SKS +K LCR+++C+KLS AC HA QNE LPLRVVVQVLFFE
Sbjct: 441 HPSLSKSEKKALCRLMDCKKLSQDACLHAVQNERLPLRVVVQVLFFEQIRASAASGRTDA 500
Query: 63 XXELPGSIRALLQSKSSGS 81
EL ++ +LL ++ S
Sbjct: 501 AAELTSAVHSLLPRENGNS 519
>Os04g0636500 BTB domain containing protein
Length = 644
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 42/49 (85%)
Query: 1 QVHSEMSKSARKRLCRVINCRKLSDKACAHAAQNELLPLRVVVQVLFFE 49
+ HS ++ S R++LCR++NC+KLS +AC HAAQNE LPLRVVVQVLFFE
Sbjct: 454 KAHSWLTASEREQLCRLMNCQKLSLEACTHAAQNERLPLRVVVQVLFFE 502
>Os08g0130600 BTB domain containing protein
Length = 641
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/49 (63%), Positives = 41/49 (83%)
Query: 1 QVHSEMSKSARKRLCRVINCRKLSDKACAHAAQNELLPLRVVVQVLFFE 49
+ H +S+S ++ LCRV++C+KLS +AC HAAQNE LPLRV+VQVLFFE
Sbjct: 452 KAHPHLSESEKEELCRVMDCQKLSLEACTHAAQNERLPLRVIVQVLFFE 500
>Os02g0568200 NPH3 domain containing protein
Length = 762
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 39/49 (79%)
Query: 1 QVHSEMSKSARKRLCRVINCRKLSDKACAHAAQNELLPLRVVVQVLFFE 49
+ H +++ RKRLCRV++C+KLS AC HAAQNE LPLRVVVQVLF E
Sbjct: 556 KAHPTLTEHERKRLCRVMDCQKLSFDACMHAAQNERLPLRVVVQVLFTE 604
>Os12g0583500 BTB domain containing protein
Length = 638
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/47 (61%), Positives = 37/47 (78%)
Query: 3 HSEMSKSARKRLCRVINCRKLSDKACAHAAQNELLPLRVVVQVLFFE 49
H ++K +KRLC +++C+KLS +A HA QNE LPLRVVVQVLFFE
Sbjct: 446 HPGLTKGEKKRLCGLMDCKKLSPEASMHAVQNERLPLRVVVQVLFFE 492
>Os03g0738900 NPH3 domain containing protein
Length = 667
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 37/49 (75%)
Query: 1 QVHSEMSKSARKRLCRVINCRKLSDKACAHAAQNELLPLRVVVQVLFFE 49
+ H ++ R R+C V++CRKL+ +AC HAAQNE LPLR V+QVLFFE
Sbjct: 462 KAHPRLAAEERDRVCGVVDCRKLTVEACTHAAQNERLPLRAVLQVLFFE 510
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.131 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,844,141
Number of extensions: 137834
Number of successful extensions: 576
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 572
Number of HSP's successfully gapped: 9
Length of query: 190
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 95
Effective length of database: 12,075,471
Effective search space: 1147169745
Effective search space used: 1147169745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 153 (63.5 bits)