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Os02g0594700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Non-phototropic hypocotyl 3.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10 (0.0413) R2 : 0.819
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.33 (0.122) R2dC : 0.398 R2C : 0.648
β3 : -1.57 (0.0887) R2dE : 0.168 R2E : 0.416
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.167 (0.0866) R2dN8 : 0.00204 R2N8 : 0.00074
σ : 0.773
deviance : 275.36
__
_____
C
peak time of C : 7.72
E
wheather : radiation
threshold : 6.12
memory length : 6
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
258.82 0.756 10 0.444 3.36 -1.56 2.14 0.0205 0.229 7.75 6.772 9 -- --
257.4 0.753 10 0.42 3.4 -1.44 2.11 -- 0.249 7.92 6.287 8 -- --
264.29 0.763 10 0.471 3.41 -1.43 -- -0.97 0.246 7.92 6.171 6 -- --
269.52 0.765 10 0.488 3.34 -1.51 -- -- 0.216 7.82 6.19 6 -- --
709.74 1.25 10.1 0.515 -- -2.75 -- -0.896 0.225 -- 5.39 9 -- --
301.27 0.814 9.98 0.437 4.56 -- 1.8 -- 0.305 9.05 -- -- -- --
312.5 0.828 9.98 0.5 4.56 -- -- -- 0.307 9.06 -- -- -- --
703.12 1.23 10.1 0.518 -- -2.8 -- -- 0.223 -- 5.58 2 -- --
275.36 0.773 10 -- 3.33 -1.57 -- -- 0.167 7.72 6.12 6 -- --
1508.78 1.82 10.1 0.491 -- -- -- -- 0.333 -- -- -- -- --
319.1 0.836 9.99 -- 4.56 -- -- -- 0.251 9.05 -- -- -- --
710.16 1.24 10.1 -- -- -2.8 -- -- 0.163 -- 5.524 2 -- --
1515.15 1.82 10.1 -- -- -- -- -- 0.279 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 248.23 radiation 10.0 10 < th dose dependent rect. 7 21
4 250.93 radiation 1.0 720 > th dose independent rect. 10 5
6 251.37 radiation 20.0 10 < th dose dependent rect. 12 16
11 252.69 radiation 1.0 1440 < th dose independent rect. 9 4
12 252.69 radiation 1.0 1440 < th dose dependent rect. 9 4
27 254.38 wind 7.0 720 < th dose independent rect. 18 5
32 254.89 temperature 15.0 720 > th dose independent rect. 22 5
47 255.59 wind 7.0 720 < th dose independent rect. 18 13
48 255.70 temperature 15.0 720 > th dose independent rect. 7 11
50 255.74 radiation 10.0 10 < th dose independent rect. 13 15
53 255.91 humidity 60.0 14400 > th dose independent rect. 22 10
61 256.06 wind 7.0 720 < th dose independent rect. 19 11
62 256.17 radiation 1.0 1440 > th dose independent rect. 13 1
63 256.38 temperature 15.0 270 > th dose independent rect. 22 12
65 256.51 temperature 15.0 720 > th dose independent rect. 6 13
76 256.98 radiation 1.0 1440 < th dose independent rect. 13 1
77 256.98 radiation 1.0 1440 < th dose dependent rect. 13 1
87 257.52 precipitation 0.1 270 < th dose independent rect. 2 12
88 257.52 precipitation 0.1 270 < th dose dependent rect. 2 12
89 257.74 radiation 1.0 1440 > th dose independent rect. 8 7
96 257.82 radiation 10.0 10 < th dose independent rect. 10 18
109 258.37 radiation 10.0 10 < th dose independent rect. 8 20
110 258.60 wind 7.0 720 < th dose independent rect. 19 3
120 258.92 wind 9.0 720 < th dose independent rect. 3 19
124 259.16 temperature 20.0 720 > th dose independent rect. 15 3
131 259.41 radiation 10.0 720 < th dose independent rect. 3 3
133 259.47 precipitation 0.1 720 < th dose independent rect. 19 11
134 259.47 precipitation 0.1 720 < th dose dependent rect. 19 11
138 259.61 temperature 15.0 720 > th dose independent rect. 6 5
142 259.70 precipitation 0.1 720 < th dose independent rect. 3 3
143 259.70 precipitation 0.1 720 < th dose dependent rect. 3 3
149 260.04 radiation 1.0 30 > th dose independent rect. 5 11
161 260.13 precipitation 0.1 720 < th dose independent rect. 18 13
162 260.13 precipitation 0.1 720 < th dose dependent rect. 18 13
167 260.43 radiation 1.0 30 < th dose independent rect. 5 23
168 260.51 temperature 10.0 720 > th dose independent rect. 10 5
169 260.51 atmosphere 1015.0 720 < th dose independent rect. 10 5
170 260.51 temperature 10.0 720 > th dose independent rect. 15 19
171 260.55 atmosphere 995.0 720 > th dose independent rect. 10 5
175 260.61 temperature 30.0 720 < th dose independent rect. 22 5
176 260.61 humidity 50.0 720 > th dose independent rect. 22 5
179 260.61 atmosphere 995.0 720 > th dose independent rect. 22 5
180 260.61 radiation 1.0 720 < th dose independent rect. 22 5
185 260.61 temperature 10.0 720 > th dose independent rect. 3 19
186 260.61 radiation 1.0 720 < th dose dependent rect. 22 5
195 260.83 temperature 15.0 720 > th dose independent rect. 14 5
196 260.87 radiation 40.0 720 < th dose independent rect. 15 3
211 261.08 wind 9.0 720 < th dose independent rect. 22 5
213 261.16 radiation 40.0 270 < th dose independent rect. 14 12
214 261.21 precipitation 0.1 720 < th dose independent rect. 10 5
217 261.21 precipitation 0.1 720 < th dose dependent rect. 10 5
222 261.54 wind 9.0 720 < th dose independent rect. 11 19
225 261.61 radiation 10.0 720 < th dose independent rect. 19 11
228 261.73 precipitation 0.1 720 < th dose independent rect. 18 21
229 261.73 precipitation 0.1 720 < th dose dependent rect. 18 21
233 261.91 wind 9.0 720 < th dose independent rect. 10 5
235 261.96 wind 7.0 720 < th dose independent rect. 3 3
237 262.08 precipitation 0.1 720 < th dose independent rect. 2 5
238 262.08 precipitation 0.1 720 < th dose dependent rect. 2 5
240 262.10 precipitation 0.1 720 < th dose independent rect. 3 19
241 262.10 precipitation 0.1 720 < th dose dependent rect. 3 19
242 262.15 radiation 1.0 1440 > th dose independent rect. 9 1
245 262.18 radiation 20.0 43200 < th dose independent rect. 22 8
251 262.27 precipitation 0.1 720 < th dose independent rect. 22 5
252 262.27 precipitation 0.1 720 < th dose dependent rect. 22 5
253 262.28 temperature 15.0 720 > th dose independent rect. 6 21
255 262.33 atmosphere 1015.0 720 < th dose independent rect. 23 19
273 262.50 atmosphere 1015.0 720 < th dose independent rect. 22 5
275 262.54 precipitation 0.1 720 < th dose independent rect. 18 5
276 262.54 precipitation 0.1 720 < th dose dependent rect. 18 5
279 262.70 precipitation 0.1 720 < th dose independent rect. 19 19
280 262.70 precipitation 0.1 720 < th dose dependent rect. 19 19
282 262.78 radiation 20.0 14400 < th dose independent rect. 5 1
285 262.84 temperature 10.0 720 > th dose independent rect. 3 3
286 262.84 temperature 30.0 720 < th dose independent rect. 3 3
287 262.84 humidity 50.0 720 > th dose independent rect. 3 3
290 262.84 atmosphere 995.0 720 > th dose independent rect. 3 3
295 262.84 temperature 20.0 30 > th dose independent rect. 16 12
300 262.93 humidity 70.0 14400 < th dose dependent rect. 21 1
309 263.00 humidity 70.0 14400 > th dose independent rect. 21 4
314 263.14 wind 1.0 720 > th dose independent rect. 15 3
316 263.15 humidity 60.0 14400 > th dose independent rect. 5 3
320 263.27 radiation 1.0 14400 < th dose dependent rect. 9 1
323 263.28 atmosphere 1015.0 720 < th dose independent rect. 15 3
324 263.28 temperature 10.0 720 > th dose independent rect. 18 21
326 263.30 wind 9.0 720 < th dose independent rect. 18 21
329 263.36 temperature 15.0 720 > th dose independent rect. 22 21
330 263.37 radiation 40.0 720 < th dose dependent rect. 3 3
333 263.45 temperature 15.0 270 > th dose independent rect. 14 12
350 263.70 precipitation 0.1 720 < th dose independent rect. 6 5
352 263.70 precipitation 0.1 720 < th dose dependent rect. 6 5
354 263.75 temperature 20.0 10 > th dose independent rect. 1 3
356 263.76 wind 7.0 720 < th dose independent rect. 2 5
362 263.87 wind 1.0 720 > th dose dependent rect. 15 3
382 264.14 temperature 15.0 14400 < th dose independent rect. 9 2
383 264.15 humidity 50.0 10 > th dose independent rect. 16 12
384 264.16 wind 9.0 720 < th dose independent rect. 6 5
388 264.21 temperature 10.0 720 > th dose independent rect. 3 11
389 264.21 atmosphere 995.0 720 > th dose independent rect. 3 11
397 264.25 wind 9.0 270 < th dose independent rect. 22 12
400 264.30 temperature 10.0 270 > th dose independent rect. 10 12
402 264.30 atmosphere 995.0 270 > th dose independent rect. 22 12
403 264.31 radiation 10.0 4320 < th dose dependent rect. 22 7
404 264.36 humidity 60.0 14400 > th dose independent rect. 7 1
408 264.40 temperature 10.0 720 > th dose independent rect. 2 13
412 264.48 humidity 50.0 270 > th dose independent rect. 22 12
417 264.51 atmosphere 995.0 270 > th dose independent rect. 18 12
418 264.57 atmosphere 1015.0 720 < th dose independent rect. 23 11
421 264.61 wind 9.0 720 < th dose independent rect. 10 21
424 264.64 atmosphere 995.0 720 > th dose independent rect. 6 5
425 264.64 atmosphere 1015.0 720 < th dose independent rect. 6 5
426 264.64 temperature 10.0 720 > th dose independent rect. 11 19
435 264.73 radiation 20.0 720 < th dose independent rect. 2 5
436 264.73 wind 9.0 720 < th dose independent rect. 19 19
445 264.88 atmosphere 995.0 720 > th dose independent rect. 2 13
448 264.91 temperature 15.0 14400 > th dose independent rect. 9 2
450 264.93 precipitation 0.1 720 < th dose independent rect. 19 3
452 264.93 precipitation 0.1 720 < th dose dependent rect. 19 3
453 264.94 radiation 20.0 720 < th dose independent rect. 18 13
454 264.97 temperature 10.0 720 > th dose independent rect. 19 11
455 264.97 temperature 30.0 720 < th dose independent rect. 19 11
456 264.97 humidity 50.0 720 > th dose independent rect. 19 11
463 264.97 atmosphere 1015.0 720 < th dose independent rect. 6 13
467 264.99 radiation 10.0 10 < th dose dependent rect. 15 23
469 265.03 wind 9.0 720 < th dose independent rect. 11 11
475 265.07 atmosphere 995.0 720 > th dose independent rect. 18 21
477 265.09 atmosphere 1015.0 720 < th dose independent rect. 14 5
478 265.09 temperature 10.0 720 > th dose independent rect. 19 19
479 265.09 atmosphere 995.0 720 > th dose independent rect. 19 19
480 265.10 radiation 10.0 10 < th dose dependent no NA NA
481 265.10 radiation 10.0 10 < th dose dependent rect. 13 23
483 265.11 temperature 15.0 720 > th dose independent rect. 23 19
485 265.14 temperature 10.0 720 > th dose independent rect. 2 5
486 265.14 temperature 30.0 720 < th dose independent rect. 2 5
487 265.14 humidity 50.0 720 > th dose independent rect. 2 5
489 265.14 atmosphere 995.0 720 > th dose independent rect. 2 5
492 265.14 temperature 10.0 720 > th dose independent rect. 7 19
494 265.15 radiation 10.0 720 < th dose dependent rect. 19 10
495 265.17 precipitation 0.1 720 < th dose independent rect. 11 19
496 265.17 precipitation 0.1 720 < th dose dependent rect. 11 19
497 265.17 radiation 10.0 10 < th dose dependent rect. 11 23
503 265.21 atmosphere 995.0 720 > th dose independent rect. 18 5
505 265.23 temperature 10.0 720 > th dose independent rect. 18 5
506 265.23 humidity 50.0 720 > th dose independent rect. 18 5
507 265.23 radiation 20.0 720 < th dose independent rect. 18 5
512 265.25 temperature 15.0 14400 < th dose dependent rect. 4 1
513 265.25 humidity 80.0 720 < th dose dependent rect. 19 2
517 265.27 atmosphere 1015.0 720 < th dose independent rect. 7 11
518 265.27 temperature 10.0 720 > th dose independent rect. 18 13
519 265.27 humidity 50.0 720 > th dose independent rect. 18 13
522 265.27 radiation 10.0 10 < th dose dependent rect. 9 23
529 265.34 wind 9.0 720 < th dose independent rect. 10 13
533 265.35 atmosphere 1015.0 270 < th dose independent rect. 2 12
541 265.42 radiation 40.0 720 < th dose dependent rect. 19 11
544 265.47 wind 7.0 4320 > th dose independent rect. 18 1
553 265.62 wind 9.0 720 < th dose independent rect. 3 11
556 265.67 wind 9.0 720 < th dose independent rect. 2 13
581 265.99 radiation 40.0 720 < th dose dependent rect. 18 5
582 266.01 humidity 50.0 720 > th dose independent rect. 6 5
583 266.02 humidity 50.0 14400 > th dose dependent rect. 5 2
585 266.04 radiation 1.0 4320 > th dose independent rect. 4 1
604 266.04 radiation 1.0 4320 > th dose dependent rect. 4 1
618 266.06 precipitation 0.1 270 < th dose independent rect. 10 12
619 266.06 precipitation 0.1 270 < th dose dependent rect. 10 12
620 266.08 wind 9.0 270 < th dose independent rect. 6 12
636 266.17 wind 7.0 4320 < th dose independent rect. 17 2
651 266.26 wind 1.0 90 < th dose independent rect. 1 4
655 266.28 humidity 70.0 14400 < th dose independent rect. 21 1
677 266.36 temperature 15.0 14400 < th dose independent rect. 5 7
683 266.39 temperature 15.0 720 > th dose independent rect. 7 3
722 266.64 precipitation 0.1 720 < th dose independent rect. 15 3
725 266.64 precipitation 0.1 720 < th dose dependent rect. 15 3
754 266.80 humidity 50.0 14400 < th dose dependent rect. 9 1
759 266.86 temperature 15.0 14400 < th dose independent rect. 21 3
772 266.91 temperature 15.0 14400 > th dose independent rect. 21 3
777 266.96 humidity 60.0 14400 < th dose independent rect. 6 1
781 266.96 radiation 20.0 14400 > th dose independent rect. 17 1
833 266.96 humidity 60.0 14400 < th dose dependent rect. 6 1
837 266.96 radiation 20.0 14400 > th dose dependent rect. 17 1
900 267.03 precipitation 0.1 720 < th dose independent rect. 10 21
901 267.03 precipitation 0.1 720 < th dose dependent rect. 10 21
904 267.05 precipitation 0.1 10 < th dose independent rect. 4 12
905 267.05 precipitation 0.1 10 < th dose dependent rect. 4 12
922 267.14 precipitation 0.1 270 > th dose independent rect. 2 2
947 267.19 humidity 50.0 720 > th dose dependent rect. 3 3
964 267.26 temperature 15.0 14400 < th dose dependent sin 5 NA
975 267.29 atmosphere 1015.0 720 < th dose independent rect. 3 3
981 267.31 temperature 15.0 14400 > th dose independent rect. 21 1
997 267.36 humidity 90.0 14400 < th dose independent rect. 6 1