Os03g0738900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NPH3 domain containing protein.
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Os03g0738900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : NPH3 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.82 | 0.321 | 9.25 | -0.686 | 0.315 | -1.76 | -1.18 | -1.34 | -0.325 | 3.68 | 0.4155 | 295 | 0.0791 | -- |
| 50.8 | 0.332 | 9.24 | -0.68 | 0.29 | -1.82 | -0.461 | -- | -0.348 | 3.9 | 0.2532 | 305 | 0.178 | -- |
| 49.37 | 0.327 | 9.24 | -0.678 | 0.296 | -1.82 | -- | -0.763 | -0.309 | 4.16 | 0.26 | 304 | 0.192 | -- |
| 50.77 | 0.332 | 9.24 | -0.675 | 0.317 | -1.92 | -- | -- | -0.343 | 5.29 | 0.2503 | 309 | 0.398 | -- |
| 50.6 | 0.331 | 9.25 | -0.667 | -- | -1.86 | -- | -0.603 | -0.324 | -- | 0.4699 | 332 | 3.72e-06 | -- |
| 80.73 | 0.421 | 9.27 | -0.717 | 1.71 | -- | 0.54 | -- | -0.312 | 0.213 | -- | -- | -- | -- |
| 81.98 | 0.424 | 9.27 | -0.739 | 1.71 | -- | -- | -- | -0.315 | 0.249 | -- | -- | -- | -- |
| 51.59 | 0.335 | 9.24 | -0.627 | -- | -1.89 | -- | -- | -0.314 | -- | 0.19 | 354 | 0.102 | -- |
| 63.39 | 0.371 | 9.23 | -- | 0.328 | -1.87 | -- | -- | -0.275 | 4.68 | 0.2 | 313 | 0.701 | -- |
| 266.56 | 0.763 | 9.24 | -0.682 | -- | -- | -- | -- | -0.289 | -- | -- | -- | -- | -- |
| 96.36 | 0.459 | 9.26 | -- | 1.7 | -- | -- | -- | -0.233 | 0.226 | -- | -- | -- | -- |
| 63.23 | 0.37 | 9.24 | -- | -- | -1.89 | -- | -- | -0.258 | -- | 0.21 | 354 | 0.0566 | -- |
| 278.84 | 0.779 | 9.22 | -- | -- | -- | -- | -- | -0.213 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.01 | wind | 9.0 | 270 | < th | dose independent | rect. | 11 | 19 |
| 2 | 43.15 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 5 |
| 3 | 43.15 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 5 |
| 4 | 43.15 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 5 |
| 5 | 43.15 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 5 |
| 6 | 43.15 | temperature | 10.0 | 270 | > th | dose independent | rect. | 11 | 19 |
| 7 | 43.15 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 5 |
| 8 | 43.19 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 5 |
| 10 | 43.56 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 5 |
| 13 | 44.27 | radiation | 1.0 | 270 | > th | dose independent | rect. | 6 | 5 |
| 14 | 44.72 | radiation | 1.0 | 270 | > th | dose independent | rect. | 18 | 17 |
| 15 | 45.06 | temperature | 30.0 | 270 | < th | dose independent | rect. | 6 | 5 |
| 27 | 45.73 | radiation | 40.0 | 270 | < th | dose independent | rect. | 6 | 5 |
| 30 | 46.33 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 11 | 19 |
| 31 | 46.33 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 11 | 19 |
| 33 | 46.51 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 5 |
| 34 | 46.56 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 5 |
| 35 | 46.61 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 7 |
| 36 | 46.61 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 7 |
| 37 | 46.63 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 17 |
| 38 | 46.66 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 7 |
| 39 | 46.66 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 7 |
| 40 | 46.66 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 5 | 7 |
| 41 | 46.66 | temperature | 10.0 | 270 | > th | dose independent | rect. | 12 | 17 |
| 45 | 46.73 | wind | 1.0 | 270 | > th | dose independent | rect. | 6 | 5 |
| 52 | 46.87 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 11 | 19 |
| 63 | 47.16 | radiation | 1.0 | 270 | > th | dose independent | sin | 6 | NA |
| 64 | 47.18 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 66 | 47.25 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 19 |
| 67 | 47.25 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 19 |
| 85 | 47.47 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 86 | 47.49 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 93 | 47.56 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 95 | 47.56 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 96 | 47.56 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 99 | 47.56 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 100 | 47.56 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 101 | 47.56 | radiation | 20.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 104 | 47.56 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 19 |
| 105 | 47.57 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 119 | 47.87 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 5 |
| 120 | 47.87 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 135 | 47.93 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 16 | 9 |
| 137 | 47.93 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 16 | 9 |
| 145 | 48.07 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 6 | 7 |
| 167 | 48.26 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 15 |
| 189 | 48.56 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 19 |
| 210 | 48.74 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 11 |
| 214 | 48.83 | temperature | 10.0 | 270 | > th | dose independent | rect. | 16 | 9 |
| 215 | 48.83 | radiation | 40.0 | 270 | < th | dose independent | rect. | 16 | 9 |
| 216 | 48.83 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 15 |
| 217 | 48.83 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 15 |
| 219 | 48.86 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 11 |
| 261 | 49.10 | radiation | 1.0 | 270 | < th | dose independent | sin | 6 | NA |
| 263 | 49.11 | wind | 9.0 | 270 | < th | dose independent | rect. | 16 | 9 |
| 265 | 49.18 | humidity | 50.0 | 270 | > th | dose independent | rect. | 13 | 16 |
| 275 | 49.32 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 17 |
| 277 | 49.32 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 17 |
| 279 | 49.33 | radiation | 1.0 | 270 | < th | dose dependent | sin | 6 | NA |
| 290 | 49.50 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 12 | 17 |
| 295 | 49.53 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 8 |
| 302 | 49.55 | radiation | 40.0 | 90 | < th | dose independent | rect. | 13 | 17 |
| 307 | 49.60 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 15 |
| 308 | 49.60 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 15 |
| 329 | 49.96 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 19 |
| 334 | 49.97 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 344 | 50.06 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 18 |
| 356 | 50.21 | wind | 9.0 | 270 | < th | dose independent | rect. | 11 | 9 |
| 364 | 50.34 | temperature | 10.0 | 270 | > th | dose independent | rect. | 11 | 9 |
| 365 | 50.34 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 11 | 9 |
| 366 | 50.34 | temperature | 10.0 | 270 | > th | dose independent | rect. | 20 | 15 |
| 367 | 50.34 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 20 | 15 |
| 368 | 50.35 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 20 | 15 |
| 369 | 50.35 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 20 | 15 |
| 377 | 50.42 | wind | 9.0 | 270 | < th | dose independent | rect. | 20 | 15 |
| 378 | 50.42 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 11 | 19 |
| 380 | 50.43 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 15 |
| 385 | 50.45 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 1 | 5 |
| 394 | 50.51 | wind | 1.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 399 | 50.54 | radiation | 40.0 | 270 | < th | dose independent | rect. | 6 | 19 |
| 401 | 50.56 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 3 |
| 406 | 50.65 | radiation | 1.0 | 10 | > th | dose independent | rect. | 7 | 6 |
| 433 | 50.77 | humidity | 50.0 | 270 | > th | dose independent | rect. | 20 | 15 |
| 441 | 50.80 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 16 |
| 443 | 50.81 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 7 | 6 |
| 474 | 50.94 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 16 | 9 |
| 477 | 50.95 | wind | 1.0 | 270 | > th | dose independent | rect. | 6 | 18 |
| 534 | 51.17 | temperature | 20.0 | 10 | > th | dose independent | rect. | 7 | 6 |
| 537 | 51.18 | wind | 9.0 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 551 | 51.23 | wind | 9.0 | 10 | < th | dose independent | rect. | 13 | 18 |
| 553 | 51.25 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 7 | 6 |
| 554 | 51.25 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 7 | 6 |
| 558 | 51.31 | wind | 1.0 | 270 | > th | dose independent | rect. | 11 | 8 |
| 581 | 51.40 | wind | 1.0 | 270 | > th | dose independent | rect. | 11 | 19 |
| 583 | 51.42 | temperature | 10.0 | 10 | > th | dose independent | rect. | 7 | 6 |
| 585 | 51.42 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 7 | 6 |
| 586 | 51.42 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 7 | 6 |
| 588 | 51.42 | temperature | 10.0 | 10 | > th | dose independent | rect. | 13 | 18 |
| 598 | 51.49 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 16 | 9 |
| 613 | 51.56 | wind | 1.0 | 10 | > th | dose independent | rect. | 7 | 6 |
| 631 | 51.63 | wind | 9.0 | 10 | < th | dose independent | rect. | 7 | 6 |
| 685 | 51.88 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 11 | 8 |
| 686 | 51.88 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 11 | 8 |
| 711 | 52.03 | temperature | 30.0 | 270 | < th | dose independent | rect. | 19 | 16 |
| 715 | 52.06 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 2 | 7 |
| 721 | 52.12 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 724 | 52.12 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 726 | 52.12 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 14 | 18 |
| 833 | 52.53 | wind | 1.0 | 270 | > th | dose independent | rect. | 12 | 17 |
| 875 | 52.74 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 910 | 52.81 | radiation | 20.0 | 10 | < th | dose independent | rect. | 2 | 7 |
| 931 | 52.87 | wind | 1.0 | 270 | > th | dose independent | rect. | 16 | 9 |
| 969 | 52.94 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 21 | 16 |
| 996 | 53.02 | radiation | 40.0 | 270 | < th | dose independent | rect. | 19 | 16 |
| 999 | 53.04 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 13 | 17 |